Wall clock time and date at job start Wed Apr 1 2020 00:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08992 * 109.46980 * 2 1 4 4 C 1.50693 * 109.47045 * 239.99497 * 2 1 3 5 5 O 1.21283 * 120.00110 * 269.69605 * 4 2 1 6 6 N 1.34779 * 119.99749 * 89.70061 * 4 2 1 7 7 C 1.46493 * 120.00062 * 354.87400 * 6 4 2 8 8 C 1.46503 * 119.99704 * 174.87728 * 6 4 2 9 9 C 1.50698 * 109.47244 * 90.00087 * 8 6 4 10 10 H 1.07997 * 119.99956 * 359.97438 * 9 8 6 11 11 C 1.37875 * 119.99916 * 179.97438 * 9 8 6 12 12 N 1.31514 * 120.00254 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00001 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46942 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.47042 * 120.00181 * 13 11 9 16 16 H 1.48500 * 109.47124 * 240.00021 * 13 11 9 17 17 N 1.46918 * 109.46554 * 119.99794 * 2 1 3 18 18 C 1.47126 * 110.90546 * 181.41218 * 17 2 1 19 19 C 1.53106 * 108.60587 * 185.52687 * 18 17 2 20 20 H 1.09150 * 109.04127 * 63.83062 * 19 18 17 21 21 C 1.53212 * 109.25615 * 182.79395 * 19 18 17 22 22 O 1.42517 * 109.92965 * 303.02581 * 19 18 17 23 23 C 1.41245 * 117.28759 * 51.18429 * 22 19 18 24 24 C 1.55156 * 109.94603 * 190.91476 * 23 22 19 25 25 C 1.55008 * 100.61746 * 204.55009 * 24 23 22 26 26 O 1.43791 * 105.36831 * 35.57046 * 25 24 23 27 27 C 1.43675 * 110.07502 * 339.33820 * 26 25 24 28 28 H 1.08896 * 110.24340 * 236.84501 * 27 26 25 29 29 C 1.53135 * 109.30070 * 115.88641 * 27 26 25 30 30 C 1.46982 * 111.04624 * 304.15313 * 17 2 1 31 31 H 1.09007 * 109.47173 * 57.65900 * 1 2 3 32 32 H 1.09003 * 109.47544 * 297.66313 * 1 2 3 33 33 H 1.08996 * 109.47533 * 177.65616 * 1 2 3 34 34 H 1.08998 * 109.47337 * 94.40996 * 7 6 4 35 35 H 1.09000 * 109.47391 * 214.40673 * 7 6 4 36 36 H 1.08999 * 109.47548 * 334.41033 * 7 6 4 37 37 H 1.09005 * 109.46816 * 210.00139 * 8 6 4 38 38 H 1.09000 * 109.47399 * 329.99452 * 8 6 4 39 39 H 0.96999 * 120.00690 * 179.97438 * 12 11 9 40 40 H 1.08894 * 109.57603 * 305.26597 * 18 17 2 41 41 H 1.08891 * 109.53593 * 65.76007 * 18 17 2 42 42 H 1.09001 * 109.47051 * 59.99516 * 21 19 18 43 43 H 1.09001 * 109.47439 * 180.02562 * 21 19 18 44 44 H 1.09000 * 109.46759 * 300.00349 * 21 19 18 45 45 H 1.08647 * 110.88089 * 322.67953 * 24 23 22 46 46 H 1.08818 * 110.60756 * 86.95756 * 24 23 22 47 47 H 1.09267 * 110.40282 * 155.16110 * 25 24 23 48 48 H 1.09356 * 110.14718 * 276.30998 * 25 24 23 49 49 H 1.08993 * 109.47386 * 302.55309 * 29 27 26 50 50 H 1.09001 * 109.46925 * 62.55905 * 29 27 26 51 51 H 1.09006 * 109.46769 * 182.55569 * 29 27 26 52 52 H 1.09125 * 109.40340 * 299.25479 * 30 17 2 53 53 H 1.09173 * 109.24898 * 58.55574 * 30 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2303 5 8 2.2397 -1.9050 -1.1986 6 7 2.2511 -0.0184 -2.3660 7 6 1.8953 1.4008 -2.4390 8 6 2.8448 -0.6855 -3.5274 9 6 1.7511 -1.2632 -4.3883 10 1 0.7173 -1.1456 -4.0991 11 6 2.0704 -1.9418 -5.5452 12 7 3.3294 -2.0854 -5.8972 13 14 0.7148 -2.6585 -6.6120 14 1 -0.6054 -2.3622 -6.0001 15 1 0.7789 -2.0535 -7.9667 16 1 0.8932 -4.1289 -6.7177 17 7 2.0196 -0.6926 1.1996 18 6 3.4900 -0.6818 1.2487 19 6 3.9453 -1.5315 2.4382 20 1 3.6405 -2.5666 2.2738 21 6 5.4726 -1.4738 2.5452 22 8 3.3641 -1.0346 3.6409 23 6 1.9658 -0.8356 3.6503 24 6 1.5523 -0.0445 4.9194 25 6 0.0754 -0.4917 5.0661 26 8 0.0499 -1.8664 4.6454 27 6 1.1963 -2.1534 3.8283 28 1 0.8815 -2.5349 2.8581 29 6 2.0760 -3.1880 4.5360 30 6 1.4694 -0.0866 2.4205 31 1 -0.3634 0.5498 -0.8683 32 1 -0.3634 0.4771 0.9102 33 1 -0.3634 -1.0267 -0.0420 34 1 2.7684 2.0072 -2.1980 35 1 1.5548 1.6387 -3.4467 36 1 1.0981 1.6127 -1.7265 37 1 3.4199 0.0370 -4.1067 38 1 3.5026 -1.4863 -3.1896 39 1 3.5541 -2.5632 -6.7110 40 1 3.8889 -1.1004 0.3260 41 1 3.8427 0.3410 1.3723 42 1 5.7877 -0.4407 2.6922 43 1 5.8007 -2.0781 3.3909 44 1 5.9159 -1.8617 1.6281 45 1 2.1480 -0.3477 5.7759 46 1 1.6230 1.0269 4.7428 47 1 -0.2492 -0.3993 6.1053 48 1 -0.5681 0.1180 4.4257 49 1 2.3659 -2.8090 5.5159 50 1 1.5191 -4.1173 4.6559 51 1 2.9693 -3.3741 3.9396 52 1 1.7823 0.9572 2.4799 53 1 0.3791 -0.1301 2.3840 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000369303962.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:21 Heat of formation + Delta-G solvation = -128.876255 kcal Electronic energy + Delta-G solvation = -32704.229507 eV Core-core repulsion = 28575.678754 eV Total energy + Delta-G solvation = -4128.550752 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.12947 -40.83520 -39.10601 -37.25654 -36.51916 -34.75836 -34.35512 -32.67983 -32.20455 -31.12979 -29.74116 -28.72012 -27.40985 -26.31163 -26.01895 -24.94689 -23.24711 -22.69698 -22.52888 -20.67864 -19.86772 -18.70207 -18.26863 -17.92103 -17.71789 -17.08650 -16.98077 -16.60556 -16.44950 -16.07481 -15.98335 -15.40175 -15.16417 -15.00598 -14.61426 -14.52417 -14.17664 -14.16837 -13.97529 -13.78245 -13.52950 -13.43426 -13.40592 -13.29594 -13.21558 -13.01807 -12.92153 -12.84433 -12.71196 -12.64026 -12.49321 -12.35486 -12.22499 -12.17826 -12.07442 -11.89539 -11.69265 -11.16795 -10.67354 -10.66099 -10.51246 -10.41281 -9.44380 -9.40299 -8.23966 -6.38279 1.34442 1.37279 1.48739 1.76886 2.11953 2.32792 2.39466 2.74270 2.96500 3.05620 3.33767 3.50195 3.61953 3.68824 3.84889 3.94658 4.00068 4.07472 4.13388 4.20786 4.27459 4.28853 4.33751 4.39384 4.44721 4.49772 4.58064 4.61177 4.65293 4.68139 4.70401 4.75541 4.84737 4.86319 4.89621 4.91821 4.98545 4.98839 5.06551 5.14955 5.18840 5.19452 5.20025 5.28450 5.54361 5.71352 5.81929 5.87468 6.04022 6.04887 6.31488 6.69154 6.77600 7.27595 7.48898 8.83154 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016519 B = 0.003032 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.584221 B = 9232.599334 C = 9557.031137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.077 3.923 3 H 0.086 0.914 4 C 0.502 3.498 5 O -0.576 6.576 6 N -0.612 5.612 7 C 0.075 3.925 8 C 0.264 3.736 9 C -0.539 4.539 10 H 0.051 0.949 11 C 0.007 3.993 12 N -0.928 5.928 13 Si 0.966 3.034 14 H -0.268 1.268 15 H -0.268 1.268 16 H -0.283 1.283 17 N -0.530 5.530 18 C 0.025 3.975 19 C 0.100 3.900 20 H 0.049 0.951 21 C -0.138 4.138 22 O -0.359 6.359 23 C 0.100 3.900 24 C -0.133 4.133 25 C 0.044 3.956 26 O -0.395 6.395 27 C 0.061 3.939 28 H 0.067 0.933 29 C -0.148 4.148 30 C 0.031 3.969 31 H 0.077 0.923 32 H 0.099 0.901 33 H 0.046 0.954 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.093 0.907 37 H 0.024 0.976 38 H -0.005 1.005 39 H 0.267 0.733 40 H 0.059 0.941 41 H 0.055 0.945 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.072 0.928 45 H 0.092 0.908 46 H 0.111 0.889 47 H 0.105 0.895 48 H 0.077 0.923 49 H 0.066 0.934 50 H 0.055 0.945 51 H 0.062 0.938 52 H 0.065 0.935 53 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.174 10.992 23.293 25.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.034 4.034 3 H 0.103 0.897 4 C 0.290 3.710 5 O -0.455 6.455 6 N -0.344 5.344 7 C -0.067 4.067 8 C 0.142 3.858 9 C -0.578 4.578 10 H 0.070 0.930 11 C -0.191 4.191 12 N -0.568 5.568 13 Si 0.791 3.209 14 H -0.192 1.192 15 H -0.193 1.193 16 H -0.209 1.209 17 N -0.256 5.256 18 C -0.103 4.103 19 C 0.042 3.958 20 H 0.067 0.933 21 C -0.196 4.196 22 O -0.277 6.277 23 C 0.059 3.941 24 C -0.171 4.171 25 C -0.032 4.032 26 O -0.315 6.315 27 C 0.003 3.997 28 H 0.085 0.915 29 C -0.205 4.205 30 C -0.096 4.096 31 H 0.096 0.904 32 H 0.118 0.882 33 H 0.065 0.935 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.112 0.888 37 H 0.042 0.958 38 H 0.013 0.987 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.091 0.909 43 H 0.095 0.905 44 H 0.090 0.910 45 H 0.111 0.889 46 H 0.129 0.871 47 H 0.123 0.877 48 H 0.095 0.905 49 H 0.085 0.915 50 H 0.074 0.926 51 H 0.081 0.919 52 H 0.083 0.917 53 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.160 9.724 23.325 25.467 hybrid contribution 0.033 -0.092 -1.605 1.608 sum -3.126 9.632 21.719 23.964 Atomic orbital electron populations 1.21848 0.90566 1.02847 1.04340 1.21629 0.98289 0.96003 0.87457 0.89650 1.21017 0.77752 0.87266 0.84986 1.90648 1.52859 1.16983 1.84971 1.48199 1.61292 1.11976 1.12941 1.21974 1.01326 0.79549 1.03830 1.18706 0.92897 0.91721 0.82465 1.21710 0.93427 1.35646 1.07007 0.93038 1.25842 0.98069 0.96160 0.99079 1.70047 1.18503 1.42898 1.25374 0.85390 0.79043 0.77953 0.78564 1.19200 1.19268 1.20865 1.62051 1.07527 1.54740 1.01232 1.22807 0.87947 0.99843 0.99695 1.22042 0.94871 0.96101 0.82776 0.93254 1.21779 0.90867 1.03725 1.03200 1.87252 1.19581 1.85312 1.35589 1.22363 0.81807 0.93976 0.95942 1.23265 0.96226 1.01610 0.95958 1.23672 0.95502 0.82008 1.02019 1.88530 1.44614 1.28990 1.69358 1.23044 0.86649 0.96128 0.93918 0.91454 1.21953 0.99034 0.98412 1.01119 1.22842 1.01832 0.97052 0.87856 0.90375 0.88200 0.93488 0.91340 0.91372 0.88847 0.95810 0.98684 0.92416 0.92207 0.92726 0.90929 0.90461 0.90957 0.88897 0.87111 0.87672 0.90467 0.91538 0.92571 0.91928 0.91663 0.87946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 8.70 71.98 0.63 -2.74 16 2 C 0.08 2.23 1.60 44.16 0.07 2.30 16 3 H 0.09 1.97 6.81 -2.39 -0.02 1.95 16 4 C 0.50 21.01 5.68 87.65 0.50 21.51 16 5 O -0.58 -30.51 15.48 -3.04 -0.05 -30.56 16 6 N -0.61 -25.91 2.86 -851.15 -2.43 -28.34 16 7 C 0.08 2.21 9.88 127.77 1.26 3.47 16 8 C 0.26 14.29 5.14 85.63 0.44 14.73 16 9 C -0.54 -31.42 9.39 25.60 0.24 -31.18 16 10 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 11 C 0.01 0.43 5.46 84.65 0.46 0.89 16 12 N -0.93 -56.52 13.29 21.45 0.28 -56.23 16 13 Si 0.97 45.49 29.54 68.60 2.03 47.51 16 14 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 15 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 16 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 17 N -0.53 -14.97 4.29 -875.58 -3.76 -18.73 16 18 C 0.03 0.72 4.63 86.30 0.40 1.12 16 19 C 0.10 2.53 2.97 30.70 0.09 2.62 16 20 H 0.05 1.47 6.92 -2.31 -0.02 1.45 16 21 C -0.14 -2.82 9.57 72.05 0.69 -2.13 16 22 O -0.36 -8.17 8.55 -148.20 -1.27 -9.44 16 23 C 0.10 2.05 0.79 -10.06 -0.01 2.05 16 24 C -0.13 -1.85 6.28 32.02 0.20 -1.65 16 25 C 0.04 0.62 7.33 72.67 0.53 1.16 16 26 O -0.39 -9.10 11.02 -148.98 -1.64 -10.74 16 27 C 0.06 1.47 3.46 30.86 0.11 1.58 16 28 H 0.07 2.02 7.87 -2.44 -0.02 2.00 16 29 C -0.15 -3.42 8.94 72.03 0.64 -2.77 16 30 C 0.03 0.64 3.52 86.06 0.30 0.95 16 31 H 0.08 1.76 6.97 -2.38 -0.02 1.74 16 32 H 0.10 1.68 6.18 -2.39 -0.01 1.67 16 33 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.07 2.10 8.10 -2.39 -0.02 2.08 16 36 H 0.09 2.06 5.24 -2.39 -0.01 2.05 16 37 H 0.02 1.31 8.07 -2.38 -0.02 1.29 16 38 H 0.00 -0.31 7.50 -2.39 -0.02 -0.33 16 39 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 40 H 0.06 2.16 6.45 -2.44 -0.02 2.14 16 41 H 0.05 1.36 8.13 -2.44 -0.02 1.34 16 42 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.09 1.30 8.11 -2.57 -0.02 1.28 16 46 H 0.11 1.06 7.83 -2.48 -0.02 1.04 16 47 H 0.11 1.09 8.16 -2.25 -0.02 1.08 16 48 H 0.08 0.88 7.80 -2.20 -0.02 0.87 16 49 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 50 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 51 H 0.06 1.51 5.93 -2.38 -0.01 1.50 16 52 H 0.07 1.08 7.94 -2.32 -0.02 1.06 16 53 H 0.10 1.91 5.35 -2.30 -0.01 1.90 16 Total: -1.00 -77.14 402.19 0.61 -76.53 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: 0.88 Total: 18.12 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: 6.56 Total: 11.88 kcal Atomic # 7 Polarization: -97.40 SS G_CDS: -5.90 Total: -103.30 kcal Atomic # 8 Polarization: -47.78 SS G_CDS: -2.96 Total: -50.74 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.51 kcal Total: -77.14 0.61 -76.53 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000369303962.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.345 kcal (2) G-P(sol) polarization free energy of solvation -77.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds