Wall clock time and date at job start Wed Apr 1 2020 00:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.50887 * 2 1 4 4 C 1.53100 * 109.51076 * 120.13845 * 2 1 3 5 5 N 1.47015 * 109.29023 * 176.81248 * 4 2 1 6 6 C 1.46897 * 110.99896 * 177.59707 * 5 4 2 7 7 C 1.53002 * 109.47305 * 313.62448 * 6 5 4 8 8 C 1.50706 * 109.47111 * 180.02562 * 7 6 5 9 9 O 1.21286 * 119.99742 * 0.02562 * 8 7 6 10 10 N 1.34768 * 120.00003 * 180.02562 * 8 7 6 11 11 C 1.46506 * 120.00014 * 359.97438 * 10 8 7 12 12 C 1.46496 * 120.00037 * 180.02562 * 10 8 7 13 13 C 1.50700 * 109.47637 * 89.99910 * 12 10 8 14 14 H 1.08003 * 119.99272 * 0.02562 * 13 12 10 15 15 C 1.37873 * 120.00483 * 179.97438 * 13 12 10 16 16 N 1.31519 * 119.99727 * 0.02562 * 15 13 12 17 17 Si 1.86791 * 120.00190 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47343 * 90.00346 * 17 15 13 19 19 H 1.48504 * 109.47394 * 210.00430 * 17 15 13 20 20 H 1.48502 * 109.47149 * 330.00067 * 17 15 13 21 21 C 1.47027 * 110.74532 * 301.36898 * 5 4 2 22 22 C 1.53010 * 109.25516 * 58.49912 * 21 5 4 23 23 C 1.53086 * 109.54761 * 183.22701 * 22 21 5 24 24 C 1.53198 * 109.02676 * 183.06848 * 23 22 21 25 25 C 1.53095 * 109.15245 * 56.88495 * 24 23 22 26 26 O 1.42894 * 109.45144 * 302.38242 * 25 24 23 27 27 C 1.42923 * 114.08650 * 61.16944 * 26 25 24 28 28 O 1.42938 * 109.41483 * 303.27271 * 22 21 5 29 29 H 1.09002 * 109.47153 * 180.09288 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.09479 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.09460 * 1 2 3 32 32 H 1.09000 * 109.50646 * 296.75826 * 4 2 1 33 33 H 1.09006 * 109.50075 * 56.87110 * 4 2 1 34 34 H 1.08997 * 109.47627 * 73.62812 * 6 5 4 35 35 H 1.09012 * 109.46965 * 193.62928 * 6 5 4 36 36 H 1.08997 * 109.47324 * 300.00212 * 7 6 5 37 37 H 1.08995 * 109.46904 * 60.00284 * 7 6 5 38 38 H 1.08996 * 109.47033 * 90.00327 * 11 10 8 39 39 H 1.08997 * 109.47229 * 210.00268 * 11 10 8 40 40 H 1.08997 * 109.47203 * 329.99888 * 11 10 8 41 41 H 1.09006 * 109.47201 * 209.99689 * 12 10 8 42 42 H 1.08997 * 109.47127 * 329.99614 * 12 10 8 43 43 H 0.96997 * 119.99927 * 179.97438 * 16 15 13 44 44 H 1.09000 * 109.50834 * 298.56349 * 21 5 4 45 45 H 1.09007 * 109.50945 * 178.42891 * 21 5 4 46 46 H 1.09003 * 109.54529 * 302.93271 * 23 22 21 47 47 H 1.09005 * 109.54531 * 63.20575 * 23 22 21 48 48 H 1.09005 * 109.52435 * 176.78680 * 24 23 22 49 49 H 1.08998 * 109.52118 * 296.98393 * 24 23 22 50 50 H 1.09002 * 109.46963 * 62.37583 * 25 24 23 51 51 H 1.08999 * 109.47287 * 182.38582 * 25 24 23 52 52 H 1.08998 * 109.48180 * 178.95417 * 27 26 25 53 53 H 1.08996 * 109.48301 * 58.91039 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0413 -0.7246 1.2480 5 7 3.5094 -0.7888 1.2050 6 6 4.0440 -1.4277 2.4149 7 6 3.3586 -0.8372 3.6488 8 6 3.9076 -1.4923 4.8901 9 8 4.7632 -2.3469 4.7969 10 7 3.4478 -1.1285 6.1035 11 6 2.4148 -0.0957 6.2160 12 6 3.9819 -1.7648 7.3102 13 6 5.1715 -0.9836 7.8057 14 1 5.4969 -0.1010 7.2750 15 6 5.8438 -1.3949 8.9370 16 7 5.4471 -2.4693 9.5834 17 14 7.3188 -0.4269 9.5507 18 1 6.8638 0.6181 10.5027 19 1 8.2626 -1.3451 10.2374 20 1 8.0027 0.2158 8.3998 21 6 3.9649 -1.4883 -0.0054 22 6 3.4328 -0.7583 -1.2404 23 6 3.8354 -1.5260 -2.5022 24 6 3.3637 -0.7457 -3.7333 25 6 3.9596 0.6640 -3.6933 26 8 3.5702 1.3109 -2.4801 27 6 4.0242 0.6519 -1.2959 28 8 2.0077 -0.6759 -1.1664 29 1 -0.3633 -1.0277 0.0017 30 1 -0.3633 0.5124 -0.8909 31 1 -0.3634 0.5153 0.8892 32 1 1.7268 -0.1810 2.1389 33 1 1.6335 -1.7351 1.2748 34 1 3.8555 -2.5004 2.3730 35 1 5.1178 -1.2496 2.4756 36 1 3.5472 0.2355 3.6908 37 1 2.2851 -1.0153 3.5881 38 1 1.4301 -0.5620 6.1845 39 1 2.5346 0.4368 7.1595 40 1 2.5111 0.6063 5.3879 41 1 3.2124 -1.7834 8.0821 42 1 4.2882 -2.7847 7.0779 43 1 5.9203 -2.7589 10.3791 44 1 3.5894 -2.5115 0.0025 45 1 5.0546 -1.4999 -0.0308 46 1 4.9196 -1.6345 -2.5326 47 1 3.3690 -2.5111 -2.4941 48 1 3.6960 -1.2561 -4.6374 49 1 2.2756 -0.6815 -3.7290 50 1 5.0468 0.6003 -3.7384 51 1 3.5934 1.2375 -4.5447 52 1 3.7029 1.2157 -0.4202 53 1 5.1123 0.5894 -1.3092 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000366575178.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:56 Heat of formation + Delta-G solvation = -143.875559 kcal Electronic energy + Delta-G solvation = -31349.939910 eV Core-core repulsion = 27220.738739 eV Total energy + Delta-G solvation = -4129.201171 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.76582 -40.68922 -39.10963 -37.11644 -36.53374 -35.02968 -34.74635 -33.05667 -32.55881 -30.74936 -29.55375 -27.82474 -27.37381 -26.50126 -26.19055 -24.80839 -23.40763 -22.81275 -21.52354 -20.57070 -19.91898 -18.71421 -18.12548 -17.77019 -17.30633 -17.11646 -17.00390 -16.78429 -16.49892 -16.07648 -15.97492 -15.83893 -15.61779 -15.03886 -14.85882 -14.52536 -14.22590 -14.03176 -13.88504 -13.63147 -13.61339 -13.49152 -13.44722 -13.40826 -13.18574 -13.00806 -12.89606 -12.80559 -12.62681 -12.53032 -12.37250 -12.21773 -12.07347 -12.01631 -11.84684 -11.71383 -11.45623 -11.23644 -10.73227 -10.65252 -10.62022 -10.12962 -9.45270 -9.41685 -8.23635 -6.38640 1.35879 1.38897 1.49260 1.81961 2.24135 2.39509 2.61659 2.79657 3.00716 3.05855 3.61875 3.66090 3.70962 3.80620 3.89093 3.93621 4.02901 4.08491 4.12707 4.22134 4.33074 4.36282 4.39326 4.44059 4.53413 4.56868 4.60816 4.65271 4.68737 4.72490 4.75231 4.82761 4.88107 4.89531 4.93666 4.97016 4.98775 5.02204 5.05166 5.10433 5.18617 5.21545 5.31146 5.36295 5.54979 5.82031 5.82765 5.87737 6.04784 6.17180 6.39138 6.68465 6.78102 7.27045 7.46876 8.83446 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.020023 B = 0.002257 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.029526 B =12405.459631 C =12971.017243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.086 3.914 3 H 0.068 0.932 4 C 0.013 3.987 5 N -0.532 5.532 6 C 0.082 3.918 7 C -0.122 4.122 8 C 0.495 3.505 9 O -0.601 6.601 10 N -0.611 5.611 11 C 0.077 3.923 12 C 0.258 3.742 13 C -0.542 4.542 14 H 0.053 0.947 15 C 0.005 3.995 16 N -0.929 5.929 17 Si 0.969 3.031 18 H -0.262 1.262 19 H -0.281 1.281 20 H -0.272 1.272 21 C 0.030 3.970 22 C 0.094 3.906 23 C -0.110 4.110 24 C -0.145 4.145 25 C 0.052 3.948 26 O -0.396 6.396 27 C 0.048 3.952 28 O -0.377 6.377 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.092 0.908 32 H 0.109 0.891 33 H 0.036 0.964 34 H 0.025 0.975 35 H 0.070 0.930 36 H 0.120 0.880 37 H 0.117 0.883 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.097 0.903 41 H 0.023 0.977 42 H -0.004 1.004 43 H 0.267 0.733 44 H 0.039 0.961 45 H 0.092 0.908 46 H 0.093 0.907 47 H 0.073 0.927 48 H 0.093 0.907 49 H 0.062 0.938 50 H 0.060 0.940 51 H 0.104 0.896 52 H 0.100 0.900 53 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.538 8.091 -26.655 29.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.029 3.971 3 H 0.085 0.915 4 C -0.115 4.115 5 N -0.256 5.256 6 C -0.046 4.046 7 C -0.162 4.162 8 C 0.283 3.717 9 O -0.483 6.483 10 N -0.342 5.342 11 C -0.065 4.065 12 C 0.136 3.864 13 C -0.580 4.580 14 H 0.072 0.928 15 C -0.193 4.193 16 N -0.569 5.569 17 Si 0.793 3.207 18 H -0.187 1.187 19 H -0.207 1.207 20 H -0.197 1.197 21 C -0.098 4.098 22 C 0.054 3.946 23 C -0.148 4.148 24 C -0.183 4.183 25 C -0.024 4.024 26 O -0.315 6.315 27 C -0.028 4.028 28 O -0.297 6.297 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.111 0.889 32 H 0.127 0.873 33 H 0.054 0.946 34 H 0.043 0.957 35 H 0.088 0.912 36 H 0.138 0.862 37 H 0.135 0.865 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.115 0.885 41 H 0.041 0.959 42 H 0.014 0.986 43 H 0.076 0.924 44 H 0.057 0.943 45 H 0.110 0.890 46 H 0.111 0.889 47 H 0.091 0.909 48 H 0.112 0.888 49 H 0.081 0.919 50 H 0.078 0.922 51 H 0.122 0.878 52 H 0.118 0.882 53 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.143 8.126 -26.677 29.348 hybrid contribution 0.917 -1.190 1.195 1.920 sum -8.226 6.935 -25.482 27.660 Atomic orbital electron populations 1.21730 0.91385 1.02890 1.03613 1.22275 0.95822 0.95586 0.83444 0.91460 1.23091 0.87301 1.00416 1.00688 1.62341 1.09627 1.52187 1.01475 1.21656 0.99522 0.95564 0.87871 1.21720 1.02288 1.02506 0.89639 1.21323 0.81796 0.82670 0.85869 1.90639 1.34484 1.35711 1.87480 1.48201 1.39937 1.39696 1.06386 1.21960 0.89955 0.90552 1.04010 1.18750 0.93374 0.92405 0.81828 1.21695 1.14283 1.11615 1.10426 0.92834 1.25890 1.00577 0.96162 0.96720 1.70056 1.42357 1.25090 1.19409 0.85394 0.78482 0.78441 0.78366 1.18725 1.20675 1.19719 1.22748 1.01661 0.95759 0.89636 1.22101 0.81842 0.95858 0.94800 1.21631 1.02059 0.98939 0.92165 1.22073 1.01630 0.96232 0.98316 1.22788 0.99137 0.93511 0.86978 1.87932 1.78025 1.51108 1.14430 1.23037 0.98566 0.92943 0.88304 1.87997 1.20061 1.78168 1.43442 0.92355 0.91676 0.88927 0.87317 0.94610 0.95657 0.91198 0.86199 0.86481 0.91037 0.91645 0.88502 0.95879 0.98600 0.92402 0.94318 0.88953 0.88856 0.90869 0.88817 0.91875 0.92154 0.87814 0.88241 0.91701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.57 71.98 0.69 -1.25 16 2 C 0.09 1.55 3.03 30.63 0.09 1.64 16 3 H 0.07 1.26 6.45 -2.38 -0.02 1.24 16 4 C 0.01 0.24 4.22 86.31 0.36 0.60 16 5 N -0.53 -11.44 4.30 -895.32 -3.85 -15.29 16 6 C 0.08 2.22 4.57 86.30 0.39 2.62 16 7 C -0.12 -3.22 3.52 29.85 0.11 -3.11 16 8 C 0.49 20.22 7.67 87.66 0.67 20.89 16 9 O -0.60 -31.17 15.56 -3.05 -0.05 -31.22 16 10 N -0.61 -25.67 2.86 -851.14 -2.43 -28.10 16 11 C 0.08 2.20 10.24 127.77 1.31 3.50 16 12 C 0.26 14.04 5.16 85.63 0.44 14.48 16 13 C -0.54 -31.43 9.39 25.60 0.24 -31.19 16 14 H 0.05 3.07 7.81 -2.91 -0.02 3.04 16 15 C 0.01 0.31 5.46 84.65 0.46 0.77 16 16 N -0.93 -56.64 13.29 21.45 0.28 -56.36 16 17 Si 0.97 45.09 29.54 68.60 2.03 47.12 16 18 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 19 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 20 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 21 C 0.03 0.62 4.32 86.28 0.37 0.99 16 22 C 0.09 1.74 0.71 -10.75 -0.01 1.73 16 23 C -0.11 -1.63 5.04 30.69 0.15 -1.47 16 24 C -0.14 -1.92 5.98 30.69 0.18 -1.74 16 25 C 0.05 0.72 6.84 72.01 0.49 1.22 16 26 O -0.40 -8.03 10.70 -141.88 -1.52 -9.55 16 27 C 0.05 0.91 5.16 71.99 0.37 1.28 16 28 O -0.38 -7.97 9.34 -141.88 -1.33 -9.30 16 29 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.09 0.92 8.14 -2.38 -0.02 0.91 16 32 H 0.11 1.64 6.05 -2.39 -0.01 1.62 16 33 H 0.04 0.74 8.14 -2.38 -0.02 0.72 16 34 H 0.03 0.78 8.04 -2.39 -0.02 0.76 16 35 H 0.07 2.15 8.10 -2.38 -0.02 2.13 16 36 H 0.12 2.68 7.40 -2.39 -0.02 2.66 16 37 H 0.12 2.41 6.24 -2.39 -0.01 2.39 16 38 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.06 1.99 8.07 -2.39 -0.02 1.97 16 40 H 0.10 2.01 6.44 -2.39 -0.02 1.99 16 41 H 0.02 1.27 8.07 -2.38 -0.02 1.25 16 42 H 0.00 -0.26 7.42 -2.39 -0.02 -0.28 16 43 H 0.27 15.24 8.31 -92.71 -0.77 14.46 16 44 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 46 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 48 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 49 H 0.06 1.06 7.83 -2.39 -0.02 1.04 16 50 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 51 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 52 H 0.10 2.02 6.09 -2.39 -0.01 2.01 16 53 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -76.95 405.97 0.35 -76.61 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: 0.87 Total: 15.12 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: 6.34 Total: 10.98 kcal Atomic # 7 Polarization: -93.75 SS G_CDS: -6.00 Total: -99.75 kcal Atomic # 8 Polarization: -47.18 SS G_CDS: -2.89 Total: -50.07 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -76.95 0.35 -76.61 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366575178.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.269 kcal (2) G-P(sol) polarization free energy of solvation -76.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds