Wall clock time and date at job start Wed Apr 1 2020 00:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.51177 * 2 1 4 4 C 1.53097 * 109.54735 * 239.87206 * 2 1 3 5 5 N 1.47018 * 109.28742 * 183.16736 * 4 2 1 6 6 C 1.46904 * 110.99855 * 182.40596 * 5 4 2 7 7 C 1.52998 * 109.46871 * 46.38019 * 6 5 4 8 8 C 1.50703 * 109.47219 * 179.97438 * 7 6 5 9 9 O 1.21287 * 119.99553 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00320 * 180.02562 * 8 7 6 11 11 C 1.46497 * 119.99637 * 359.97438 * 10 8 7 12 12 C 1.46499 * 119.99751 * 180.02562 * 10 8 7 13 13 C 1.50701 * 109.47260 * 89.99944 * 12 10 8 14 14 H 1.08002 * 119.99761 * 359.97438 * 13 12 10 15 15 C 1.37871 * 119.99694 * 180.27562 * 13 12 10 16 16 N 1.31514 * 120.00482 * 359.71466 * 15 13 12 17 17 Si 1.86801 * 119.99746 * 179.72062 * 15 13 12 18 18 H 1.48504 * 109.47209 * 89.99886 * 17 15 13 19 19 H 1.48501 * 109.47358 * 209.99377 * 17 15 13 20 20 H 1.48496 * 109.47341 * 329.99989 * 17 15 13 21 21 C 1.47036 * 110.74279 * 58.64360 * 5 4 2 22 22 C 1.53021 * 109.24096 * 301.48710 * 21 5 4 23 23 C 1.53100 * 109.49286 * 296.75973 * 22 21 5 24 24 C 1.53191 * 109.02737 * 183.06100 * 23 22 21 25 25 C 1.53099 * 109.14336 * 56.90705 * 24 23 22 26 26 O 1.42899 * 109.44231 * 302.36170 * 25 24 23 27 27 C 1.42918 * 114.09438 * 61.16678 * 26 25 24 28 28 O 1.42930 * 109.41361 * 56.74665 * 22 21 5 29 29 H 1.09003 * 109.47111 * 299.91064 * 1 2 3 30 30 H 1.09001 * 109.46908 * 59.91311 * 1 2 3 31 31 H 1.09001 * 109.47365 * 179.91632 * 1 2 3 32 32 H 1.09003 * 109.49984 * 63.23135 * 4 2 1 33 33 H 1.08998 * 109.50472 * 303.11714 * 4 2 1 34 34 H 1.08998 * 109.47166 * 286.38281 * 6 5 4 35 35 H 1.08996 * 109.46807 * 166.37838 * 6 5 4 36 36 H 1.09003 * 109.47453 * 60.00010 * 7 6 5 37 37 H 1.09001 * 109.47698 * 299.99699 * 7 6 5 38 38 H 1.09005 * 109.46868 * 270.00219 * 11 10 8 39 39 H 1.08999 * 109.47518 * 29.99982 * 11 10 8 40 40 H 1.08995 * 109.46848 * 150.00638 * 11 10 8 41 41 H 1.09000 * 109.47197 * 329.98950 * 12 10 8 42 42 H 1.09007 * 109.46342 * 209.99522 * 12 10 8 43 43 H 0.96995 * 120.00207 * 179.97438 * 16 15 13 44 44 H 1.08997 * 109.50907 * 61.41344 * 21 5 4 45 45 H 1.08997 * 109.51059 * 181.51444 * 21 5 4 46 46 H 1.09001 * 109.54912 * 302.92665 * 23 22 21 47 47 H 1.09000 * 109.54677 * 63.20042 * 23 22 21 48 48 H 1.09007 * 109.52479 * 176.80475 * 24 23 22 49 49 H 1.08999 * 109.53176 * 297.00664 * 24 23 22 50 50 H 1.09001 * 109.47596 * 62.35116 * 25 24 23 51 51 H 1.09003 * 109.47351 * 182.36263 * 25 24 23 52 52 H 1.09002 * 109.47768 * 178.97551 * 27 26 25 53 53 H 1.08996 * 109.48322 * 58.94253 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0422 -0.7242 -1.2478 5 7 3.5104 -0.7875 -1.2042 6 6 4.0459 -1.4259 -2.4140 7 6 3.3607 -0.8356 -3.6480 8 6 3.9106 -1.4901 -4.8892 9 8 4.7666 -2.3442 -4.7959 10 7 3.4518 -1.1255 -6.1030 11 6 2.4183 -0.0934 -6.2156 12 6 3.9860 -1.7622 -7.3094 13 6 3.1616 -2.9791 -7.6422 14 1 2.3239 -3.2512 -7.0173 15 6 3.4808 -3.7484 -8.7409 16 7 4.5011 -3.4172 -9.5018 17 14 2.4637 -5.2612 -9.1490 18 1 1.3479 -4.8790 -10.0513 19 1 3.3225 -6.2680 -9.8230 20 1 1.9122 -5.8393 -7.8973 21 6 3.9657 -1.4871 0.0063 22 6 3.4327 -0.7573 1.2411 23 6 4.0225 0.6545 1.2944 24 6 3.5430 1.3482 2.5734 25 6 3.9454 0.5023 3.7844 26 8 3.3878 -0.8072 3.6562 27 6 3.8368 -1.5222 2.5031 28 8 2.0076 -0.6759 1.1666 29 1 -0.3633 0.5125 0.8908 30 1 -0.3633 0.5152 -0.8892 31 1 -0.3634 -1.0277 -0.0015 32 1 1.7278 -0.1805 -2.1388 33 1 1.6350 -1.7348 -1.2750 34 1 3.8578 -2.4987 -2.3723 35 1 5.1195 -1.2473 -2.4741 36 1 3.5488 0.2373 -3.6898 37 1 2.2871 -1.0142 -3.5880 38 1 1.4337 -0.5604 -6.1854 39 1 2.5133 0.6080 -5.3867 40 1 2.5387 0.4398 -7.1586 41 1 5.0200 -2.0601 -7.1356 42 1 3.9456 -1.0577 -8.1402 43 1 4.7258 -3.9587 -10.2745 44 1 3.5905 -2.5104 -0.0019 45 1 5.0553 -1.4989 0.0318 46 1 5.1109 0.5952 1.2979 47 1 3.6897 1.2219 0.4252 48 1 4.0035 2.3334 2.6480 49 1 2.4584 1.4530 2.5464 50 1 5.0320 0.4314 3.8333 51 1 3.5702 0.9697 4.6949 52 1 3.3815 -2.5125 2.4893 53 1 4.9217 -1.6212 2.5363 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000366575177.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:52 Heat of formation + Delta-G solvation = -143.308195 kcal Electronic energy + Delta-G solvation = -31373.253296 eV Core-core repulsion = 27244.076727 eV Total energy + Delta-G solvation = -4129.176568 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.76957 -40.69522 -39.17367 -37.14441 -36.54174 -34.78471 -34.65302 -33.33585 -32.53816 -30.79187 -29.58086 -27.81058 -27.37877 -26.52363 -26.16592 -24.74967 -23.24203 -22.87589 -21.83381 -20.35624 -19.91488 -18.73742 -18.18491 -17.65480 -17.32884 -17.09964 -16.95936 -16.94325 -16.38073 -16.16470 -15.99692 -15.88898 -15.65634 -15.11605 -14.86534 -14.45227 -14.20759 -13.95267 -13.82175 -13.70016 -13.67102 -13.48963 -13.44336 -13.35780 -13.24702 -12.94359 -12.88798 -12.82003 -12.74880 -12.55819 -12.33774 -12.22848 -12.02807 -11.96470 -11.82089 -11.73436 -11.59893 -11.13610 -10.66331 -10.63301 -10.45826 -10.35048 -9.46760 -9.42953 -8.24811 -6.39696 1.34043 1.37060 1.47146 1.81238 2.22834 2.37775 2.56150 2.78592 3.04457 3.05591 3.60114 3.70839 3.72943 3.82726 3.87834 3.94278 4.04535 4.07755 4.15230 4.21881 4.33731 4.37051 4.38354 4.41858 4.50424 4.54259 4.60912 4.64871 4.70159 4.72812 4.74573 4.76600 4.87213 4.92563 4.92758 4.95368 4.98037 5.03113 5.07583 5.08878 5.20688 5.25009 5.32116 5.36724 5.53934 5.81659 5.82223 5.87770 6.03817 6.19940 6.36047 6.67039 6.77233 7.25916 7.46133 8.82188 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.021172 B = 0.002224 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.162019 B =12585.591462 C =12678.540767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.087 3.913 3 H 0.074 0.926 4 C 0.012 3.988 5 N -0.524 5.524 6 C 0.081 3.919 7 C -0.121 4.121 8 C 0.495 3.505 9 O -0.601 6.601 10 N -0.611 5.611 11 C 0.079 3.921 12 C 0.258 3.742 13 C -0.542 4.542 14 H 0.051 0.949 15 C 0.006 3.994 16 N -0.928 5.928 17 Si 0.967 3.033 18 H -0.262 1.262 19 H -0.280 1.280 20 H -0.274 1.274 21 C 0.029 3.971 22 C 0.093 3.907 23 C -0.135 4.135 24 C -0.147 4.147 25 C 0.053 3.947 26 O -0.394 6.394 27 C 0.075 3.925 28 O -0.379 6.379 29 H 0.066 0.934 30 H 0.092 0.908 31 H 0.053 0.947 32 H 0.108 0.892 33 H 0.029 0.971 34 H 0.019 0.981 35 H 0.075 0.925 36 H 0.127 0.873 37 H 0.110 0.890 38 H 0.058 0.942 39 H 0.103 0.897 40 H 0.070 0.930 41 H -0.003 1.003 42 H 0.025 0.975 43 H 0.267 0.733 44 H 0.033 0.967 45 H 0.095 0.905 46 H 0.079 0.921 47 H 0.079 0.921 48 H 0.090 0.910 49 H 0.061 0.939 50 H 0.062 0.938 51 H 0.103 0.897 52 H 0.094 0.906 53 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.975 13.668 25.157 29.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.030 3.970 3 H 0.092 0.908 4 C -0.116 4.116 5 N -0.248 5.248 6 C -0.047 4.047 7 C -0.161 4.161 8 C 0.284 3.716 9 O -0.483 6.483 10 N -0.342 5.342 11 C -0.063 4.063 12 C 0.136 3.864 13 C -0.581 4.581 14 H 0.069 0.931 15 C -0.193 4.193 16 N -0.568 5.568 17 Si 0.792 3.208 18 H -0.187 1.187 19 H -0.206 1.206 20 H -0.199 1.199 21 C -0.100 4.100 22 C 0.053 3.947 23 C -0.172 4.172 24 C -0.185 4.185 25 C -0.023 4.023 26 O -0.312 6.312 27 C -0.002 4.002 28 O -0.298 6.298 29 H 0.086 0.914 30 H 0.111 0.889 31 H 0.072 0.928 32 H 0.126 0.874 33 H 0.047 0.953 34 H 0.037 0.963 35 H 0.093 0.907 36 H 0.145 0.855 37 H 0.128 0.872 38 H 0.076 0.924 39 H 0.121 0.879 40 H 0.089 0.911 41 H 0.015 0.985 42 H 0.043 0.957 43 H 0.076 0.924 44 H 0.052 0.948 45 H 0.113 0.887 46 H 0.098 0.902 47 H 0.097 0.903 48 H 0.108 0.892 49 H 0.080 0.920 50 H 0.081 0.919 51 H 0.121 0.879 52 H 0.112 0.888 53 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.524 13.535 25.313 29.231 hybrid contribution -0.059 -1.850 -1.326 2.277 sum -5.583 11.685 23.987 27.260 Atomic orbital electron populations 1.21753 0.91685 1.02774 1.03642 1.22280 0.95537 0.95808 0.83389 0.90775 1.23089 0.87542 1.00185 1.00825 1.62350 1.09297 1.51875 1.01276 1.21675 0.99713 0.95360 0.87972 1.21718 1.01998 1.02766 0.89626 1.21325 0.81949 0.82513 0.85858 1.90641 1.35121 1.35167 1.87361 1.48198 1.40078 1.39441 1.06507 1.21949 0.90255 0.90055 1.04023 1.18778 0.93400 0.92267 0.81932 1.21685 1.14290 1.11369 1.10754 0.93070 1.25869 0.96449 1.01005 0.95946 1.70044 1.28725 1.40862 1.17137 0.85419 0.78629 0.78499 0.78279 1.18663 1.20574 1.19939 1.22719 1.01756 0.95528 0.89966 1.22149 0.81710 0.96478 0.94408 1.22030 1.01230 0.94967 0.98995 1.22097 1.01904 0.99874 0.94608 1.22793 0.98232 0.82452 0.98843 1.87952 1.70568 1.29002 1.43713 1.22585 0.99783 0.95105 0.82767 1.88059 1.20227 1.78349 1.43188 0.91448 0.88932 0.92784 0.87386 0.95251 0.96269 0.90670 0.85493 0.87179 0.92379 0.87902 0.91146 0.98508 0.95723 0.92362 0.94843 0.88695 0.90203 0.90285 0.89192 0.92043 0.91945 0.87861 0.88814 0.89716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.57 71.98 0.69 -1.32 16 2 C 0.09 1.52 3.03 30.63 0.09 1.62 16 3 H 0.07 1.20 6.43 -2.39 -0.02 1.19 16 4 C 0.01 0.22 4.23 86.31 0.36 0.58 16 5 N -0.52 -11.10 4.31 -895.31 -3.86 -14.96 16 6 C 0.08 2.19 4.57 86.30 0.39 2.58 16 7 C -0.12 -3.19 3.52 29.85 0.11 -3.08 16 8 C 0.49 20.17 7.67 87.66 0.67 20.84 16 9 O -0.60 -31.13 15.56 -3.05 -0.05 -31.18 16 10 N -0.61 -25.60 2.86 -851.12 -2.43 -28.03 16 11 C 0.08 2.24 10.29 127.77 1.31 3.55 16 12 C 0.26 13.99 5.20 85.63 0.45 14.44 16 13 C -0.54 -31.54 9.39 25.60 0.24 -31.30 16 14 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 15 C 0.01 0.36 5.46 84.65 0.46 0.83 16 16 N -0.93 -56.48 13.29 21.45 0.28 -56.20 16 17 Si 0.97 45.22 29.54 68.60 2.03 47.25 16 18 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 19 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 20 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 21 C 0.03 0.58 4.33 86.28 0.37 0.96 16 22 C 0.09 1.69 0.71 -10.75 -0.01 1.69 16 23 C -0.13 -2.05 4.40 30.69 0.13 -1.91 16 24 C -0.15 -1.95 5.98 30.69 0.18 -1.77 16 25 C 0.05 0.71 6.84 72.02 0.49 1.21 16 26 O -0.39 -7.77 10.70 -141.98 -1.52 -9.29 16 27 C 0.07 1.30 5.81 71.98 0.42 1.71 16 28 O -0.38 -8.12 9.35 -141.98 -1.33 -9.45 16 29 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.11 1.68 6.05 -2.39 -0.01 1.67 16 33 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.02 0.61 8.04 -2.39 -0.02 0.59 16 35 H 0.07 2.20 8.10 -2.39 -0.02 2.18 16 36 H 0.13 2.57 7.40 -2.39 -0.02 2.55 16 37 H 0.11 2.45 6.24 -2.39 -0.01 2.44 16 38 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 39 H 0.10 1.95 6.44 -2.39 -0.02 1.93 16 40 H 0.07 1.96 7.89 -2.39 -0.02 1.94 16 41 H 0.00 -0.20 7.42 -2.39 -0.02 -0.22 16 42 H 0.02 1.35 7.89 -2.38 -0.02 1.33 16 43 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 44 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 47 H 0.08 1.30 6.07 -2.39 -0.01 1.29 16 48 H 0.09 0.86 8.14 -2.38 -0.02 0.85 16 49 H 0.06 1.00 7.83 -2.39 -0.02 0.98 16 50 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 51 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 52 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 53 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -77.43 405.67 0.37 -77.05 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: 0.87 Total: 14.17 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: 6.38 Total: 10.62 kcal Atomic # 7 Polarization: -93.18 SS G_CDS: -6.00 Total: -99.18 kcal Atomic # 8 Polarization: -47.02 SS G_CDS: -2.89 Total: -49.91 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -77.43 0.37 -77.05 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366575177.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.256 kcal (2) G-P(sol) polarization free energy of solvation -77.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds