Wall clock time and date at job start Wed Apr 1 2020 00:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46945 * 2 1 4 4 C 1.50700 * 109.47019 * 119.99936 * 2 1 3 5 5 O 1.21279 * 120.00106 * 120.00449 * 4 2 1 6 6 N 1.34773 * 120.00103 * 299.99964 * 4 2 1 7 7 C 1.46500 * 119.99802 * 0.02562 * 6 4 2 8 8 C 1.46493 * 120.00043 * 180.02562 * 6 4 2 9 9 C 1.50705 * 109.47282 * 89.99923 * 8 6 4 10 10 H 1.07997 * 120.00177 * 0.02562 * 9 8 6 11 11 C 1.37878 * 120.00061 * 179.97438 * 9 8 6 12 12 N 1.31511 * 120.00105 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00017 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.47483 * 90.00070 * 13 11 9 15 15 H 1.48502 * 109.47477 * 210.00248 * 13 11 9 16 16 H 1.48504 * 109.47121 * 330.00483 * 13 11 9 17 17 N 1.46900 * 109.47420 * 240.00025 * 2 1 3 18 18 C 1.47009 * 110.99871 * 306.04824 * 17 2 1 19 19 C 1.53093 * 109.33273 * 182.40796 * 18 17 2 20 20 H 1.09000 * 109.50679 * 63.09200 * 19 18 17 21 21 C 1.52996 * 109.50896 * 183.18115 * 19 18 17 22 22 O 1.43034 * 109.24609 * 303.11447 * 19 18 17 23 23 C 1.42915 * 113.72312 * 58.54136 * 22 19 18 24 24 C 1.53072 * 109.55477 * 181.28300 * 23 22 19 25 25 C 1.53111 * 109.16403 * 296.89894 * 24 23 22 26 26 O 1.42901 * 109.41119 * 302.52582 * 25 24 23 27 27 C 1.42908 * 114.12905 * 61.17858 * 26 25 24 28 28 C 1.53090 * 109.51549 * 61.53004 * 23 22 19 29 29 C 1.47111 * 111.04596 * 69.65426 * 17 2 1 30 30 H 1.09000 * 109.46969 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46912 * 300.00379 * 1 2 3 32 32 H 1.09004 * 109.46709 * 59.99808 * 1 2 3 33 33 H 1.08996 * 109.47129 * 90.00560 * 7 6 4 34 34 H 1.09000 * 109.46914 * 209.99998 * 7 6 4 35 35 H 1.08996 * 109.47374 * 329.99591 * 7 6 4 36 36 H 1.09001 * 109.47408 * 210.00163 * 8 6 4 37 37 H 1.09005 * 109.47524 * 330.00320 * 8 6 4 38 38 H 0.97001 * 119.99953 * 179.97438 * 12 11 9 39 39 H 1.09002 * 109.50140 * 62.44089 * 18 17 2 40 40 H 1.09000 * 109.49532 * 302.37325 * 18 17 2 41 41 H 1.08996 * 109.47155 * 60.00488 * 21 19 18 42 42 H 1.09002 * 109.47252 * 179.97438 * 21 19 18 43 43 H 1.09002 * 109.46926 * 300.00036 * 21 19 18 44 44 H 1.08998 * 109.51927 * 56.80571 * 24 23 22 45 45 H 1.09002 * 109.52440 * 176.98929 * 24 23 22 46 46 H 1.09002 * 109.47897 * 182.54519 * 25 24 23 47 47 H 1.08997 * 109.48086 * 62.50376 * 25 24 23 48 48 H 1.09009 * 109.48203 * 178.83184 * 27 26 25 49 49 H 1.08989 * 109.50032 * 58.79125 * 27 26 25 50 50 H 1.09003 * 109.52308 * 183.00261 * 28 23 22 51 51 H 1.08994 * 109.52897 * 303.19824 * 28 23 22 52 52 H 1.08994 * 109.50291 * 57.83212 * 29 17 2 53 53 H 1.08999 * 109.53654 * 297.72642 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6964 1.1192 6 7 1.7067 -0.2499 2.4545 7 6 0.8640 0.9409 2.5889 8 6 2.1955 -0.9402 3.6507 9 6 3.5229 -0.3561 4.0606 10 1 3.9587 0.4490 3.4877 11 6 4.1806 -0.8490 5.1677 12 7 3.6497 -1.8291 5.8656 13 14 5.8255 -0.1246 5.6762 14 1 5.6008 1.0006 6.6189 15 1 6.6432 -1.1711 6.3405 16 1 6.5404 0.3728 4.4733 17 7 2.0197 -0.6925 -1.1994 18 6 1.4339 -2.0364 -1.3079 19 6 2.0144 -2.7448 -2.5347 20 1 3.0888 -2.8755 -2.4051 21 6 1.3493 -4.1131 -2.6969 22 8 1.7657 -1.9517 -3.6987 23 6 2.3204 -0.6365 -3.6277 24 6 1.9720 0.1360 -4.9024 25 6 2.6184 -0.5589 -6.1038 26 8 4.0311 -0.6382 -5.9032 27 6 4.4162 -1.3919 -4.7517 28 6 3.8428 -0.7301 -3.4957 29 6 1.7458 0.0938 -2.4122 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.1838 0.6426 2.6225 34 1 1.1218 1.4665 3.5084 35 1 1.0272 1.5996 1.7360 36 1 1.4776 -0.8151 4.4613 37 1 2.3171 -2.0015 3.4336 38 1 4.1126 -2.1760 6.6443 39 1 0.3521 -1.9544 -1.4131 40 1 1.6699 -2.6096 -0.4113 41 1 0.2753 -3.9817 -2.8281 42 1 1.7627 -4.6167 -3.5708 43 1 1.5358 -4.7154 -1.8078 44 1 0.8899 0.1560 -5.0318 45 1 2.3493 1.1557 -4.8249 46 1 2.4113 0.0122 -7.0088 47 1 2.2089 -1.5638 -6.2061 48 1 5.5038 -1.4208 -4.6832 49 1 4.0302 -2.4076 -4.8359 50 1 4.2612 0.2706 -3.3879 51 1 4.0966 -1.3282 -2.6206 52 1 2.2123 1.0748 -2.3230 53 1 0.6692 0.2124 -2.5343 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000369282874.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:24:39 Heat of formation + Delta-G solvation = -129.198023 kcal Electronic energy + Delta-G solvation = -32613.212470 eV Core-core repulsion = 28484.647764 eV Total energy + Delta-G solvation = -4128.564705 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.00128 -40.77106 -39.03357 -37.10111 -36.56773 -34.90662 -34.78511 -32.53960 -32.05150 -31.26018 -29.42711 -28.26403 -27.67138 -26.60186 -25.51875 -24.77212 -24.03841 -23.04032 -21.81465 -20.30252 -19.90564 -18.71328 -18.02534 -17.66168 -17.41955 -17.04002 -16.90025 -16.50498 -16.39421 -16.18901 -15.86494 -15.70254 -15.61137 -15.34308 -14.63844 -14.58543 -14.38796 -14.16542 -13.85079 -13.73535 -13.54966 -13.44009 -13.31996 -13.28994 -13.16269 -13.00996 -12.86735 -12.68607 -12.59773 -12.53370 -12.36070 -12.28132 -12.24195 -12.16551 -11.86567 -11.69194 -11.34187 -11.21672 -10.73071 -10.65076 -10.50858 -10.18052 -9.42865 -9.21804 -8.23274 -6.37975 1.35085 1.38240 1.48466 1.86334 2.19385 2.38958 2.59557 2.85368 2.98264 3.06172 3.55879 3.68036 3.73321 3.80547 3.88550 4.03986 4.05342 4.07086 4.12523 4.26421 4.29276 4.35939 4.38215 4.43790 4.52266 4.58997 4.60984 4.63593 4.72111 4.73866 4.76584 4.79643 4.82097 4.88185 4.91274 4.93969 4.97419 5.00823 5.09356 5.14902 5.18303 5.22090 5.24214 5.29030 5.55896 5.81396 5.88808 6.00326 6.05922 6.24118 6.26916 6.70187 6.81468 7.28472 7.52781 8.83517 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015261 B = 0.003013 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.326027 B = 9289.572565 C = 9747.089860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.077 3.923 3 H 0.121 0.879 4 C 0.501 3.499 5 O -0.577 6.577 6 N -0.610 5.610 7 C 0.076 3.924 8 C 0.263 3.737 9 C -0.541 4.541 10 H 0.051 0.949 11 C 0.008 3.992 12 N -0.929 5.929 13 Si 0.966 3.034 14 H -0.262 1.262 15 H -0.281 1.281 16 H -0.274 1.274 17 N -0.528 5.528 18 C 0.027 3.973 19 C 0.094 3.906 20 H 0.051 0.949 21 C -0.137 4.137 22 O -0.374 6.374 23 C 0.120 3.880 24 C -0.132 4.132 25 C 0.061 3.939 26 O -0.399 6.399 27 C 0.068 3.932 28 C -0.168 4.168 29 C 0.034 3.966 30 H 0.049 0.951 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.093 0.907 36 H 0.023 0.977 37 H -0.004 1.004 38 H 0.267 0.733 39 H 0.048 0.952 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.094 0.906 45 H 0.098 0.902 46 H 0.114 0.886 47 H 0.050 0.950 48 H 0.097 0.903 49 H 0.047 0.953 50 H 0.080 0.920 51 H 0.067 0.933 52 H 0.096 0.904 53 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.031 6.362 -22.481 25.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.035 4.035 3 H 0.139 0.861 4 C 0.289 3.711 5 O -0.457 6.457 6 N -0.342 5.342 7 C -0.066 4.066 8 C 0.141 3.859 9 C -0.580 4.580 10 H 0.070 0.930 11 C -0.191 4.191 12 N -0.568 5.568 13 Si 0.791 3.209 14 H -0.187 1.187 15 H -0.207 1.207 16 H -0.199 1.199 17 N -0.252 5.252 18 C -0.101 4.101 19 C 0.036 3.964 20 H 0.069 0.931 21 C -0.195 4.195 22 O -0.294 6.294 23 C 0.080 3.920 24 C -0.170 4.170 25 C -0.015 4.015 26 O -0.318 6.318 27 C -0.009 4.009 28 C -0.206 4.206 29 C -0.094 4.094 30 H 0.069 0.931 31 H 0.112 0.888 32 H 0.108 0.892 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.111 0.889 36 H 0.041 0.959 37 H 0.014 0.986 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.092 0.908 43 H 0.089 0.911 44 H 0.113 0.887 45 H 0.116 0.884 46 H 0.132 0.868 47 H 0.069 0.931 48 H 0.115 0.885 49 H 0.065 0.935 50 H 0.098 0.902 51 H 0.086 0.914 52 H 0.115 0.885 53 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.116 5.715 -22.597 24.681 hybrid contribution 0.174 -0.155 1.499 1.517 sum -7.942 5.559 -21.098 23.218 Atomic orbital electron populations 1.22592 0.93224 1.03070 1.05446 1.21571 0.95755 0.98453 0.87712 0.86120 1.21085 0.80093 0.84732 0.85144 1.90598 1.39455 1.28915 1.86708 1.48120 1.50414 1.29607 1.06043 1.22089 0.94166 0.86617 1.03702 1.18697 0.93583 0.91635 0.81936 1.21700 1.05972 1.19006 1.11299 0.93031 1.25842 1.01747 0.95249 0.96276 1.70047 1.40732 1.27231 1.18838 0.85434 0.78813 0.78360 0.78316 1.18706 1.20659 1.19918 1.61988 1.59122 1.02613 1.01495 1.22827 0.97038 0.90643 0.99596 1.22064 0.98837 0.91581 0.83934 0.93127 1.21698 1.01412 0.93453 1.02927 1.87940 1.77280 1.24861 1.39292 1.21547 0.92076 0.83252 0.95116 1.22161 1.02984 0.99505 0.92371 1.22653 0.80190 1.00540 0.98122 1.87879 1.23854 1.74209 1.45855 1.22494 1.00140 0.93975 0.84288 1.22580 0.96216 1.02931 0.98882 1.22850 1.00280 0.97652 0.88581 0.93144 0.88842 0.89196 0.90771 0.91631 0.88898 0.95942 0.98578 0.92421 0.93385 0.91243 0.91289 0.90803 0.91076 0.88706 0.88400 0.86803 0.93120 0.88489 0.93452 0.90184 0.91441 0.88525 0.92294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.88 8.07 71.98 0.58 -3.30 16 2 C 0.08 2.16 1.93 44.17 0.09 2.24 16 3 H 0.12 2.94 7.31 -2.38 -0.02 2.92 16 4 C 0.50 20.68 6.78 87.66 0.59 21.28 16 5 O -0.58 -29.79 13.90 -3.03 -0.04 -29.83 16 6 N -0.61 -25.51 2.86 -851.15 -2.43 -27.95 16 7 C 0.08 2.18 8.80 127.77 1.12 3.31 16 8 C 0.26 14.22 5.16 85.64 0.44 14.66 16 9 C -0.54 -31.42 9.39 25.60 0.24 -31.18 16 10 H 0.05 2.98 7.81 -2.91 -0.02 2.95 16 11 C 0.01 0.45 5.46 84.66 0.46 0.91 16 12 N -0.93 -56.51 13.29 21.45 0.28 -56.22 16 13 Si 0.97 45.30 29.54 68.60 2.03 47.33 16 14 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 15 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 16 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 17 N -0.53 -14.88 3.86 -874.34 -3.37 -18.25 16 18 C 0.03 0.79 3.93 86.31 0.34 1.13 16 19 C 0.09 2.44 3.03 30.62 0.09 2.53 16 20 H 0.05 1.51 6.44 -2.39 -0.02 1.49 16 21 C -0.14 -2.97 9.57 71.98 0.69 -2.28 16 22 O -0.37 -8.78 8.90 -148.98 -1.33 -10.11 16 23 C 0.12 2.47 0.69 -10.74 -0.01 2.46 16 24 C -0.13 -2.01 5.15 30.66 0.16 -1.85 16 25 C 0.06 1.01 6.70 72.02 0.48 1.49 16 26 O -0.40 -8.66 10.76 -148.98 -1.60 -10.26 16 27 C 0.07 1.47 6.70 72.02 0.48 1.95 16 28 C -0.17 -3.89 4.51 30.66 0.14 -3.75 16 29 C 0.03 0.70 4.09 86.26 0.35 1.05 16 30 H 0.05 1.21 6.38 -2.39 -0.02 1.20 16 31 H 0.09 1.74 4.53 -2.39 -0.01 1.73 16 32 H 0.09 1.41 6.73 -2.38 -0.02 1.39 16 33 H 0.07 1.73 6.95 -2.39 -0.02 1.71 16 34 H 0.06 1.99 8.07 -2.39 -0.02 1.98 16 35 H 0.09 1.99 6.01 -2.39 -0.01 1.98 16 36 H 0.02 1.23 8.07 -2.39 -0.02 1.21 16 37 H 0.00 -0.24 7.42 -2.38 -0.02 -0.26 16 38 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 39 H 0.05 1.28 6.37 -2.39 -0.02 1.26 16 40 H 0.07 2.60 5.85 -2.39 -0.01 2.59 16 41 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.07 1.57 8.14 -2.39 -0.02 1.56 16 44 H 0.09 1.18 8.14 -2.39 -0.02 1.17 16 45 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 46 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 47 H 0.05 0.91 7.83 -2.39 -0.02 0.89 16 48 H 0.10 1.94 8.14 -2.38 -0.02 1.92 16 49 H 0.05 1.07 7.82 -2.39 -0.02 1.05 16 50 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 51 H 0.07 1.93 6.08 -2.39 -0.01 1.92 16 52 H 0.10 1.74 8.10 -2.39 -0.02 1.72 16 53 H 0.06 1.06 6.71 -2.39 -0.02 1.04 16 Total: -1.00 -75.44 392.31 0.68 -74.75 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: 0.89 Total: 19.89 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: 6.26 Total: 10.65 kcal Atomic # 7 Polarization: -96.90 SS G_CDS: -5.52 Total: -102.42 kcal Atomic # 8 Polarization: -47.23 SS G_CDS: -2.97 Total: -50.20 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -75.44 0.68 -74.75 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000369282874.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.446 kcal (2) G-P(sol) polarization free energy of solvation -75.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds