Wall clock time and date at job start Wed Apr 1 2020 00:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.47772 * 2 1 4 4 C 1.50708 * 109.46774 * 119.99826 * 2 1 3 5 5 O 1.21283 * 119.99898 * 119.99869 * 4 2 1 6 6 N 1.34774 * 119.99842 * 299.99528 * 4 2 1 7 7 C 1.46496 * 120.00261 * 0.02562 * 6 4 2 8 8 C 1.46504 * 119.99518 * 179.97438 * 6 4 2 9 9 C 1.50702 * 109.47133 * 90.00309 * 8 6 4 10 10 H 1.07998 * 119.99621 * 0.02562 * 9 8 6 11 11 C 1.37873 * 120.00127 * 179.97438 * 9 8 6 12 12 N 1.31516 * 120.00153 * 180.02562 * 11 9 8 13 13 Si 1.86802 * 119.99884 * 359.97438 * 11 9 8 14 14 H 1.48504 * 109.46625 * 90.00092 * 13 11 9 15 15 H 1.48500 * 109.47247 * 209.99758 * 13 11 9 16 16 H 1.48495 * 109.47235 * 330.00576 * 13 11 9 17 17 N 1.46903 * 109.47218 * 239.99348 * 2 1 3 18 18 C 1.47011 * 111.00384 * 306.38346 * 17 2 1 19 19 C 1.53088 * 109.29869 * 182.39243 * 18 17 2 20 20 H 1.09000 * 109.50765 * 63.06015 * 19 18 17 21 21 C 1.53001 * 109.50812 * 183.15194 * 19 18 17 22 22 O 1.43033 * 109.24199 * 303.12986 * 19 18 17 23 23 C 1.42937 * 113.72204 * 58.57117 * 22 19 18 24 24 C 1.53096 * 109.44344 * 181.37323 * 23 22 19 25 25 C 1.53198 * 109.02185 * 296.83347 * 24 23 22 26 26 C 1.53090 * 109.20669 * 303.21563 * 25 24 23 27 27 O 1.42899 * 109.45238 * 57.57941 * 26 25 24 28 28 C 1.42921 * 114.08552 * 298.82979 * 27 26 25 29 29 C 1.47036 * 110.99589 * 70.00542 * 17 2 1 30 30 H 1.09005 * 109.47172 * 300.00745 * 1 2 3 31 31 H 1.09003 * 109.46926 * 60.00269 * 1 2 3 32 32 H 1.08998 * 109.47772 * 180.02562 * 1 2 3 33 33 H 1.08992 * 109.47309 * 89.99756 * 7 6 4 34 34 H 1.09004 * 109.47059 * 209.99978 * 7 6 4 35 35 H 1.09002 * 109.46704 * 329.99510 * 7 6 4 36 36 H 1.09005 * 109.46803 * 210.00361 * 8 6 4 37 37 H 1.08998 * 109.47085 * 330.00317 * 8 6 4 38 38 H 0.96991 * 119.99858 * 179.97438 * 12 11 9 39 39 H 1.09000 * 109.49789 * 302.34156 * 18 17 2 40 40 H 1.09003 * 109.50080 * 62.43652 * 18 17 2 41 41 H 1.09003 * 109.47197 * 60.00178 * 21 19 18 42 42 H 1.08998 * 109.46730 * 179.97438 * 21 19 18 43 43 H 1.08994 * 109.47274 * 299.99707 * 21 19 18 44 44 H 1.09003 * 109.49422 * 176.99822 * 24 23 22 45 45 H 1.09005 * 109.60078 * 56.72928 * 24 23 22 46 46 H 1.09002 * 109.52621 * 183.27978 * 25 24 23 47 47 H 1.08995 * 109.52269 * 63.15141 * 25 24 23 48 48 H 1.08995 * 109.47380 * 177.57325 * 26 25 24 49 49 H 1.08997 * 109.47592 * 297.58419 * 26 25 24 50 50 H 1.08993 * 109.48228 * 181.04916 * 28 27 26 51 51 H 1.09000 * 109.48395 * 301.09452 * 28 27 26 52 52 H 1.09002 * 109.50924 * 57.79344 * 29 17 2 53 53 H 1.09003 * 109.51000 * 297.65420 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 1.2306 5 8 2.7294 -1.6966 1.1193 6 7 1.7066 -0.2498 2.4546 7 6 0.8640 0.9410 2.5890 8 6 2.1945 -0.9408 3.6508 9 6 3.5222 -0.3580 4.0613 10 1 3.9587 0.4469 3.4886 11 6 4.1791 -0.8516 5.1684 12 7 5.3376 -0.3426 5.5269 13 14 3.4230 -2.2424 6.1601 14 1 3.8820 -3.5453 5.6150 15 1 3.8434 -2.1238 7.5794 16 1 1.9426 -2.1637 6.0740 17 7 2.0196 -0.6926 -1.1994 18 6 1.4277 -2.0336 -1.3120 19 6 2.0084 -2.7415 -2.5389 20 1 3.0819 -2.8767 -2.4070 21 6 1.3382 -4.1068 -2.7059 22 8 1.7666 -1.9442 -3.7016 23 6 2.3279 -0.6319 -3.6257 24 6 1.9832 0.1442 -4.8996 25 6 2.6305 -0.5537 -6.1000 26 6 4.1403 -0.6567 -5.8688 27 8 4.3883 -1.3647 -4.6526 28 6 3.8486 -0.7332 -3.4896 29 6 1.7527 0.0978 -2.4101 30 1 -0.3634 0.5140 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.1838 0.6428 2.6225 34 1 1.1218 1.4666 3.5085 35 1 1.0273 1.5997 1.7360 36 1 1.4763 -0.8152 4.4612 37 1 2.3151 -2.0021 3.4335 38 1 5.7995 -0.6896 6.3059 39 1 1.6589 -2.6098 -0.4161 40 1 0.3466 -1.9462 -1.4200 41 1 0.2650 -3.9708 -2.8394 42 1 1.7518 -4.6100 -3.5798 43 1 1.5201 -4.7119 -1.8178 44 1 2.3650 1.1621 -4.8200 45 1 0.9014 0.1685 -5.0316 46 1 2.4390 0.0242 -7.0042 47 1 2.2099 -1.5531 -6.2106 48 1 4.5997 -1.1909 -6.7004 49 1 4.5665 0.3442 -5.8000 50 1 4.0961 -1.3236 -2.6075 51 1 4.2720 0.2661 -3.3890 52 1 2.2232 1.0766 -2.3169 53 1 0.6768 0.2207 -2.5348 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000366573360.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:19 Heat of formation + Delta-G solvation = -125.820210 kcal Electronic energy + Delta-G solvation = -32651.492459 eV Core-core repulsion = 28523.074226 eV Total energy + Delta-G solvation = -4128.418232 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.98921 -40.79490 -38.98538 -37.07881 -36.60341 -35.00479 -34.74475 -33.00491 -32.51895 -30.73377 -29.65562 -27.76387 -27.68639 -26.38994 -26.18870 -25.03704 -23.62107 -22.95868 -21.56919 -20.46500 -19.91208 -19.14070 -18.10132 -17.76355 -17.54247 -16.96134 -16.86329 -16.55716 -16.43596 -15.98273 -15.83231 -15.74983 -15.53883 -15.18529 -14.73609 -14.52854 -14.44663 -14.33488 -13.99839 -13.69743 -13.62793 -13.55462 -13.46221 -13.41358 -13.22124 -13.01668 -12.87174 -12.64396 -12.55588 -12.50810 -12.31437 -12.22792 -12.01764 -11.99457 -11.89505 -11.73956 -11.44413 -11.25288 -10.87095 -10.83216 -10.42079 -10.10745 -9.40437 -9.21223 -8.34288 -6.39177 1.31526 1.36112 1.44097 1.82694 2.17166 2.30346 2.59010 2.83407 2.99672 3.00276 3.55263 3.67463 3.71738 3.78266 3.88415 4.03590 4.04180 4.09329 4.10841 4.22499 4.27796 4.32291 4.37932 4.43261 4.56008 4.57202 4.60375 4.61810 4.65895 4.69513 4.76861 4.80511 4.83684 4.84287 4.90350 4.92056 4.96304 4.99455 5.03398 5.06475 5.16048 5.18786 5.25057 5.38226 5.45942 5.62346 5.84855 5.97255 6.16586 6.24654 6.37509 6.62387 6.73387 7.21943 7.47229 8.82849 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016795 B = 0.002993 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.761976 B = 9352.442219 C = 9548.568704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.076 3.924 3 H 0.120 0.880 4 C 0.502 3.498 5 O -0.575 6.575 6 N -0.607 5.607 7 C 0.074 3.926 8 C 0.226 3.774 9 C -0.534 4.534 10 H 0.027 0.973 11 C 0.010 3.990 12 N -0.946 5.946 13 Si 0.949 3.051 14 H -0.278 1.278 15 H -0.275 1.275 16 H -0.236 1.236 17 N -0.534 5.534 18 C 0.029 3.971 19 C 0.092 3.908 20 H 0.042 0.958 21 C -0.135 4.135 22 O -0.368 6.368 23 C 0.091 3.909 24 C -0.103 4.103 25 C -0.145 4.145 26 C 0.049 3.951 27 O -0.402 6.402 28 C 0.046 3.954 29 C 0.033 3.967 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.053 0.947 33 H 0.084 0.916 34 H 0.065 0.935 35 H 0.089 0.911 36 H 0.050 0.950 37 H 0.016 0.984 38 H 0.268 0.732 39 H 0.072 0.928 40 H 0.053 0.947 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.072 0.928 44 H 0.099 0.901 45 H 0.085 0.915 46 H 0.099 0.901 47 H 0.060 0.940 48 H 0.101 0.899 49 H 0.061 0.939 50 H 0.077 0.923 51 H 0.066 0.934 52 H 0.100 0.900 53 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.102 3.523 -22.513 27.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.035 4.035 3 H 0.137 0.863 4 C 0.291 3.709 5 O -0.455 6.455 6 N -0.339 5.339 7 C -0.067 4.067 8 C 0.104 3.896 9 C -0.573 4.573 10 H 0.045 0.955 11 C -0.188 4.188 12 N -0.587 5.587 13 Si 0.771 3.229 14 H -0.204 1.204 15 H -0.200 1.200 16 H -0.159 1.159 17 N -0.258 5.258 18 C -0.099 4.099 19 C 0.034 3.966 20 H 0.060 0.940 21 C -0.193 4.193 22 O -0.288 6.288 23 C 0.051 3.949 24 C -0.141 4.141 25 C -0.183 4.183 26 C -0.027 4.027 27 O -0.322 6.322 28 C -0.031 4.031 29 C -0.095 4.095 30 H 0.114 0.886 31 H 0.108 0.892 32 H 0.072 0.928 33 H 0.102 0.898 34 H 0.084 0.916 35 H 0.108 0.892 36 H 0.068 0.932 37 H 0.035 0.965 38 H 0.077 0.923 39 H 0.091 0.909 40 H 0.071 0.929 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.091 0.909 44 H 0.117 0.883 45 H 0.103 0.897 46 H 0.117 0.883 47 H 0.079 0.921 48 H 0.119 0.881 49 H 0.080 0.920 50 H 0.096 0.904 51 H 0.084 0.916 52 H 0.119 0.881 53 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -14.109 2.726 -22.533 26.725 hybrid contribution -0.033 -0.249 1.239 1.264 sum -14.141 2.477 -21.294 25.681 Atomic orbital electron populations 1.22595 0.92781 1.03321 1.05585 1.21576 0.96075 0.98347 0.87534 0.86259 1.21110 0.79897 0.84737 0.85200 1.90609 1.39157 1.28990 1.86698 1.47901 1.50585 1.29751 1.05627 1.22141 0.94377 0.86472 1.03753 1.19293 0.93558 0.92697 0.84088 1.21567 1.05135 1.19165 1.11424 0.95465 1.25866 0.95053 0.99408 0.98496 1.70053 1.16688 1.44373 1.27541 0.85708 0.80731 0.78722 0.77714 1.20402 1.20034 1.15940 1.61966 1.59351 1.02844 1.01672 1.22832 0.97146 0.90493 0.99443 1.22061 0.98548 0.91807 0.84204 0.93954 1.21669 1.01323 0.93441 1.02822 1.87963 1.76678 1.24813 1.39332 1.22198 0.92699 0.83955 0.96083 1.21619 1.02623 0.98574 0.91261 1.22073 0.95491 1.01847 0.98868 1.22833 0.96054 0.97329 0.86480 1.87946 1.77271 1.51092 1.15842 1.23010 0.93320 0.98692 0.88089 1.22828 1.00759 0.97602 0.88282 0.88598 0.89228 0.92772 0.89817 0.91648 0.89241 0.93177 0.96549 0.92315 0.90930 0.92901 0.91045 0.91320 0.90864 0.88304 0.89652 0.88270 0.92084 0.88094 0.92040 0.90445 0.91595 0.88126 0.91707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.55 8.06 71.98 0.58 -2.97 16 2 C 0.08 2.08 1.93 44.17 0.09 2.17 16 3 H 0.12 2.88 7.30 -2.39 -0.02 2.87 16 4 C 0.50 20.05 6.78 87.66 0.59 20.64 16 5 O -0.58 -28.85 13.93 -3.04 -0.04 -28.89 16 6 N -0.61 -24.00 2.86 -851.12 -2.43 -26.43 16 7 C 0.07 1.99 8.80 127.77 1.12 3.12 16 8 C 0.23 10.97 4.23 85.63 0.36 11.33 16 9 C -0.53 -31.66 9.94 25.60 0.25 -31.41 16 10 H 0.03 1.81 8.06 -2.91 -0.02 1.78 16 11 C 0.01 0.57 5.47 84.65 0.46 1.03 16 12 N -0.95 -60.51 13.96 21.45 0.30 -60.21 16 13 Si 0.95 44.81 27.47 68.60 1.88 46.70 16 14 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 15 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 16 H -0.24 -9.93 6.54 99.48 0.65 -9.28 16 17 N -0.53 -15.02 3.83 -874.51 -3.35 -18.38 16 18 C 0.03 0.83 3.93 86.31 0.34 1.17 16 19 C 0.09 2.56 3.03 30.62 0.09 2.65 16 20 H 0.04 1.42 6.45 -2.39 -0.02 1.40 16 21 C -0.14 -3.09 9.57 71.98 0.69 -2.40 16 22 O -0.37 -9.46 9.34 -141.86 -1.33 -10.79 16 23 C 0.09 1.96 0.71 -10.75 -0.01 1.96 16 24 C -0.10 -1.53 5.04 30.69 0.15 -1.37 16 25 C -0.15 -2.15 5.98 30.69 0.18 -1.97 16 26 C 0.05 0.87 6.84 72.01 0.49 1.36 16 27 O -0.40 -10.80 10.70 -141.86 -1.52 -12.32 16 28 C 0.05 1.20 5.16 71.99 0.37 1.57 16 29 C 0.03 0.67 4.09 86.28 0.35 1.02 16 30 H 0.10 1.57 4.53 -2.38 -0.01 1.56 16 31 H 0.09 1.28 6.74 -2.39 -0.02 1.26 16 32 H 0.05 1.18 6.38 -2.39 -0.02 1.16 16 33 H 0.08 1.67 6.95 -2.39 -0.02 1.65 16 34 H 0.06 1.90 8.07 -2.38 -0.02 1.88 16 35 H 0.09 1.87 6.01 -2.39 -0.01 1.85 16 36 H 0.05 2.22 7.13 -2.38 -0.02 2.20 16 37 H 0.02 0.86 6.85 -2.39 -0.02 0.84 16 38 H 0.27 15.92 8.31 -92.72 -0.77 15.15 16 39 H 0.07 2.63 5.88 -2.39 -0.01 2.62 16 40 H 0.05 1.35 6.37 -2.39 -0.02 1.34 16 41 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.07 1.65 8.14 -2.39 -0.02 1.64 16 44 H 0.10 1.06 8.14 -2.39 -0.02 1.05 16 45 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 46 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 47 H 0.06 1.15 7.84 -2.39 -0.02 1.13 16 48 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 49 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 50 H 0.08 2.55 6.09 -2.39 -0.01 2.54 16 51 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 52 H 0.10 1.73 8.09 -2.39 -0.02 1.71 16 53 H 0.06 1.12 6.72 -2.39 -0.02 1.10 16 Total: -1.00 -81.03 389.44 0.49 -80.55 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: 0.84 Total: 21.88 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: 6.13 Total: 7.89 kcal Atomic # 7 Polarization: -99.53 SS G_CDS: -5.49 Total: -105.01 kcal Atomic # 8 Polarization: -49.11 SS G_CDS: -2.89 Total: -52.00 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.88 Total: 46.70 kcal Total: -81.03 0.49 -80.55 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366573360.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.275 kcal (2) G-P(sol) polarization free energy of solvation -81.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds