Wall clock time and date at job start Tue Mar 31 2020 23:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09008 * 110.04543 * 2 1 4 4 O 1.43889 * 109.90757 * 238.82476 * 2 1 3 5 5 C 1.44433 * 106.99200 * 214.24956 * 4 2 1 6 6 C 1.55106 * 103.55584 * 39.73369 * 5 4 2 7 7 C 1.53566 * 109.90728 * 121.17219 * 2 1 3 8 8 C 1.52658 * 110.37923 * 3.24802 * 7 2 1 9 9 N 1.47270 * 108.45234 * 287.55624 * 8 7 2 10 10 C 1.34783 * 121.04305 * 130.48185 * 9 8 7 11 11 O 1.21586 * 119.99896 * 355.37371 * 10 9 8 12 12 N 1.34778 * 119.99887 * 175.37612 * 10 9 8 13 13 C 1.46495 * 120.00012 * 184.92200 * 12 10 9 14 14 C 1.52997 * 109.47403 * 179.97438 * 13 12 10 15 15 C 1.53004 * 109.46933 * 300.00004 * 14 13 12 16 16 C 1.53000 * 109.47133 * 59.99559 * 14 13 12 17 17 C 1.52995 * 109.47437 * 179.97438 * 14 13 12 18 18 C 1.50697 * 109.47218 * 179.97438 * 17 14 13 19 19 H 1.07997 * 120.00437 * 0.02562 * 18 17 14 20 20 C 1.37886 * 120.00097 * 179.97438 * 18 17 14 21 21 N 1.31517 * 119.99732 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99964 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47217 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.46721 * 120.00190 * 22 20 18 25 25 H 1.48497 * 109.46860 * 240.00192 * 22 20 18 26 26 C 1.47163 * 117.91176 * 310.46354 * 9 8 7 27 27 C 1.53284 * 108.46853 * 51.11954 * 26 9 8 28 28 O 1.42218 * 110.66272 * 240.17981 * 7 2 1 29 29 H 1.09003 * 109.47348 * 305.49643 * 1 2 3 30 30 H 1.08997 * 109.47421 * 65.49529 * 1 2 3 31 31 H 1.09002 * 109.47346 * 185.49684 * 1 2 3 32 32 H 1.08998 * 110.60517 * 281.21854 * 5 4 2 33 33 H 1.08998 * 110.60550 * 158.25324 * 5 4 2 34 34 H 1.08995 * 110.93075 * 205.22841 * 6 5 4 35 35 H 1.09006 * 110.95775 * 81.57704 * 6 5 4 36 36 H 1.08999 * 109.64177 * 47.24553 * 8 7 2 37 37 H 1.08997 * 109.64394 * 167.87566 * 8 7 2 38 38 H 0.97002 * 119.99755 * 4.91604 * 12 10 9 39 39 H 1.08999 * 109.47144 * 300.00043 * 13 12 10 40 40 H 1.09001 * 109.47015 * 59.99581 * 13 12 10 41 41 H 1.09001 * 109.47457 * 59.99809 * 15 14 13 42 42 H 1.08998 * 109.47179 * 179.97438 * 15 14 13 43 43 H 1.09001 * 109.46970 * 300.00048 * 15 14 13 44 44 H 1.08999 * 109.46665 * 60.00360 * 16 14 13 45 45 H 1.08998 * 109.47329 * 180.02562 * 16 14 13 46 46 H 1.09001 * 109.47157 * 300.00130 * 16 14 13 47 47 H 1.08999 * 109.47202 * 300.00155 * 17 14 13 48 48 H 1.09007 * 109.47132 * 60.00038 * 17 14 13 49 49 H 0.96993 * 119.99720 * 179.97438 * 21 20 18 50 50 H 1.08999 * 109.63873 * 291.42472 * 26 9 8 51 51 H 1.09000 * 109.81080 * 170.91028 * 26 9 8 52 52 H 1.08996 * 109.51512 * 187.17994 * 27 26 9 53 53 H 1.09004 * 109.55065 * 67.05287 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9036 1.0240 0.0000 4 8 2.0199 -0.7003 -1.1575 5 6 3.2372 -1.3697 -0.7620 6 6 2.9193 -1.8894 0.6643 7 6 2.0529 -0.7474 1.2354 8 6 0.8905 -1.3273 2.0374 9 7 0.1924 -0.2206 2.7131 10 6 -1.1472 -0.0935 2.6359 11 8 -1.7900 -0.8494 1.9331 12 7 -1.7742 0.8714 3.3376 13 6 -3.2374 0.9425 3.3393 14 6 -3.6899 2.1188 4.2066 15 6 -3.1873 1.9201 5.6380 16 6 -3.1166 3.4197 3.6409 17 6 -5.2180 2.1935 4.2079 18 6 -5.6636 3.3518 5.0627 19 1 -4.9303 3.9729 5.5554 20 6 -7.0077 3.6194 5.2149 21 7 -7.9007 2.8640 4.6137 22 14 -7.5600 5.0556 6.2739 23 1 -6.3695 5.7444 6.8339 24 1 -8.3396 6.0102 5.4456 25 1 -8.4099 4.5543 7.3836 26 6 1.0033 0.7420 3.4757 27 6 2.1412 1.2382 2.5764 28 8 2.8459 0.1128 2.0439 29 1 -0.3634 0.5967 0.8367 30 1 -0.3634 0.4262 -0.9351 31 1 -0.3634 -1.0229 0.0984 32 1 4.0705 -0.6675 -0.7376 33 1 3.4538 -2.2004 -1.4337 34 1 3.8326 -2.0135 1.2461 35 1 2.3564 -2.8220 0.6230 36 1 0.2014 -1.8394 1.3658 37 1 1.2714 -2.0279 2.7803 38 1 -1.2565 1.5186 3.8416 39 1 -3.5955 1.0836 2.3195 40 1 -3.6457 0.0159 3.7427 41 1 -2.0985 1.8671 5.6368 42 1 -3.5092 2.7583 6.2558 43 1 -3.5956 0.9933 6.0410 44 1 -3.4747 3.5613 2.6212 45 1 -3.4386 4.2578 4.2591 46 1 -2.0279 3.3668 3.6397 47 1 -5.5757 2.3353 3.1881 48 1 -5.6267 1.2668 4.6107 49 1 -8.8462 3.0520 4.7210 50 1 1.4192 0.2536 4.3569 51 1 0.3844 1.5853 3.7822 52 1 2.8255 1.8530 3.1610 53 1 1.7286 1.8294 1.7588 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000377028000.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:53 Heat of formation + Delta-G solvation = -121.536340 kcal Electronic energy + Delta-G solvation = -32234.169655 eV Core-core repulsion = 28105.937185 eV Total energy + Delta-G solvation = -4128.232470 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.50873 -40.78880 -38.94594 -38.47313 -35.90514 -35.34623 -34.17301 -33.40521 -32.51324 -30.11442 -29.21164 -28.42030 -27.96109 -27.08548 -25.95722 -24.74552 -24.07644 -23.32179 -21.54370 -20.57167 -19.92809 -19.02732 -18.47824 -18.35668 -17.39575 -17.07964 -16.84005 -16.59366 -16.50289 -16.16170 -15.62966 -15.60573 -15.52881 -15.28824 -15.02933 -14.69269 -14.55405 -14.38668 -13.94689 -13.84112 -13.74738 -13.57964 -13.14845 -13.01217 -12.85889 -12.69731 -12.62105 -12.56647 -12.47521 -12.34447 -12.23546 -12.16177 -12.07636 -11.94187 -11.68305 -11.53582 -11.22864 -11.09516 -10.95650 -10.83237 -10.70190 -10.51572 -10.17367 -9.43429 -8.13411 -6.20990 1.42177 1.42984 1.46872 1.54924 2.06957 2.44411 2.47878 2.84691 2.89971 3.21386 3.32673 3.47734 3.62320 3.84677 3.94587 3.98497 4.07651 4.09426 4.15764 4.19986 4.23042 4.33501 4.40981 4.46003 4.51665 4.63309 4.68770 4.69914 4.73176 4.78063 4.79666 4.82778 4.88500 4.94600 4.96151 5.00852 5.10995 5.12768 5.21626 5.33053 5.40271 5.48884 5.51039 5.54498 5.58979 5.79071 5.81221 5.83209 5.90969 6.08639 6.31329 6.89452 6.95106 7.46715 7.50205 8.99384 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.026928 B = 0.002386 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.559891 B =11731.926549 C =12038.424734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.060 3.940 3 H 0.071 0.929 4 O -0.395 6.395 5 C 0.042 3.958 6 C -0.136 4.136 7 C 0.082 3.918 8 C 0.110 3.890 9 N -0.631 5.631 10 C 0.705 3.295 11 O -0.624 6.624 12 N -0.725 5.725 13 C 0.162 3.838 14 C -0.063 4.063 15 C -0.120 4.120 16 C -0.120 4.120 17 C 0.039 3.961 18 C -0.510 4.510 19 H 0.074 0.926 20 C -0.007 4.007 21 N -0.939 5.939 22 Si 0.958 3.042 23 H -0.255 1.255 24 H -0.286 1.286 25 H -0.285 1.285 26 C 0.071 3.929 27 C 0.041 3.959 28 O -0.364 6.364 29 H 0.068 0.932 30 H 0.044 0.956 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.115 0.885 34 H 0.113 0.887 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.407 0.593 39 H 0.042 0.958 40 H 0.043 0.957 41 H 0.068 0.932 42 H 0.056 0.944 43 H 0.036 0.964 44 H 0.035 0.965 45 H 0.057 0.943 46 H 0.068 0.932 47 H -0.015 1.015 48 H -0.014 1.014 49 H 0.259 0.741 50 H 0.097 0.903 51 H 0.102 0.898 52 H 0.141 0.859 53 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.756 -5.418 -3.533 29.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.002 3.998 3 H 0.089 0.911 4 O -0.315 6.315 5 C -0.034 4.034 6 C -0.173 4.173 7 C 0.041 3.959 8 C -0.013 4.013 9 N -0.370 5.370 10 C 0.407 3.593 11 O -0.505 6.505 12 N -0.383 5.383 13 C 0.037 3.963 14 C -0.063 4.063 15 C -0.177 4.177 16 C -0.177 4.177 17 C 0.002 3.998 18 C -0.548 4.548 19 H 0.092 0.908 20 C -0.203 4.203 21 N -0.580 5.580 22 Si 0.784 3.216 23 H -0.179 1.179 24 H -0.212 1.212 25 H -0.211 1.211 26 C -0.052 4.052 27 C -0.036 4.036 28 O -0.282 6.282 29 H 0.086 0.914 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.120 0.880 36 H 0.112 0.888 37 H 0.107 0.893 38 H 0.247 0.753 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.087 0.913 42 H 0.075 0.925 43 H 0.055 0.945 44 H 0.054 0.946 45 H 0.076 0.924 46 H 0.087 0.913 47 H 0.004 0.996 48 H 0.004 0.996 49 H 0.068 0.932 50 H 0.115 0.885 51 H 0.120 0.880 52 H 0.159 0.841 53 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 28.195 -6.003 -4.193 29.130 hybrid contribution -1.372 0.918 0.558 1.743 sum 26.823 -5.084 -3.635 27.541 Atomic orbital electron populations 1.22264 0.93635 1.03148 1.01559 1.23205 0.94858 0.96151 0.85586 0.91111 1.88943 1.41266 1.67909 1.33343 1.23808 0.86978 0.97171 0.95448 1.23121 1.01398 0.96503 0.96314 1.22696 0.91619 0.91680 0.89950 1.22157 0.93425 0.88808 0.96957 1.47398 1.03784 1.30537 1.55252 1.15857 0.81840 0.81443 0.80123 1.90911 1.65841 1.48388 1.45387 1.45199 1.07228 1.32766 1.53135 1.21060 0.78223 0.98043 0.98954 1.20699 0.96415 0.93821 0.95413 1.21679 0.99809 1.01304 0.94916 1.21681 0.99503 0.96653 0.99903 1.18976 0.90380 0.95506 0.94985 1.21613 0.91693 1.13024 1.28476 0.90798 1.25960 0.97483 0.99355 0.97538 1.70131 1.01363 1.41008 1.45546 0.85493 0.78608 0.79196 0.78324 1.17888 1.21206 1.21140 1.22590 0.93742 0.93279 0.95584 1.23241 0.95153 0.88116 0.97075 1.87892 1.36226 1.37655 1.66467 0.91372 0.93654 0.91694 0.91096 0.86742 0.86842 0.87976 0.88808 0.89336 0.75347 0.93941 0.93826 0.91289 0.92464 0.94454 0.94569 0.92428 0.91349 0.99636 0.99558 0.93227 0.88533 0.88010 0.84088 0.92874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.92 7.38 71.98 0.53 -3.39 16 2 C 0.06 1.28 3.25 30.78 0.10 1.38 16 3 H 0.07 1.49 6.69 -2.38 -0.02 1.47 16 4 O -0.39 -8.87 11.20 -148.98 -1.67 -10.53 16 5 C 0.04 0.58 7.73 72.70 0.56 1.14 16 6 C -0.14 -1.67 6.43 31.76 0.20 -1.47 16 7 C 0.08 1.38 0.97 -10.27 -0.01 1.37 16 8 C 0.11 2.14 4.66 86.12 0.40 2.54 16 9 N -0.63 -13.08 2.02 -836.26 -1.69 -14.77 16 10 C 0.71 20.30 6.10 179.05 1.09 21.40 16 11 O -0.62 -23.39 14.06 -3.99 -0.06 -23.44 16 12 N -0.72 -19.57 4.87 -478.55 -2.33 -21.90 16 13 C 0.16 5.71 4.57 86.38 0.39 6.11 16 14 C -0.06 -2.31 0.54 -52.18 -0.03 -2.34 16 15 C -0.12 -3.85 8.05 71.98 0.58 -3.27 16 16 C -0.12 -3.88 8.05 71.98 0.58 -3.30 16 17 C 0.04 1.97 4.04 29.85 0.12 2.09 16 18 C -0.51 -26.90 7.65 25.60 0.20 -26.71 16 19 H 0.07 3.63 5.68 -2.91 -0.02 3.61 16 20 C -0.01 -0.37 5.46 84.66 0.46 0.09 16 21 N -0.94 -56.96 13.29 21.45 0.28 -56.68 16 22 Si 0.96 43.20 29.54 68.60 2.03 45.22 16 23 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 24 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 25 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 26 C 0.07 0.91 6.56 86.35 0.57 1.47 16 27 C 0.04 0.47 6.70 72.08 0.48 0.96 16 28 O -0.36 -5.54 10.16 -148.98 -1.51 -7.05 16 29 H 0.07 1.87 4.53 -2.39 -0.01 1.86 16 30 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.06 1.91 5.15 -2.39 -0.01 1.90 16 32 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.11 1.03 8.07 -2.39 -0.02 1.01 16 35 H 0.10 1.11 7.84 -2.38 -0.02 1.09 16 36 H 0.09 2.28 4.99 -2.39 -0.01 2.27 16 37 H 0.09 1.45 8.14 -2.39 -0.02 1.44 16 38 H 0.41 8.38 3.71 -92.71 -0.34 8.04 16 39 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.07 1.62 6.86 -2.39 -0.02 1.61 16 42 H 0.06 1.97 6.62 -2.39 -0.02 1.95 16 43 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.06 1.99 6.62 -2.39 -0.02 1.98 16 46 H 0.07 1.62 6.86 -2.39 -0.02 1.60 16 47 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 48 H -0.01 -0.78 8.14 -2.38 -0.02 -0.80 16 49 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 50 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 51 H 0.10 1.05 5.76 -2.39 -0.01 1.04 16 52 H 0.14 0.79 8.14 -2.39 -0.02 0.77 16 53 H 0.05 0.71 6.58 -2.39 -0.02 0.69 16 Total: -1.00 -72.32 386.56 1.86 -70.46 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: 0.57 Total: 20.63 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: 6.24 Total: -1.93 kcal Atomic # 7 Polarization: -89.62 SS G_CDS: -3.73 Total: -93.35 kcal Atomic # 8 Polarization: -37.79 SS G_CDS: -3.24 Total: -41.03 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.22 kcal Total: -72.32 1.86 -70.46 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377028000.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.076 kcal (2) G-P(sol) polarization free energy of solvation -72.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds