Wall clock time and date at job start Wed Apr 1 2020 00:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08998 * 109.50698 * 2 1 4 4 C 1.53104 * 109.50546 * 120.13806 * 2 1 3 5 5 N 1.47016 * 109.28441 * 176.81116 * 4 2 1 6 6 C 1.46902 * 111.00111 * 177.59886 * 5 4 2 7 7 C 1.53006 * 109.46626 * 293.62368 * 6 5 4 8 8 C 1.50699 * 109.46866 * 179.97438 * 7 6 5 9 9 O 1.21282 * 120.00041 * 359.97438 * 8 7 6 10 10 N 1.34779 * 120.00037 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99707 * 359.97438 * 10 8 7 12 12 C 1.46500 * 120.00169 * 180.02562 * 10 8 7 13 13 C 1.50702 * 109.46904 * 89.99597 * 12 10 8 14 14 H 1.07993 * 120.00490 * 0.02562 * 13 12 10 15 15 C 1.37881 * 119.99735 * 180.02562 * 13 12 10 16 16 N 1.31512 * 120.00050 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 119.99825 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47522 * 89.99831 * 17 15 13 19 19 H 1.48508 * 109.46941 * 209.99577 * 17 15 13 20 20 H 1.48502 * 109.47592 * 329.99302 * 17 15 13 21 21 C 1.47033 * 110.74485 * 301.36466 * 5 4 2 22 22 C 1.53011 * 109.24748 * 58.50529 * 21 5 4 23 23 C 1.53108 * 109.49666 * 63.24249 * 22 21 5 24 24 C 1.53190 * 109.02667 * 176.96291 * 23 22 21 25 25 C 1.53097 * 109.14140 * 303.09545 * 24 23 22 26 26 O 1.42895 * 109.45071 * 57.62696 * 25 24 23 27 27 C 1.42922 * 114.09713 * 298.84055 * 26 25 24 28 28 O 1.42925 * 109.41742 * 303.25804 * 22 21 5 29 29 H 1.08998 * 109.47093 * 180.10067 * 1 2 3 30 30 H 1.08997 * 109.46953 * 300.09906 * 1 2 3 31 31 H 1.08993 * 109.46965 * 60.09834 * 1 2 3 32 32 H 1.08994 * 109.50167 * 56.86775 * 4 2 1 33 33 H 1.09001 * 109.50147 * 296.74945 * 4 2 1 34 34 H 1.08993 * 109.47737 * 173.62500 * 6 5 4 35 35 H 1.09000 * 109.47263 * 53.62062 * 6 5 4 36 36 H 1.09000 * 109.47050 * 299.99824 * 7 6 5 37 37 H 1.09001 * 109.46801 * 59.99937 * 7 6 5 38 38 H 1.09002 * 109.47085 * 90.00762 * 11 10 8 39 39 H 1.09002 * 109.46740 * 210.00435 * 11 10 8 40 40 H 1.09001 * 109.47266 * 330.00158 * 11 10 8 41 41 H 1.08991 * 109.47410 * 209.99714 * 12 10 8 42 42 H 1.09007 * 109.47039 * 329.99988 * 12 10 8 43 43 H 0.97004 * 119.99848 * 180.02562 * 16 15 13 44 44 H 1.08998 * 109.51162 * 178.43601 * 21 5 4 45 45 H 1.08998 * 109.51346 * 298.57742 * 21 5 4 46 46 H 1.09004 * 109.54582 * 296.82517 * 23 22 21 47 47 H 1.08998 * 109.54638 * 57.00571 * 23 22 21 48 48 H 1.08998 * 109.52847 * 62.98965 * 24 23 22 49 49 H 1.08996 * 109.53003 * 183.19245 * 24 23 22 50 50 H 1.09004 * 109.47263 * 177.62459 * 25 24 23 51 51 H 1.08997 * 109.47521 * 297.62865 * 25 24 23 52 52 H 1.08996 * 109.47980 * 301.05816 * 27 26 25 53 53 H 1.09005 * 109.47836 * 181.02242 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0413 -0.7246 1.2481 5 7 3.5094 -0.7889 1.2050 6 6 4.0441 -1.4278 2.4149 7 6 3.7611 -0.5395 3.6282 8 6 4.3091 -1.1953 4.8695 9 8 4.8702 -2.2676 4.7915 10 7 4.1747 -0.5905 6.0664 11 6 3.4964 0.7046 6.1606 12 6 4.7078 -1.2276 7.2731 13 6 6.1308 -0.7811 7.4900 14 1 6.5917 -0.0914 6.7985 15 6 6.8442 -1.2532 8.5713 16 7 6.2828 -2.0927 9.4137 17 14 8.6076 -0.6992 8.8406 18 1 8.6192 0.5240 9.6825 19 1 9.3664 -1.7775 9.5239 20 1 9.2394 -0.4037 7.5296 21 6 3.9648 -1.4885 -0.0053 22 6 3.4328 -0.7584 -1.2403 23 6 4.0234 0.6532 -1.2934 24 6 3.5443 1.3473 -2.5722 25 6 3.9462 0.5013 -3.7833 26 8 3.3882 -0.8080 -3.6553 27 6 3.8369 -1.5233 -2.5022 28 8 2.0078 -0.6761 -1.1664 29 1 -0.3633 -1.0276 0.0018 30 1 -0.3633 0.5154 0.8891 31 1 -0.3633 0.5123 -0.8908 32 1 1.6335 -1.7350 1.2749 33 1 1.7269 -0.1808 2.1389 34 1 5.1201 -1.5650 2.3082 35 1 3.5664 -2.3974 2.5552 36 1 4.2389 0.4301 3.4879 37 1 2.6851 -0.4024 3.7349 38 1 2.4308 0.5455 6.3261 39 1 3.9123 1.2729 6.9926 40 1 3.6414 1.2590 5.2334 41 1 4.1022 -0.9416 8.1329 42 1 4.6811 -2.3109 7.1541 43 1 6.7846 -2.4245 10.1746 44 1 5.0545 -1.5002 -0.0308 45 1 3.5892 -2.5117 0.0025 46 1 3.6909 1.2206 -0.4240 47 1 5.1118 0.5933 -1.2952 48 1 2.4598 1.4526 -2.5452 49 1 4.0051 2.3322 -2.6467 50 1 3.5711 0.9689 -4.6937 51 1 5.0327 0.4301 -3.8324 52 1 4.9218 -1.6227 -2.5354 53 1 3.3812 -2.5135 -2.4887 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000366575180.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:00 Heat of formation + Delta-G solvation = -145.560273 kcal Electronic energy + Delta-G solvation = -31303.812879 eV Core-core repulsion = 27174.538653 eV Total energy + Delta-G solvation = -4129.274226 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.74700 -40.67168 -39.15685 -37.10192 -36.52222 -34.76405 -34.64446 -33.33326 -32.59415 -30.78953 -29.58212 -27.76092 -27.36855 -26.47560 -26.18158 -24.71773 -23.25931 -22.82567 -21.89534 -20.32384 -19.93603 -18.71261 -18.12338 -17.65422 -17.33126 -17.12807 -16.98236 -16.88159 -16.35259 -16.22940 -15.94513 -15.89775 -15.65654 -15.09370 -14.83183 -14.53204 -14.05278 -13.99005 -13.89613 -13.68494 -13.63087 -13.47326 -13.44550 -13.32940 -13.20113 -12.92574 -12.89469 -12.81049 -12.75224 -12.60356 -12.39695 -12.21641 -12.02444 -11.89006 -11.82525 -11.71024 -11.61275 -11.13740 -10.65487 -10.63345 -10.46101 -10.35137 -9.46524 -9.42270 -8.23611 -6.38680 1.35783 1.38817 1.49162 1.82946 2.22881 2.38886 2.56214 2.79840 3.05462 3.06003 3.61370 3.71573 3.74062 3.83884 3.87997 3.96515 4.04286 4.10482 4.15608 4.22211 4.35303 4.38208 4.38877 4.43225 4.50694 4.54865 4.61565 4.65830 4.70655 4.72265 4.75854 4.77617 4.87237 4.89506 4.94513 4.97371 4.98156 5.04311 5.07485 5.08936 5.21709 5.24758 5.31675 5.36537 5.55116 5.82644 5.83112 5.89143 6.04867 6.19652 6.35778 6.68593 6.78640 7.27132 7.47564 8.83453 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.018774 B = 0.002276 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.059851 B =12301.472480 C =12972.886486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.087 3.913 3 H 0.073 0.927 4 C 0.017 3.983 5 N -0.526 5.526 6 C 0.081 3.919 7 C -0.113 4.113 8 C 0.494 3.506 9 O -0.602 6.602 10 N -0.611 5.611 11 C 0.078 3.922 12 C 0.258 3.742 13 C -0.542 4.542 14 H 0.053 0.947 15 C 0.005 3.995 16 N -0.929 5.929 17 Si 0.969 3.031 18 H -0.262 1.262 19 H -0.281 1.281 20 H -0.272 1.272 21 C 0.029 3.971 22 C 0.093 3.907 23 C -0.136 4.136 24 C -0.147 4.147 25 C 0.053 3.947 26 O -0.393 6.393 27 C 0.075 3.925 28 O -0.377 6.377 29 H 0.054 0.946 30 H 0.091 0.909 31 H 0.066 0.934 32 H 0.031 0.969 33 H 0.103 0.897 34 H 0.068 0.932 35 H 0.024 0.976 36 H 0.118 0.882 37 H 0.114 0.886 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.096 0.904 41 H 0.023 0.977 42 H -0.004 1.004 43 H 0.267 0.733 44 H 0.093 0.907 45 H 0.035 0.965 46 H 0.078 0.922 47 H 0.078 0.922 48 H 0.061 0.939 49 H 0.089 0.911 50 H 0.104 0.896 51 H 0.061 0.939 52 H 0.084 0.916 53 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.024 10.517 -25.089 28.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.030 3.970 3 H 0.091 0.909 4 C -0.111 4.111 5 N -0.250 5.250 6 C -0.047 4.047 7 C -0.153 4.153 8 C 0.283 3.717 9 O -0.484 6.484 10 N -0.342 5.342 11 C -0.064 4.064 12 C 0.136 3.864 13 C -0.580 4.580 14 H 0.072 0.928 15 C -0.194 4.194 16 N -0.569 5.569 17 Si 0.793 3.207 18 H -0.187 1.187 19 H -0.207 1.207 20 H -0.197 1.197 21 C -0.099 4.099 22 C 0.053 3.947 23 C -0.173 4.173 24 C -0.185 4.185 25 C -0.023 4.023 26 O -0.312 6.312 27 C -0.002 4.002 28 O -0.297 6.297 29 H 0.073 0.927 30 H 0.110 0.890 31 H 0.085 0.915 32 H 0.049 0.951 33 H 0.121 0.879 34 H 0.087 0.913 35 H 0.042 0.958 36 H 0.136 0.864 37 H 0.132 0.868 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.115 0.885 41 H 0.041 0.959 42 H 0.014 0.986 43 H 0.076 0.924 44 H 0.111 0.889 45 H 0.054 0.946 46 H 0.097 0.903 47 H 0.097 0.903 48 H 0.080 0.920 49 H 0.107 0.893 50 H 0.122 0.878 51 H 0.080 0.920 52 H 0.102 0.898 53 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.800 10.219 -25.235 28.936 hybrid contribution 0.973 -1.028 1.304 1.924 sum -8.827 9.191 -23.932 27.113 Atomic orbital electron populations 1.21746 0.91626 1.02817 1.03593 1.22273 0.95569 0.95780 0.83413 0.90885 1.23015 0.87299 1.00194 1.00625 1.62204 1.09379 1.52147 1.01280 1.21630 1.00123 0.94507 0.88430 1.21533 1.03635 1.00733 0.89433 1.21362 0.79300 0.85165 0.85855 1.90637 1.45967 1.24889 1.86926 1.48206 1.56166 1.22242 1.07632 1.21951 0.96957 0.83388 1.04106 1.18749 0.93280 0.92265 0.82075 1.21697 0.98931 1.27588 1.09821 0.92826 1.25894 1.03122 0.94850 0.95485 1.70056 1.39181 1.32666 1.15018 0.85392 0.78643 0.78322 0.78314 1.18726 1.20693 1.19684 1.22703 1.01633 0.95665 0.89897 1.22143 0.81713 0.96399 0.94456 1.22037 1.01192 0.95095 0.99010 1.22090 1.01917 0.99845 0.94604 1.22786 0.98196 0.82486 0.98835 1.87949 1.70535 1.28968 1.43734 1.22589 0.99764 0.95139 0.82744 1.88057 1.20184 1.78312 1.43155 0.92651 0.89030 0.91468 0.95054 0.87899 0.91348 0.95775 0.86384 0.86758 0.91079 0.91680 0.88531 0.95896 0.98615 0.92402 0.88854 0.94620 0.90304 0.90334 0.91975 0.89282 0.87837 0.92027 0.89813 0.88655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.57 71.99 0.69 -1.23 16 2 C 0.09 1.49 3.03 30.63 0.09 1.58 16 3 H 0.07 1.19 6.43 -2.39 -0.02 1.17 16 4 C 0.02 0.31 4.72 86.32 0.41 0.72 16 5 N -0.53 -11.09 4.16 -895.32 -3.72 -14.81 16 6 C 0.08 2.19 4.25 86.31 0.37 2.56 16 7 C -0.11 -3.00 4.19 29.85 0.13 -2.87 16 8 C 0.49 20.19 7.67 87.66 0.67 20.86 16 9 O -0.60 -31.21 15.56 -3.04 -0.05 -31.26 16 10 N -0.61 -25.69 2.86 -851.12 -2.43 -28.12 16 11 C 0.08 2.22 10.24 127.77 1.31 3.53 16 12 C 0.26 14.03 5.16 85.63 0.44 14.47 16 13 C -0.54 -31.39 9.39 25.60 0.24 -31.15 16 14 H 0.05 3.07 7.81 -2.91 -0.02 3.04 16 15 C 0.01 0.31 5.46 84.66 0.46 0.77 16 16 N -0.93 -56.61 13.29 21.45 0.28 -56.32 16 17 Si 0.97 44.96 29.54 68.60 2.03 46.99 16 18 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 19 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 20 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 21 C 0.03 0.59 4.35 86.28 0.37 0.96 16 22 C 0.09 1.69 0.71 -10.75 -0.01 1.68 16 23 C -0.14 -2.11 4.40 30.69 0.13 -1.98 16 24 C -0.15 -1.99 5.98 30.69 0.18 -1.81 16 25 C 0.05 0.73 6.84 72.01 0.49 1.22 16 26 O -0.39 -7.73 10.70 -141.94 -1.52 -9.25 16 27 C 0.07 1.29 5.81 71.98 0.42 1.70 16 28 O -0.38 -7.95 9.34 -141.94 -1.33 -9.28 16 29 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.10 1.60 6.38 -2.39 -0.02 1.59 16 34 H 0.07 2.08 8.00 -2.39 -0.02 2.06 16 35 H 0.02 0.74 8.08 -2.39 -0.02 0.72 16 36 H 0.12 2.67 7.40 -2.39 -0.02 2.65 16 37 H 0.11 2.36 6.48 -2.39 -0.02 2.34 16 38 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.06 1.98 8.07 -2.39 -0.02 1.96 16 40 H 0.10 2.02 6.44 -2.39 -0.02 2.01 16 41 H 0.02 1.26 8.07 -2.39 -0.02 1.24 16 42 H 0.00 -0.27 7.42 -2.38 -0.02 -0.29 16 43 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 44 H 0.09 1.74 8.09 -2.39 -0.02 1.72 16 45 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.08 1.33 6.07 -2.38 -0.01 1.32 16 47 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 48 H 0.06 1.01 7.83 -2.39 -0.02 1.00 16 49 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 50 H 0.10 1.14 8.14 -2.39 -0.02 1.13 16 51 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 52 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 53 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 Total: -1.00 -76.93 407.11 0.53 -76.39 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: 0.87 Total: 14.62 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: 6.40 Total: 11.03 kcal Atomic # 7 Polarization: -93.38 SS G_CDS: -5.87 Total: -99.25 kcal Atomic # 8 Polarization: -46.89 SS G_CDS: -2.89 Total: -49.78 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -76.93 0.53 -76.39 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366575180.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.169 kcal (2) G-P(sol) polarization free energy of solvation -76.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds