Wall clock time and date at job start Wed Apr 1 2020 00:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.55065 * 2 1 4 4 C 1.53104 * 109.50943 * 239.87954 * 2 1 3 5 5 N 1.47016 * 109.28449 * 183.18349 * 4 2 1 6 6 C 1.46897 * 111.00238 * 182.41187 * 5 4 2 7 7 C 1.52999 * 109.46963 * 46.36655 * 6 5 4 8 8 C 1.50698 * 109.46923 * 180.02562 * 7 6 5 9 9 O 1.21279 * 120.00257 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99791 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00275 * 359.97438 * 10 8 7 12 12 C 1.46500 * 119.99689 * 179.97438 * 10 8 7 13 13 C 1.50703 * 109.47126 * 90.00409 * 12 10 8 14 14 H 1.08002 * 119.99685 * 359.97438 * 13 12 10 15 15 C 1.37877 * 120.00216 * 180.02562 * 13 12 10 16 16 N 1.31516 * 120.00069 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99806 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.46845 * 90.00621 * 17 15 13 19 19 H 1.48503 * 109.47399 * 210.00111 * 17 15 13 20 20 H 1.48498 * 109.47295 * 330.00717 * 17 15 13 21 21 C 1.47037 * 110.74853 * 58.63584 * 5 4 2 22 22 C 1.53007 * 109.25425 * 301.50797 * 21 5 4 23 23 C 1.53098 * 109.54200 * 176.74944 * 22 21 5 24 24 C 1.53199 * 109.01985 * 176.96139 * 23 22 21 25 25 C 1.53089 * 109.14786 * 303.10609 * 24 23 22 26 26 O 1.42896 * 109.45994 * 57.61232 * 25 24 23 27 27 C 1.42917 * 114.08960 * 298.84325 * 26 25 24 28 28 O 1.42930 * 109.42210 * 56.71729 * 22 21 5 29 29 H 1.09000 * 109.47157 * 299.88347 * 1 2 3 30 30 H 1.08997 * 109.47358 * 59.88326 * 1 2 3 31 31 H 1.09004 * 109.47511 * 179.88424 * 1 2 3 32 32 H 1.08992 * 109.50704 * 63.23591 * 4 2 1 33 33 H 1.09005 * 109.50247 * 303.12085 * 4 2 1 34 34 H 1.09001 * 109.46556 * 286.36698 * 6 5 4 35 35 H 1.08998 * 109.47166 * 166.36938 * 6 5 4 36 36 H 1.08997 * 109.47408 * 60.00079 * 7 6 5 37 37 H 1.09007 * 109.47139 * 300.00221 * 7 6 5 38 38 H 1.08998 * 109.47432 * 270.00142 * 11 10 8 39 39 H 1.09003 * 109.47020 * 30.00210 * 11 10 8 40 40 H 1.09003 * 109.46942 * 149.99837 * 11 10 8 41 41 H 1.08999 * 109.47567 * 330.00236 * 12 10 8 42 42 H 1.09001 * 109.47193 * 210.00161 * 12 10 8 43 43 H 0.97000 * 119.99667 * 179.97438 * 16 15 13 44 44 H 1.08994 * 109.50824 * 61.44237 * 21 5 4 45 45 H 1.08995 * 109.50446 * 181.53411 * 21 5 4 46 46 H 1.09004 * 109.54037 * 296.82108 * 23 22 21 47 47 H 1.08997 * 109.54884 * 57.00027 * 23 22 21 48 48 H 1.08995 * 109.52391 * 63.00834 * 24 23 22 49 49 H 1.08994 * 109.51981 * 183.20602 * 24 23 22 50 50 H 1.08998 * 109.47325 * 177.61095 * 25 24 23 51 51 H 1.09003 * 109.47249 * 297.61475 * 25 24 23 52 52 H 1.09005 * 109.47931 * 301.08387 * 27 26 25 53 53 H 1.09003 * 109.48425 * 181.03966 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8947 1.0271 0.0000 4 6 2.0413 -0.7242 -1.2483 5 7 3.5094 -0.7883 -1.2052 6 6 4.0442 -1.4266 -2.4154 7 6 3.3587 -0.8358 -3.6490 8 6 3.9069 -1.4911 -4.8904 9 8 4.7621 -2.3461 -4.7976 10 7 3.4468 -1.1270 -6.1038 11 6 2.4134 -0.0946 -6.2159 12 6 3.9802 -1.7636 -7.3106 13 6 3.1561 -2.9809 -7.6425 14 1 2.3190 -3.2533 -7.0167 15 6 3.4713 -3.7475 -8.7443 16 7 2.7524 -4.8101 -9.0336 17 14 4.9195 -3.2767 -9.8262 18 1 6.1494 -3.9396 -9.3229 19 1 4.6577 -3.7129 -11.2213 20 1 5.1029 -1.8034 -9.7943 21 6 3.9650 -1.4882 0.0050 22 6 3.4327 -0.7589 1.2402 23 6 3.8350 -1.5274 2.5017 24 6 3.3624 -0.7481 3.7331 25 6 3.9580 0.6616 3.6943 26 8 3.5694 1.3094 2.4813 27 6 4.0241 0.6512 1.2970 28 8 2.0077 -0.6765 1.1662 29 1 -0.3633 0.5120 0.8910 30 1 -0.3634 0.5156 -0.8889 31 1 -0.3634 -1.0277 -0.0021 32 1 1.7267 -0.1804 -2.1390 33 1 1.6336 -1.7348 -1.2753 34 1 3.8558 -2.4994 -2.3737 35 1 5.1178 -1.2484 -2.4759 36 1 3.5470 0.2369 -3.6906 37 1 2.2850 -1.0141 -3.5884 38 1 1.4288 -0.5611 -6.1843 39 1 2.5096 0.6072 -5.3874 40 1 2.5330 0.4382 -7.1592 41 1 5.0144 -2.0612 -7.1377 42 1 3.9388 -1.0593 -8.1415 43 1 2.9740 -5.3491 -9.8090 44 1 3.5897 -2.5115 -0.0034 45 1 5.0546 -1.5002 0.0300 46 1 3.3689 -2.5127 2.4926 47 1 4.9190 -1.6372 2.5317 48 1 2.2743 -0.6842 3.7282 49 1 3.6942 -1.2591 4.6369 50 1 3.5913 1.2346 4.5459 51 1 5.0453 0.5981 3.7402 52 1 5.1123 0.5888 1.3108 53 1 3.7032 1.2156 0.4214 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000366575182.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:04 Heat of formation + Delta-G solvation = -140.991769 kcal Electronic energy + Delta-G solvation = -31401.560200 eV Core-core repulsion = 27272.484080 eV Total energy + Delta-G solvation = -4129.076121 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.77347 -40.74352 -39.11546 -37.13830 -36.57778 -35.03395 -34.72876 -33.06845 -32.63896 -30.94351 -29.95184 -27.84437 -27.41532 -26.48049 -26.18697 -24.53018 -23.39221 -22.76399 -21.52337 -20.57839 -19.92895 -19.17708 -18.17238 -17.77851 -17.32229 -17.12560 -17.04361 -16.81697 -16.37559 -16.22367 -15.97779 -15.75445 -15.60541 -15.09509 -14.78878 -14.61717 -14.46126 -14.13188 -13.89860 -13.70268 -13.65110 -13.60442 -13.49050 -13.46054 -13.27042 -13.03980 -12.89375 -12.77092 -12.61844 -12.50479 -12.34033 -12.12069 -12.02225 -11.99256 -11.85518 -11.77033 -11.45920 -11.23798 -10.85268 -10.74058 -10.68307 -10.13244 -9.47878 -9.41414 -8.36113 -6.41373 1.31490 1.35689 1.44262 1.76949 2.21826 2.29470 2.60663 2.76175 2.98380 3.01232 3.60953 3.65406 3.70549 3.77369 3.88219 3.91890 4.02480 4.07678 4.11857 4.21075 4.31427 4.35461 4.38217 4.43958 4.52589 4.56665 4.59499 4.64369 4.66972 4.69932 4.73718 4.76239 4.82706 4.87617 4.89270 4.92175 4.95168 4.98330 5.00199 5.02359 5.09138 5.17957 5.29860 5.35888 5.43907 5.60342 5.80055 5.84118 6.17226 6.21245 6.39307 6.59592 6.67848 7.19215 7.39575 8.80971 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.023354 B = 0.002238 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.673136 B =12506.432414 C =12798.096706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.088 3.912 3 H 0.072 0.928 4 C 0.012 3.988 5 N -0.527 5.527 6 C 0.080 3.920 7 C -0.124 4.124 8 C 0.497 3.503 9 O -0.598 6.598 10 N -0.608 5.608 11 C 0.078 3.922 12 C 0.222 3.778 13 C -0.536 4.536 14 H 0.025 0.975 15 C 0.008 3.992 16 N -0.946 5.946 17 Si 0.951 3.049 18 H -0.277 1.277 19 H -0.275 1.275 20 H -0.236 1.236 21 C 0.029 3.971 22 C 0.093 3.907 23 C -0.111 4.111 24 C -0.145 4.145 25 C 0.053 3.947 26 O -0.396 6.396 27 C 0.050 3.950 28 O -0.379 6.379 29 H 0.066 0.934 30 H 0.092 0.908 31 H 0.053 0.947 32 H 0.109 0.891 33 H 0.028 0.972 34 H 0.017 0.983 35 H 0.080 0.920 36 H 0.132 0.868 37 H 0.106 0.894 38 H 0.049 0.951 39 H 0.106 0.894 40 H 0.079 0.921 41 H 0.018 0.982 42 H 0.052 0.948 43 H 0.268 0.732 44 H 0.033 0.967 45 H 0.097 0.903 46 H 0.069 0.931 47 H 0.095 0.905 48 H 0.061 0.939 49 H 0.093 0.907 50 H 0.104 0.896 51 H 0.062 0.938 52 H 0.068 0.932 53 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.042 16.546 24.840 29.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.031 3.969 3 H 0.090 0.910 4 C -0.116 4.116 5 N -0.251 5.251 6 C -0.048 4.048 7 C -0.163 4.163 8 C 0.286 3.714 9 O -0.479 6.479 10 N -0.339 5.339 11 C -0.064 4.064 12 C 0.099 3.901 13 C -0.575 4.575 14 H 0.044 0.956 15 C -0.190 4.190 16 N -0.587 5.587 17 Si 0.773 3.227 18 H -0.203 1.203 19 H -0.200 1.200 20 H -0.159 1.159 21 C -0.099 4.099 22 C 0.053 3.947 23 C -0.149 4.149 24 C -0.183 4.183 25 C -0.023 4.023 26 O -0.315 6.315 27 C -0.027 4.027 28 O -0.299 6.299 29 H 0.085 0.915 30 H 0.111 0.889 31 H 0.073 0.927 32 H 0.127 0.873 33 H 0.046 0.954 34 H 0.035 0.965 35 H 0.098 0.902 36 H 0.150 0.850 37 H 0.124 0.876 38 H 0.068 0.932 39 H 0.124 0.876 40 H 0.098 0.902 41 H 0.036 0.964 42 H 0.070 0.930 43 H 0.077 0.923 44 H 0.052 0.948 45 H 0.115 0.885 46 H 0.088 0.912 47 H 0.113 0.887 48 H 0.080 0.920 49 H 0.111 0.889 50 H 0.122 0.878 51 H 0.080 0.920 52 H 0.086 0.914 53 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.303 16.567 24.895 29.905 hybrid contribution 0.262 -1.970 -1.163 2.303 sum 0.565 14.597 23.731 27.867 Atomic orbital electron populations 1.21738 0.91638 1.02722 1.03666 1.22261 0.95662 0.95688 0.83320 0.90983 1.23096 0.87587 1.00134 1.00817 1.62389 1.09309 1.51900 1.01492 1.21691 0.99917 0.95251 0.87906 1.21735 1.01881 1.03043 0.89660 1.21306 0.81889 0.82360 0.85854 1.90638 1.35188 1.34783 1.87313 1.47975 1.40255 1.39499 1.06153 1.21988 0.89931 0.89874 1.04614 1.19367 0.94022 0.92574 0.84118 1.21562 1.14393 1.10724 1.10803 0.95626 1.25906 0.99645 0.94362 0.99087 1.70057 1.41958 1.17737 1.28908 0.85676 0.78558 0.80768 0.77702 1.20258 1.19987 1.15880 1.22761 1.01838 0.95580 0.89717 1.22127 0.81775 0.96095 0.94720 1.21635 1.02128 0.98834 0.92254 1.22072 1.01573 0.96384 0.98273 1.22777 0.99198 0.93332 0.87005 1.87931 1.78081 1.51034 1.14438 1.23035 0.98659 0.92683 0.88330 1.88003 1.20235 1.78209 1.43421 0.91485 0.88949 0.92741 0.87288 0.95351 0.96502 0.90186 0.84996 0.87553 0.93231 0.87607 0.90189 0.96370 0.92982 0.92269 0.94845 0.88504 0.91212 0.88658 0.92031 0.88861 0.87835 0.91976 0.91401 0.88051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.57 71.98 0.69 -1.47 16 2 C 0.09 1.65 3.03 30.63 0.09 1.74 16 3 H 0.07 1.33 6.45 -2.39 -0.02 1.31 16 4 C 0.01 0.23 4.22 86.32 0.36 0.59 16 5 N -0.53 -11.22 4.30 -895.35 -3.85 -15.07 16 6 C 0.08 2.14 4.57 86.30 0.39 2.54 16 7 C -0.12 -3.18 3.52 29.85 0.11 -3.07 16 8 C 0.50 19.51 7.67 87.66 0.67 20.19 16 9 O -0.60 -29.68 15.56 -3.03 -0.05 -29.73 16 10 N -0.61 -24.07 2.86 -851.12 -2.43 -26.50 16 11 C 0.08 2.09 10.29 127.77 1.31 3.40 16 12 C 0.22 10.76 4.27 85.63 0.37 11.12 16 13 C -0.54 -31.78 9.94 25.60 0.25 -31.53 16 14 H 0.03 1.70 8.06 -2.91 -0.02 1.68 16 15 C 0.01 0.46 5.47 84.65 0.46 0.93 16 16 N -0.95 -60.33 13.96 21.45 0.30 -60.03 16 17 Si 0.95 44.54 27.47 68.60 1.88 46.43 16 18 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 19 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 20 H -0.24 -9.82 6.54 99.48 0.65 -9.17 16 21 C 0.03 0.60 4.33 86.28 0.37 0.97 16 22 C 0.09 1.72 0.71 -10.75 -0.01 1.72 16 23 C -0.11 -1.67 5.04 30.69 0.15 -1.51 16 24 C -0.15 -1.95 5.98 30.69 0.18 -1.77 16 25 C 0.05 0.72 6.84 72.01 0.49 1.21 16 26 O -0.40 -7.75 10.70 -141.85 -1.52 -9.27 16 27 C 0.05 0.89 5.17 71.99 0.37 1.26 16 28 O -0.38 -8.30 9.34 -141.85 -1.32 -9.63 16 29 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.11 1.77 6.05 -2.39 -0.01 1.75 16 33 H 0.03 0.66 8.14 -2.38 -0.02 0.65 16 34 H 0.02 0.54 8.04 -2.39 -0.02 0.52 16 35 H 0.08 2.24 8.10 -2.39 -0.02 2.22 16 36 H 0.13 2.49 7.40 -2.39 -0.02 2.48 16 37 H 0.11 2.43 6.24 -2.38 -0.01 2.42 16 38 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.11 1.85 6.44 -2.39 -0.02 1.83 16 40 H 0.08 1.97 7.89 -2.39 -0.02 1.95 16 41 H 0.02 0.95 6.85 -2.39 -0.02 0.93 16 42 H 0.05 2.29 6.95 -2.39 -0.02 2.28 16 43 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 44 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 48 H 0.06 1.06 7.83 -2.39 -0.02 1.04 16 49 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 50 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 51 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 52 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 53 H 0.10 1.92 6.09 -2.39 -0.01 1.91 16 Total: -1.00 -80.12 402.09 0.11 -80.01 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: 0.82 Total: 17.48 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: 6.28 Total: 6.31 kcal Atomic # 7 Polarization: -95.62 SS G_CDS: -5.98 Total: -101.60 kcal Atomic # 8 Polarization: -45.74 SS G_CDS: -2.89 Total: -48.63 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.88 Total: 46.43 kcal Total: -80.12 0.11 -80.01 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366575182.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.985 kcal (2) G-P(sol) polarization free energy of solvation -80.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds