Wall clock time and date at job start Wed Apr 1 2020 00:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47198 * 2 1 4 4 C 1.50697 * 109.46969 * 239.99974 * 2 1 3 5 5 O 1.21290 * 119.99894 * 239.99386 * 4 2 1 6 6 N 1.34772 * 120.00198 * 60.00150 * 4 2 1 7 7 C 1.46499 * 119.99867 * 359.97438 * 6 4 2 8 8 C 1.46506 * 120.00199 * 179.97438 * 6 4 2 9 9 C 1.50696 * 109.46871 * 89.99405 * 8 6 4 10 10 H 1.07999 * 120.00319 * 0.02562 * 9 8 6 11 11 C 1.37885 * 119.99717 * 180.02562 * 9 8 6 12 12 N 1.31516 * 119.99913 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 119.99766 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47353 * 269.99586 * 13 11 9 15 15 H 1.48501 * 109.47293 * 30.00037 * 13 11 9 16 16 H 1.48504 * 109.46680 * 149.99835 * 13 11 9 17 17 N 1.46899 * 109.47448 * 119.99797 * 2 1 3 18 18 C 1.47014 * 110.99950 * 58.62226 * 17 2 1 19 19 C 1.53100 * 109.29657 * 177.59590 * 18 17 2 20 20 H 1.09000 * 109.54499 * 296.93791 * 19 18 17 21 21 C 1.53001 * 109.51308 * 176.81879 * 19 18 17 22 22 O 1.43035 * 109.23977 * 56.88580 * 19 18 17 23 23 C 1.42917 * 113.72447 * 301.45054 * 22 19 18 24 24 C 1.53073 * 109.54578 * 178.71401 * 23 22 19 25 25 C 1.53112 * 109.15585 * 63.06238 * 24 23 22 26 26 O 1.42892 * 109.41149 * 57.47660 * 25 24 23 27 27 C 1.42908 * 114.14036 * 298.83387 * 26 25 24 28 28 C 1.53092 * 109.50848 * 298.44927 * 23 22 19 29 29 C 1.47037 * 110.99803 * 295.00257 * 17 2 1 30 30 H 1.08998 * 109.47184 * 299.99970 * 1 2 3 31 31 H 1.08999 * 109.47339 * 59.99907 * 1 2 3 32 32 H 1.08994 * 109.47034 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47028 * 270.00104 * 7 6 4 34 34 H 1.08994 * 109.47418 * 30.00487 * 7 6 4 35 35 H 1.09004 * 109.47077 * 150.00105 * 7 6 4 36 36 H 1.09005 * 109.46943 * 329.99725 * 8 6 4 37 37 H 1.09002 * 109.47064 * 209.99988 * 8 6 4 38 38 H 0.97001 * 119.99646 * 179.97438 * 12 11 9 39 39 H 1.09006 * 109.50025 * 297.54133 * 18 17 2 40 40 H 1.09001 * 109.50264 * 57.64422 * 18 17 2 41 41 H 1.09003 * 109.46891 * 300.23971 * 21 19 18 42 42 H 1.09004 * 109.46784 * 60.23826 * 21 19 18 43 43 H 1.08994 * 109.47203 * 180.23530 * 21 19 18 44 44 H 1.08994 * 109.52208 * 182.96842 * 24 23 22 45 45 H 1.09003 * 109.51788 * 303.15833 * 24 23 22 46 46 H 1.08997 * 109.48259 * 297.49082 * 25 24 23 47 47 H 1.09003 * 109.47577 * 177.46090 * 25 24 23 48 48 H 1.09006 * 109.48182 * 301.20917 * 27 26 25 49 49 H 1.08999 * 109.49955 * 181.16855 * 27 26 25 50 50 H 1.09002 * 109.52499 * 56.83754 * 28 23 22 51 51 H 1.09003 * 109.52609 * 176.97087 * 28 23 22 52 52 H 1.08999 * 109.51202 * 302.17663 * 29 17 2 53 53 H 1.09000 * 109.51266 * 62.31490 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.7297 -1.6965 -1.1192 6 7 1.7067 -0.2500 -2.4545 7 6 0.8641 0.9408 -2.5889 8 6 2.1955 -0.9403 -3.6508 9 6 1.2034 -1.9978 -4.0610 10 1 0.2990 -2.1411 -3.4883 11 6 1.4503 -2.7825 -5.1676 12 7 0.5842 -3.7050 -5.5260 13 14 3.0148 -2.5351 -6.1577 14 1 2.7700 -1.5363 -7.2290 15 1 4.0948 -2.0467 -5.2630 16 1 3.4235 -3.8257 -6.7681 17 7 2.0197 -0.6924 1.1994 18 6 1.5216 -2.0747 1.2501 19 6 2.1023 -2.7770 2.4803 20 1 3.1872 -2.8322 2.3905 21 6 1.5253 -4.1904 2.5819 22 8 1.7574 -2.0348 3.6534 23 6 2.2247 -0.6842 3.6374 24 6 1.7774 0.0276 4.9166 25 6 2.4229 -0.6570 6.1245 26 8 3.8441 -0.6375 5.9781 27 6 4.3223 -1.3311 4.8237 28 6 3.7538 -0.6732 3.5635 29 6 1.6484 0.0399 2.4192 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.1838 0.6425 -2.6225 34 1 1.0272 1.5996 -1.7361 35 1 1.1218 1.4664 -3.5085 36 1 3.1559 -1.4079 -3.4335 37 1 2.3165 -0.2214 -4.4612 38 1 0.7577 -4.2568 -6.3047 39 1 0.4335 -2.0672 1.3151 40 1 1.8291 -2.6055 0.3491 41 1 0.4403 -4.1344 2.6699 42 1 1.7887 -4.7554 1.6876 43 1 1.9360 -4.6882 3.4602 44 1 2.0885 1.0716 4.8803 45 1 0.6922 -0.0273 5.0035 46 1 2.0777 -1.6892 6.1848 47 1 2.1439 -0.1266 7.0350 48 1 4.0019 -2.3722 4.8664 49 1 5.4111 -1.2866 4.7975 50 1 4.0800 -1.2283 2.6840 51 1 4.1079 0.3556 3.4971 52 1 2.0511 1.0518 2.3731 53 1 0.5624 0.0831 2.5015 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000369282875.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:24:43 Heat of formation + Delta-G solvation = -124.719150 kcal Electronic energy + Delta-G solvation = -32732.638365 eV Core-core repulsion = 28604.267879 eV Total energy + Delta-G solvation = -4128.370487 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.03047 -40.82468 -39.03122 -37.12861 -36.63636 -34.89630 -34.75464 -32.62954 -32.04825 -31.37910 -29.90006 -28.30694 -27.73442 -26.55745 -25.31656 -24.76348 -23.94628 -22.98663 -21.79816 -20.30158 -19.93566 -19.15996 -18.10738 -17.66073 -17.43979 -17.04728 -16.90002 -16.47357 -16.34761 -16.08837 -16.00091 -15.69815 -15.59394 -15.43521 -14.73800 -14.67364 -14.44334 -14.24309 -13.89085 -13.74356 -13.66459 -13.52694 -13.39650 -13.32269 -13.18129 -13.05100 -13.02691 -12.64695 -12.60210 -12.54494 -12.29383 -12.23011 -12.16298 -12.01483 -11.87216 -11.76713 -11.33500 -11.21712 -10.83047 -10.72702 -10.51972 -10.17304 -9.42997 -9.26777 -8.35222 -6.39970 1.30704 1.35485 1.46115 1.77806 2.17099 2.30142 2.59384 2.82001 2.98990 2.99264 3.52947 3.67532 3.74081 3.80459 3.87921 4.01882 4.04816 4.05430 4.11433 4.24892 4.31023 4.35532 4.37094 4.43659 4.51550 4.56497 4.59361 4.63260 4.68812 4.72604 4.74163 4.78078 4.80325 4.82945 4.87883 4.92824 4.94612 4.96036 4.98578 5.09860 5.12861 5.18034 5.24282 5.28766 5.45005 5.61946 5.81187 5.97679 6.23140 6.24707 6.27712 6.60973 6.70779 7.21084 7.44335 8.81781 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.019049 B = 0.002987 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.566883 B = 9370.638679 C = 9744.323364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.077 3.923 3 H 0.136 0.864 4 C 0.503 3.497 5 O -0.573 6.573 6 N -0.606 5.606 7 C 0.075 3.925 8 C 0.225 3.775 9 C -0.533 4.533 10 H 0.026 0.974 11 C 0.011 3.989 12 N -0.946 5.946 13 Si 0.948 3.052 14 H -0.251 1.251 15 H -0.256 1.256 16 H -0.283 1.283 17 N -0.519 5.519 18 C 0.020 3.980 19 C 0.098 3.902 20 H 0.058 0.942 21 C -0.140 4.140 22 O -0.377 6.377 23 C 0.117 3.883 24 C -0.133 4.133 25 C 0.062 3.938 26 O -0.398 6.398 27 C 0.066 3.934 28 C -0.166 4.166 29 C 0.032 3.968 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.035 0.965 33 H 0.053 0.947 34 H 0.102 0.898 35 H 0.080 0.920 36 H 0.019 0.981 37 H 0.049 0.951 38 H 0.268 0.732 39 H 0.034 0.966 40 H 0.076 0.924 41 H 0.061 0.939 42 H 0.067 0.933 43 H 0.077 0.923 44 H 0.102 0.898 45 H 0.090 0.910 46 H 0.047 0.953 47 H 0.114 0.886 48 H 0.044 0.956 49 H 0.100 0.900 50 H 0.070 0.930 51 H 0.086 0.914 52 H 0.106 0.894 53 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.933 13.090 21.284 25.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.035 4.035 3 H 0.154 0.846 4 C 0.291 3.709 5 O -0.453 6.453 6 N -0.338 5.338 7 C -0.066 4.066 8 C 0.103 3.897 9 C -0.572 4.572 10 H 0.045 0.955 11 C -0.187 4.187 12 N -0.586 5.586 13 Si 0.771 3.229 14 H -0.175 1.175 15 H -0.180 1.180 16 H -0.209 1.209 17 N -0.243 5.243 18 C -0.108 4.108 19 C 0.040 3.960 20 H 0.076 0.924 21 C -0.197 4.197 22 O -0.297 6.297 23 C 0.078 3.922 24 C -0.170 4.170 25 C -0.015 4.015 26 O -0.317 6.317 27 C -0.010 4.010 28 C -0.204 4.204 29 C -0.096 4.096 30 H 0.111 0.889 31 H 0.109 0.891 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.121 0.879 35 H 0.099 0.901 36 H 0.037 0.963 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.052 0.948 40 H 0.094 0.906 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.096 0.904 44 H 0.120 0.880 45 H 0.108 0.892 46 H 0.066 0.934 47 H 0.132 0.868 48 H 0.062 0.938 49 H 0.119 0.881 50 H 0.089 0.911 51 H 0.104 0.896 52 H 0.124 0.876 53 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.788 12.463 21.449 24.964 hybrid contribution -0.686 -0.859 -1.576 1.921 sum 2.102 11.604 19.874 23.109 Atomic orbital electron populations 1.22595 0.94238 1.02384 1.05378 1.21618 0.95003 0.99166 0.87678 0.84618 1.21070 0.80166 0.84467 0.85203 1.90574 1.40108 1.28004 1.86568 1.47895 1.50741 1.29442 1.05685 1.22130 0.94197 0.85983 1.04327 1.19331 0.94220 0.92198 0.83995 1.21532 1.05872 1.18266 1.11498 0.95529 1.25851 1.00242 0.94159 0.98464 1.70054 1.38170 1.22883 1.27511 0.85709 0.79521 0.78491 0.79220 1.17495 1.18000 1.20903 1.62098 1.59169 1.01746 1.01292 1.22922 0.97103 0.90532 1.00256 1.22012 0.98545 0.91852 0.83542 0.92394 1.21708 1.01686 0.93432 1.02914 1.87947 1.78284 1.23547 1.39922 1.21599 0.93224 0.82340 0.95085 1.22162 1.02356 1.00268 0.92256 1.22629 0.80046 1.00424 0.98368 1.87873 1.22526 1.76238 1.45060 1.22520 0.99440 0.94783 0.84303 1.22573 0.95709 1.03220 0.98881 1.22881 0.99505 0.98730 0.88455 0.88901 0.89097 0.94576 0.92844 0.87948 0.90119 0.96321 0.93321 0.92317 0.94832 0.90629 0.91941 0.91434 0.90443 0.88005 0.89171 0.93433 0.86846 0.93768 0.88145 0.91142 0.89561 0.87583 0.92916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.50 8.12 71.98 0.58 -3.91 16 2 C 0.08 2.09 1.97 44.17 0.09 2.18 16 3 H 0.14 2.79 7.38 -2.38 -0.02 2.77 16 4 C 0.50 19.89 6.78 87.66 0.59 20.48 16 5 O -0.57 -28.22 13.52 -3.06 -0.04 -28.26 16 6 N -0.61 -23.87 2.86 -851.12 -2.43 -26.31 16 7 C 0.08 2.03 8.84 127.77 1.13 3.16 16 8 C 0.23 10.85 4.27 85.63 0.37 11.21 16 9 C -0.53 -31.22 9.94 25.60 0.25 -30.97 16 10 H 0.03 1.74 8.06 -2.91 -0.02 1.72 16 11 C 0.01 0.63 5.47 84.66 0.46 1.10 16 12 N -0.95 -59.80 13.96 21.45 0.30 -59.50 16 13 Si 0.95 44.36 27.47 68.60 1.88 46.25 16 14 H -0.25 -10.71 7.11 99.48 0.71 -10.00 16 15 H -0.26 -11.58 6.54 99.48 0.65 -10.93 16 16 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 17 N -0.52 -14.33 3.94 -874.50 -3.45 -17.77 16 18 C 0.02 0.64 4.03 86.31 0.35 0.99 16 19 C 0.10 2.72 3.03 30.63 0.09 2.81 16 20 H 0.06 1.72 6.44 -2.39 -0.02 1.70 16 21 C -0.14 -3.50 9.57 71.98 0.69 -2.81 16 22 O -0.38 -9.27 8.89 -148.98 -1.32 -10.60 16 23 C 0.12 2.36 0.69 -10.74 -0.01 2.36 16 24 C -0.13 -1.98 5.15 30.66 0.16 -1.82 16 25 C 0.06 1.01 6.70 72.02 0.48 1.49 16 26 O -0.40 -8.23 10.76 -148.98 -1.60 -9.83 16 27 C 0.07 1.34 6.70 72.02 0.48 1.82 16 28 C -0.17 -3.48 4.51 30.66 0.14 -3.34 16 29 C 0.03 0.63 4.01 86.28 0.35 0.98 16 30 H 0.09 1.66 6.57 -2.39 -0.02 1.64 16 31 H 0.09 2.02 4.53 -2.39 -0.01 2.01 16 32 H 0.04 1.09 6.43 -2.39 -0.02 1.07 16 33 H 0.05 1.48 6.95 -2.39 -0.02 1.46 16 34 H 0.10 1.85 6.01 -2.39 -0.01 1.83 16 35 H 0.08 1.97 7.89 -2.39 -0.02 1.95 16 36 H 0.02 0.99 6.48 -2.38 -0.02 0.97 16 37 H 0.05 2.12 7.32 -2.39 -0.02 2.10 16 38 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 39 H 0.03 1.08 6.42 -2.38 -0.02 1.06 16 40 H 0.08 3.14 5.43 -2.39 -0.01 3.12 16 41 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 43 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 46 H 0.05 0.88 7.82 -2.39 -0.02 0.86 16 47 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 48 H 0.04 0.97 7.82 -2.38 -0.02 0.95 16 49 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 50 H 0.07 1.81 6.08 -2.39 -0.01 1.80 16 51 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 52 H 0.11 1.65 8.13 -2.39 -0.02 1.63 16 53 H 0.05 1.00 6.55 -2.39 -0.02 0.99 16 Total: -1.00 -77.50 387.72 0.39 -77.11 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: 0.84 Total: 23.19 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: 6.21 Total: 5.72 kcal Atomic # 7 Polarization: -98.00 SS G_CDS: -5.58 Total: -103.58 kcal Atomic # 8 Polarization: -45.72 SS G_CDS: -2.97 Total: -48.69 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.88 Total: 46.25 kcal Total: -77.50 0.39 -77.11 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000369282875.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.608 kcal (2) G-P(sol) polarization free energy of solvation -77.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds