Wall clock time and date at job start Wed Apr 1 2020 00:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46731 * 2 1 4 4 C 1.50698 * 109.47276 * 239.99751 * 2 1 3 5 5 O 1.21272 * 120.00390 * 269.90032 * 4 2 1 6 6 N 1.34782 * 119.99806 * 89.90110 * 4 2 1 7 7 C 1.46503 * 119.99891 * 354.87141 * 6 4 2 8 8 C 1.46502 * 119.99781 * 174.87312 * 6 4 2 9 9 C 1.50704 * 109.46946 * 89.99902 * 8 6 4 10 10 H 1.07995 * 119.99974 * 359.97438 * 9 8 6 11 11 C 1.37877 * 119.99863 * 179.97438 * 9 8 6 12 12 N 1.31518 * 119.99834 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99899 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47255 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47061 * 120.00298 * 13 11 9 16 16 H 1.48504 * 109.46665 * 239.99979 * 13 11 9 17 17 N 1.46897 * 109.47090 * 119.99774 * 2 1 3 18 18 C 1.47017 * 111.00000 * 176.28326 * 17 2 1 19 19 C 1.53106 * 109.27371 * 182.43448 * 18 17 2 20 20 H 1.09004 * 109.54523 * 63.03500 * 19 18 17 21 21 C 1.52997 * 109.50857 * 183.15154 * 19 18 17 22 22 O 1.43031 * 109.23794 * 303.08519 * 19 18 17 23 23 C 1.42914 * 113.75307 * 58.54495 * 22 19 18 24 24 C 1.53082 * 109.52744 * 61.65850 * 23 22 19 25 25 C 1.53108 * 109.15463 * 63.04709 * 24 23 22 26 26 O 1.42907 * 109.40341 * 57.48771 * 25 24 23 27 27 C 1.42908 * 114.14049 * 298.83551 * 26 25 24 28 28 C 1.53083 * 109.52281 * 181.38653 * 23 22 19 29 29 C 1.47036 * 111.00021 * 299.91383 * 17 2 1 30 30 H 1.09006 * 109.47020 * 176.71144 * 1 2 3 31 31 H 1.08993 * 109.47522 * 296.71331 * 1 2 3 32 32 H 1.09003 * 109.47281 * 56.71587 * 1 2 3 33 33 H 1.08995 * 109.46843 * 94.49734 * 7 6 4 34 34 H 1.09000 * 109.46770 * 214.49044 * 7 6 4 35 35 H 1.08993 * 109.47449 * 334.49548 * 7 6 4 36 36 H 1.08996 * 109.46761 * 209.99547 * 8 6 4 37 37 H 1.08994 * 109.47274 * 329.99730 * 8 6 4 38 38 H 0.96996 * 119.99810 * 180.02562 * 12 11 9 39 39 H 1.08998 * 109.49871 * 302.36893 * 18 17 2 40 40 H 1.08990 * 109.50338 * 62.49155 * 18 17 2 41 41 H 1.08999 * 109.46846 * 179.76113 * 21 19 18 42 42 H 1.09002 * 109.47258 * 299.76311 * 21 19 18 43 43 H 1.09001 * 109.46853 * 59.76187 * 21 19 18 44 44 H 1.09002 * 109.52506 * 182.95292 * 24 23 22 45 45 H 1.09002 * 109.52912 * 303.14623 * 24 23 22 46 46 H 1.09001 * 109.48210 * 297.51532 * 25 24 23 47 47 H 1.08999 * 109.48966 * 177.46879 * 25 24 23 48 48 H 1.09008 * 109.48267 * 301.19245 * 27 26 25 49 49 H 1.08997 * 109.49326 * 181.16381 * 27 26 25 50 50 H 1.09005 * 109.52432 * 56.85693 * 28 23 22 51 51 H 1.09000 * 109.52949 * 177.05666 * 28 23 22 52 52 H 1.09005 * 109.49937 * 297.70371 * 29 17 2 53 53 H 1.08995 * 109.50588 * 57.78034 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.2363 -1.9055 -1.1999 6 7 2.2551 -0.0176 -2.3649 7 6 1.9034 1.4027 -2.4367 8 6 2.8489 -0.6849 -3.5260 9 6 1.7550 -1.2586 -4.3895 10 1 0.7211 -1.1385 -4.1018 11 6 2.0744 -1.9367 -5.5467 12 7 3.3336 -2.0834 -5.8967 13 14 0.7185 -2.6471 -6.6173 14 1 -0.6019 -2.3482 -6.0072 15 1 0.7876 -2.0405 -7.9710 16 1 0.8921 -4.1181 -6.7246 17 7 2.0197 -0.6924 1.1994 18 6 3.4866 -0.7896 1.1898 19 6 3.9496 -1.5691 2.4235 20 1 3.5619 -2.5869 2.3785 21 6 5.4787 -1.6060 2.4604 22 8 3.4587 -0.9226 3.6011 23 6 2.0348 -0.8077 3.6436 24 6 1.4084 -2.2045 3.6383 25 6 1.8374 -2.9524 4.9035 26 8 1.4455 -2.2017 6.0546 27 6 2.0399 -0.9047 6.1368 28 6 1.6186 -0.0744 4.9213 29 6 1.5499 -0.0245 2.4222 30 1 -0.3633 -1.0260 -0.0590 31 1 -0.3634 0.4619 0.9179 32 1 -0.3634 0.5640 -0.8591 33 1 2.7782 2.0063 -2.1951 34 1 1.5638 1.6424 -3.4444 35 1 1.1066 1.6163 -1.7244 36 1 3.4269 0.0366 -4.1034 37 1 3.5038 -1.4880 -3.1881 38 1 3.5583 -2.5602 -6.7110 39 1 3.8108 -1.3092 0.2882 40 1 3.9177 0.2113 1.2087 41 1 5.8076 -2.1575 3.3412 42 1 5.8520 -2.0988 1.5627 43 1 5.8657 -0.5879 2.5036 44 1 0.3221 -2.1165 3.6178 45 1 1.7470 -2.7524 2.7589 46 1 2.9203 -3.0772 4.9024 47 1 1.3584 -3.9312 4.9274 48 1 3.1254 -1.0026 6.1519 49 1 1.7069 -0.4091 7.0487 50 1 2.1075 0.8992 4.9582 51 1 0.5369 0.0595 4.9287 52 1 1.9479 0.9897 2.4586 53 1 0.4606 0.0120 2.4214 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000369282876.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:24:46 Heat of formation + Delta-G solvation = -135.354399 kcal Electronic energy + Delta-G solvation = -32561.492279 eV Core-core repulsion = 28432.660613 eV Total energy + Delta-G solvation = -4128.831666 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.97166 -40.76597 -39.01287 -37.07534 -36.51019 -34.92837 -34.75506 -32.74386 -32.07111 -31.28376 -29.73882 -28.60021 -27.40764 -26.15380 -25.68103 -24.78359 -24.10197 -22.70441 -22.01111 -20.41809 -19.84817 -18.70358 -18.20897 -17.76700 -17.52736 -17.03154 -16.94292 -16.71537 -16.41085 -16.04683 -15.91689 -15.69773 -15.59110 -15.14305 -14.92706 -14.57673 -14.20283 -14.02146 -13.82639 -13.75011 -13.57041 -13.45248 -13.32921 -13.21158 -13.17820 -13.04291 -12.92901 -12.79638 -12.63995 -12.59768 -12.46955 -12.36866 -12.25172 -12.22084 -11.95438 -11.69392 -11.35118 -11.20236 -10.72896 -10.66824 -10.52059 -10.24595 -9.44737 -9.35745 -8.24262 -6.38670 1.34461 1.37170 1.48773 1.76972 2.15667 2.38700 2.56747 2.76400 2.98824 3.05349 3.50939 3.66294 3.70932 3.78604 3.86768 3.97850 4.02243 4.07562 4.14402 4.24420 4.30145 4.32106 4.34726 4.39873 4.48877 4.55801 4.61889 4.64563 4.71124 4.72118 4.73015 4.77924 4.82548 4.85170 4.89033 4.90567 4.94843 4.98737 5.09558 5.14189 5.18509 5.21031 5.23996 5.28352 5.53985 5.74701 5.83278 5.93956 6.04299 6.21318 6.27671 6.68690 6.76943 7.27149 7.47998 8.82960 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.018936 B = 0.002822 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.276536 B = 9918.363085 C =10045.371910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.077 3.923 3 H 0.080 0.920 4 C 0.502 3.498 5 O -0.575 6.575 6 N -0.612 5.612 7 C 0.076 3.924 8 C 0.263 3.737 9 C -0.539 4.539 10 H 0.052 0.948 11 C 0.007 3.993 12 N -0.929 5.929 13 Si 0.967 3.033 14 H -0.267 1.267 15 H -0.268 1.268 16 H -0.282 1.282 17 N -0.526 5.526 18 C 0.028 3.972 19 C 0.097 3.903 20 H 0.056 0.944 21 C -0.139 4.139 22 O -0.374 6.374 23 C 0.119 3.881 24 C -0.167 4.167 25 C 0.067 3.933 26 O -0.398 6.398 27 C 0.061 3.939 28 C -0.133 4.133 29 C 0.032 3.968 30 H 0.048 0.952 31 H 0.100 0.900 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.093 0.907 36 H 0.023 0.977 37 H -0.005 1.005 38 H 0.267 0.733 39 H 0.059 0.941 40 H 0.042 0.958 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.067 0.933 44 H 0.083 0.917 45 H 0.068 0.932 46 H 0.046 0.954 47 H 0.099 0.901 48 H 0.050 0.950 49 H 0.114 0.886 50 H 0.093 0.907 51 H 0.100 0.900 52 H 0.053 0.947 53 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.514 9.323 23.229 25.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.035 4.035 3 H 0.098 0.902 4 C 0.290 3.710 5 O -0.454 6.454 6 N -0.344 5.344 7 C -0.066 4.066 8 C 0.142 3.858 9 C -0.577 4.577 10 H 0.070 0.930 11 C -0.192 4.192 12 N -0.569 5.569 13 Si 0.791 3.209 14 H -0.191 1.191 15 H -0.193 1.193 16 H -0.208 1.208 17 N -0.251 5.251 18 C -0.101 4.101 19 C 0.039 3.961 20 H 0.074 0.926 21 C -0.196 4.196 22 O -0.294 6.294 23 C 0.079 3.921 24 C -0.205 4.205 25 C -0.010 4.010 26 O -0.318 6.318 27 C -0.015 4.015 28 C -0.170 4.170 29 C -0.095 4.095 30 H 0.067 0.933 31 H 0.118 0.882 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.112 0.888 36 H 0.041 0.959 37 H 0.013 0.987 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.060 0.940 41 H 0.095 0.905 42 H 0.088 0.912 43 H 0.086 0.914 44 H 0.102 0.898 45 H 0.087 0.913 46 H 0.065 0.935 47 H 0.117 0.883 48 H 0.068 0.932 49 H 0.132 0.868 50 H 0.111 0.889 51 H 0.118 0.882 52 H 0.071 0.929 53 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -3.485 8.180 23.360 24.994 hybrid contribution 0.235 0.003 -1.851 1.866 sum -3.250 8.183 21.508 23.240 Atomic orbital electron populations 1.21809 0.90365 1.02874 1.04244 1.21636 0.98489 0.95840 0.87502 0.90215 1.21032 0.77689 0.87291 0.84984 1.90636 1.52971 1.16892 1.84927 1.48212 1.61281 1.11865 1.13085 1.21966 1.01295 0.79555 1.03831 1.18709 0.92934 0.91697 0.82482 1.21702 0.93385 1.35685 1.06946 0.92995 1.25854 0.98089 0.96140 0.99107 1.70053 1.18531 1.42914 1.25380 0.85378 0.79032 0.77944 0.78525 1.19125 1.19324 1.20837 1.61881 1.09743 1.52316 1.01186 1.22758 0.87970 0.99615 0.99707 1.22023 0.95598 0.95181 0.83257 0.92607 1.21714 0.91518 1.03312 1.03093 1.87949 1.20933 1.79719 1.40786 1.21582 0.80728 0.94782 0.94998 1.22574 1.02116 0.96930 0.98888 1.22507 0.99214 0.94917 0.84316 1.87880 1.70683 1.29009 1.44183 1.22646 0.97534 0.82779 0.98529 1.22170 1.03156 0.99669 0.92051 1.22915 1.02387 0.95998 0.88187 0.93281 0.88169 0.90628 0.91525 0.91330 0.88834 0.95906 0.98668 0.92416 0.92246 0.93999 0.90512 0.91152 0.91394 0.89840 0.91300 0.93539 0.88331 0.93207 0.86810 0.88859 0.88160 0.92904 0.87544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 8.87 71.98 0.64 -2.59 16 2 C 0.08 2.21 1.61 44.17 0.07 2.28 16 3 H 0.08 1.92 6.80 -2.39 -0.02 1.90 16 4 C 0.50 20.98 5.70 87.66 0.50 21.48 16 5 O -0.58 -30.17 15.06 -3.01 -0.05 -30.22 16 6 N -0.61 -26.05 2.86 -851.15 -2.43 -28.49 16 7 C 0.08 2.25 9.88 127.77 1.26 3.51 16 8 C 0.26 14.30 5.14 85.63 0.44 14.74 16 9 C -0.54 -31.31 9.39 25.60 0.24 -31.07 16 10 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 11 C 0.01 0.40 5.46 84.65 0.46 0.86 16 12 N -0.93 -56.52 13.29 21.45 0.28 -56.23 16 13 Si 0.97 45.30 29.54 68.60 2.03 47.33 16 14 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 15 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 16 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 17 N -0.53 -14.71 3.79 -874.53 -3.32 -18.03 16 18 C 0.03 0.83 4.55 86.32 0.39 1.22 16 19 C 0.10 2.51 3.03 30.63 0.09 2.60 16 20 H 0.06 1.60 6.44 -2.38 -0.02 1.59 16 21 C -0.14 -3.03 9.57 71.98 0.69 -2.34 16 22 O -0.37 -8.67 8.89 -148.98 -1.32 -10.00 16 23 C 0.12 2.36 0.69 -10.74 -0.01 2.36 16 24 C -0.17 -3.62 4.52 30.66 0.14 -3.48 16 25 C 0.07 1.37 6.70 72.02 0.48 1.86 16 26 O -0.40 -8.26 10.76 -148.98 -1.60 -9.86 16 27 C 0.06 0.97 6.70 72.02 0.48 1.46 16 28 C -0.13 -1.92 5.15 30.66 0.16 -1.77 16 29 C 0.03 0.65 4.04 86.27 0.35 1.00 16 30 H 0.05 1.42 8.14 -2.38 -0.02 1.41 16 31 H 0.10 1.64 6.19 -2.39 -0.01 1.62 16 32 H 0.07 1.68 6.98 -2.39 -0.02 1.66 16 33 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.07 2.13 8.11 -2.39 -0.02 2.11 16 35 H 0.09 2.11 5.24 -2.39 -0.01 2.09 16 36 H 0.02 1.26 8.07 -2.39 -0.02 1.24 16 37 H 0.00 -0.30 7.50 -2.39 -0.02 -0.32 16 38 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 39 H 0.06 2.26 6.12 -2.39 -0.01 2.24 16 40 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.07 1.85 6.10 -2.39 -0.01 1.84 16 46 H 0.05 1.00 7.82 -2.39 -0.02 0.98 16 47 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 48 H 0.05 0.87 7.82 -2.38 -0.02 0.85 16 49 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 50 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 51 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 52 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 53 H 0.11 1.78 6.12 -2.39 -0.01 1.76 16 Total: -1.00 -75.69 399.64 0.86 -74.83 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: 0.88 Total: 18.54 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: 6.39 Total: 12.12 kcal Atomic # 7 Polarization: -97.28 SS G_CDS: -5.46 Total: -102.74 kcal Atomic # 8 Polarization: -47.10 SS G_CDS: -2.97 Total: -50.07 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -75.69 0.86 -74.83 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000369282876.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.526 kcal (2) G-P(sol) polarization free energy of solvation -75.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds