Wall clock time and date at job start Wed Apr 1 2020 00:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.51232 * 2 1 4 4 C 1.53286 * 109.51160 * 120.09971 * 2 1 3 5 5 N 1.47160 * 108.52786 * 172.79615 * 4 2 1 6 6 C 1.34771 * 121.04801 * 128.93840 * 5 4 2 7 7 O 1.21586 * 120.00158 * 354.78106 * 6 5 4 8 8 N 1.34780 * 120.00314 * 174.78174 * 6 5 4 9 9 C 1.46490 * 120.00378 * 184.97062 * 8 6 5 10 10 C 1.53000 * 109.47375 * 180.02562 * 9 8 6 11 11 C 1.53004 * 109.47148 * 300.00567 * 10 9 8 12 12 C 1.53002 * 109.47158 * 59.99989 * 10 9 8 13 13 C 1.52999 * 109.47467 * 180.02562 * 10 9 8 14 14 C 1.50704 * 109.47189 * 180.02562 * 13 10 9 15 15 H 1.08000 * 119.99949 * 0.02562 * 14 13 10 16 16 C 1.37878 * 120.00225 * 180.02562 * 14 13 10 17 17 N 1.31520 * 119.99556 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00002 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47465 * 59.99982 * 18 16 14 20 20 H 1.48501 * 109.46728 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.47186 * 299.99255 * 18 16 14 22 22 C 1.47279 * 117.90038 * 308.95364 * 5 4 2 23 23 C 1.52655 * 108.39131 * 49.55254 * 22 5 4 24 24 C 1.53981 * 110.13870 * 71.78475 * 23 22 5 25 25 C 1.54613 * 103.87104 * 118.22878 * 24 23 22 26 26 O 1.44469 * 104.82048 * 23.89707 * 25 24 23 27 27 C 1.44553 * 105.37180 * 319.84273 * 26 25 24 28 28 O 1.42299 * 110.87035 * 309.29798 * 23 22 5 29 29 H 1.09007 * 109.47164 * 299.99961 * 1 2 3 30 30 H 1.09005 * 109.47266 * 60.00088 * 1 2 3 31 31 H 1.09002 * 109.47286 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.63255 * 292.50776 * 4 2 1 33 33 H 1.09005 * 109.62848 * 52.89035 * 4 2 1 34 34 H 0.97000 * 119.99601 * 4.97552 * 8 6 5 35 35 H 1.08998 * 109.47746 * 300.00435 * 9 8 6 36 36 H 1.09006 * 109.47279 * 60.00556 * 9 8 6 37 37 H 1.08997 * 109.47497 * 59.99087 * 11 10 9 38 38 H 1.08997 * 109.47235 * 180.02562 * 11 10 9 39 39 H 1.08997 * 109.46830 * 299.99443 * 11 10 9 40 40 H 1.09003 * 109.46867 * 60.00284 * 12 10 9 41 41 H 1.08994 * 109.47608 * 180.02562 * 12 10 9 42 42 H 1.09003 * 109.47016 * 300.00646 * 12 10 9 43 43 H 1.08996 * 109.47124 * 299.99782 * 13 10 9 44 44 H 1.08997 * 109.47159 * 60.00160 * 13 10 9 45 45 H 0.96994 * 119.99479 * 180.02562 * 17 16 14 46 46 H 1.09000 * 109.67727 * 169.27625 * 22 5 4 47 47 H 1.08997 * 109.68079 * 289.79342 * 22 5 4 48 48 H 1.08997 * 110.54972 * 236.82919 * 24 23 22 49 49 H 1.08997 * 110.54821 * 359.63959 * 24 23 22 50 50 H 1.08999 * 110.36842 * 142.72870 * 25 24 23 51 51 H 1.08993 * 110.37669 * 265.05973 * 25 24 23 52 52 H 1.09007 * 110.38895 * 281.17755 * 27 26 25 53 53 H 1.08998 * 110.39734 * 158.78603 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0419 -0.7246 1.2500 5 7 3.5029 -0.8651 1.1436 6 6 4.3133 -0.4804 2.1493 7 8 3.8491 0.0780 3.1245 8 7 5.6385 -0.7145 2.0742 9 6 6.5044 -0.3957 3.2120 10 6 7.9514 -0.7547 2.8681 11 6 8.0460 -2.2501 2.5584 12 6 8.3994 0.0486 1.6455 13 6 8.8556 -0.4224 4.0567 14 6 10.2810 -0.7754 3.7177 15 1 10.5182 -1.1945 2.7510 16 6 11.2822 -0.5634 4.6417 17 7 10.9933 -0.0526 5.8187 18 14 13.0489 -1.0004 4.2212 19 1 13.4835 -0.2188 3.0356 20 1 13.9265 -0.6779 5.3749 21 1 13.1414 -2.4512 3.9187 22 6 4.0515 -1.4393 -0.0968 23 6 3.4257 -0.7100 -1.2830 24 6 3.9899 0.7191 -1.3843 25 6 4.6919 0.7436 -2.7617 26 8 4.0397 -0.2934 -3.5274 27 6 3.8415 -1.3860 -2.6019 28 8 2.0079 -0.6764 -1.1667 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.7938 -0.1430 2.1379 33 1 1.5803 -1.7098 1.3170 34 1 6.0189 -1.0940 1.2666 35 1 6.4373 0.6697 3.4324 36 1 6.1850 -0.9678 4.0832 37 1 7.4017 -2.4873 1.7118 38 1 9.0769 -2.5059 2.3139 39 1 7.7269 -2.8224 3.4294 40 1 8.3320 1.1140 1.8661 41 1 9.4301 -0.2074 1.4002 42 1 7.7551 -0.1885 0.7989 43 1 8.7883 0.6428 4.2777 44 1 8.5363 -0.9950 4.9275 45 1 11.6977 0.0969 6.4685 46 1 5.1335 -1.3083 -0.1147 47 1 3.8093 -2.5007 -0.1485 48 1 3.1837 1.4519 -1.3527 49 1 4.7082 0.9044 -0.5857 50 1 4.5535 1.7128 -3.2408 51 1 5.7534 0.5225 -2.6507 52 1 4.7690 -1.9427 -2.4674 53 1 3.0496 -2.0455 -2.9567 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000377036247.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:24:12 Heat of formation + Delta-G solvation = -140.287846 kcal Electronic energy + Delta-G solvation = -31985.708180 eV Core-core repulsion = 27856.662584 eV Total energy + Delta-G solvation = -4129.045596 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.18025 -40.74380 -39.08959 -38.48228 -36.01600 -35.26768 -34.34323 -33.73628 -31.76336 -30.25322 -29.16632 -28.26518 -27.96630 -27.25008 -26.35540 -24.65982 -24.04385 -22.94534 -21.68248 -20.47122 -20.06501 -19.03289 -18.38710 -18.24012 -17.63559 -17.34246 -16.62000 -16.57725 -16.52407 -16.26729 -15.75999 -15.56342 -15.42936 -15.17034 -15.00258 -14.66239 -14.48871 -14.36230 -13.93656 -13.77014 -13.67073 -13.61056 -13.23238 -13.04575 -12.84039 -12.75057 -12.65069 -12.58944 -12.50239 -12.37820 -12.32888 -12.21833 -12.03604 -12.00361 -11.78626 -11.53864 -11.34444 -11.12245 -10.97865 -10.85853 -10.77232 -10.49611 -10.22985 -9.50089 -8.12953 -6.20766 1.41768 1.44442 1.45366 1.52612 2.01553 2.41032 2.44841 2.79205 2.92715 3.21696 3.39216 3.52401 3.71684 3.77475 3.91241 3.93830 4.01207 4.08364 4.14466 4.18383 4.23294 4.30177 4.39822 4.48280 4.53014 4.67386 4.68939 4.70172 4.72301 4.77179 4.78804 4.80564 4.88279 4.92586 4.95125 5.00416 5.09870 5.12393 5.20428 5.30479 5.37025 5.47082 5.51032 5.53769 5.58085 5.72055 5.78508 5.80934 5.90845 6.12957 6.31290 6.84164 6.94617 7.44367 7.47157 8.99439 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017016 B = 0.002691 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.140859 B =10403.956005 C =11492.706786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.075 3.925 3 H 0.056 0.944 4 C 0.100 3.900 5 N -0.628 5.628 6 C 0.704 3.296 7 O -0.632 6.632 8 N -0.722 5.722 9 C 0.161 3.839 10 C -0.064 4.064 11 C -0.120 4.120 12 C -0.120 4.120 13 C 0.041 3.959 14 C -0.513 4.513 15 H 0.074 0.926 16 C -0.005 4.005 17 N -0.939 5.939 18 Si 0.957 3.043 19 H -0.266 1.266 20 H -0.293 1.293 21 H -0.266 1.266 22 C 0.090 3.910 23 C 0.076 3.924 24 C -0.178 4.178 25 C 0.047 3.953 26 O -0.389 6.389 27 C 0.061 3.939 28 O -0.365 6.365 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.406 0.594 35 H 0.043 0.957 36 H 0.044 0.956 37 H 0.068 0.932 38 H 0.057 0.943 39 H 0.036 0.964 40 H 0.036 0.964 41 H 0.057 0.943 42 H 0.067 0.933 43 H -0.015 1.015 44 H -0.014 1.014 45 H 0.259 0.741 46 H 0.102 0.898 47 H 0.101 0.899 48 H 0.075 0.925 49 H 0.078 0.922 50 H 0.099 0.901 51 H 0.080 0.920 52 H 0.104 0.896 53 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.342 -3.564 -19.696 27.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.017 3.983 3 H 0.074 0.926 4 C -0.023 4.023 5 N -0.366 5.366 6 C 0.406 3.594 7 O -0.514 6.514 8 N -0.380 5.380 9 C 0.036 3.964 10 C -0.064 4.064 11 C -0.178 4.178 12 C -0.177 4.177 13 C 0.003 3.997 14 C -0.551 4.551 15 H 0.092 0.908 16 C -0.202 4.202 17 N -0.580 5.580 18 Si 0.783 3.217 19 H -0.191 1.191 20 H -0.219 1.219 21 H -0.191 1.191 22 C -0.033 4.033 23 C 0.035 3.965 24 C -0.216 4.216 25 C -0.030 4.030 26 O -0.308 6.308 27 C -0.016 4.016 28 O -0.285 6.285 29 H 0.104 0.896 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.246 0.754 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.076 0.924 42 H 0.086 0.914 43 H 0.004 0.996 44 H 0.004 0.996 45 H 0.068 0.932 46 H 0.120 0.880 47 H 0.119 0.881 48 H 0.094 0.906 49 H 0.097 0.903 50 H 0.117 0.883 51 H 0.098 0.902 52 H 0.122 0.878 53 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -18.760 -3.204 -19.180 27.020 hybrid contribution 1.412 0.239 0.913 1.698 sum -17.348 -2.965 -18.267 25.366 Atomic orbital electron populations 1.21717 0.90254 1.03942 1.03611 1.22570 0.96788 0.95001 0.83951 0.92640 1.22281 0.78114 1.02345 0.99595 1.47270 1.06634 1.66517 1.16170 1.15976 0.81748 0.79005 0.82698 1.90889 1.75909 1.49785 1.34796 1.45164 1.04954 1.68434 1.19491 1.21093 0.89029 0.98991 0.87298 1.20713 0.91386 0.96987 0.97324 1.21684 1.01986 0.93679 1.00409 1.21678 1.01548 0.98597 0.95882 1.18954 0.94059 0.94345 0.92319 1.21563 0.92617 1.40385 1.00551 0.90786 1.25943 1.03603 0.95605 0.95022 1.70119 1.34245 1.46380 1.07273 0.85612 0.79449 0.79113 0.77549 1.19111 1.21879 1.19096 1.22412 0.99478 0.99201 0.82165 1.22835 0.82358 0.95137 0.96206 1.23492 1.01428 0.97367 0.99275 1.23523 0.96902 0.92734 0.89820 1.89180 1.80288 1.27037 1.34299 1.23459 1.02725 0.89933 0.85473 1.87920 1.19562 1.77514 1.43463 0.89595 0.91110 0.90817 0.89453 0.89529 0.75384 0.93842 0.93794 0.91327 0.92382 0.94462 0.94472 0.92360 0.91393 0.99619 0.99587 0.93209 0.87950 0.88139 0.90596 0.90301 0.88272 0.90211 0.87778 0.87122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.57 71.98 0.69 -0.97 16 2 C 0.08 1.25 3.11 30.69 0.10 1.35 16 3 H 0.06 1.04 6.51 -2.39 -0.02 1.03 16 4 C 0.10 1.93 5.93 86.35 0.51 2.44 16 5 N -0.63 -13.46 2.91 -836.25 -2.43 -15.89 16 6 C 0.70 20.82 8.31 179.06 1.49 22.30 16 7 O -0.63 -24.65 15.82 -3.99 -0.06 -24.71 16 8 N -0.72 -19.57 4.87 -478.55 -2.33 -21.90 16 9 C 0.16 5.64 4.57 86.38 0.39 6.04 16 10 C -0.06 -2.31 0.54 -52.18 -0.03 -2.34 16 11 C -0.12 -3.83 8.05 71.98 0.58 -3.25 16 12 C -0.12 -3.80 8.05 71.98 0.58 -3.22 16 13 C 0.04 2.04 4.04 29.85 0.12 2.16 16 14 C -0.51 -26.87 7.65 25.60 0.20 -26.68 16 15 H 0.07 3.59 5.68 -2.91 -0.02 3.57 16 16 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 17 N -0.94 -56.64 13.29 21.45 0.28 -56.35 16 18 Si 0.96 42.86 29.54 68.60 2.03 44.89 16 19 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 20 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 21 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 22 C 0.09 1.31 4.89 86.12 0.42 1.73 16 23 C 0.08 1.13 1.05 -10.26 -0.01 1.12 16 24 C -0.18 -2.84 5.77 31.47 0.18 -2.65 16 25 C 0.05 0.66 7.65 72.53 0.55 1.22 16 26 O -0.39 -6.90 11.65 -148.98 -1.74 -8.63 16 27 C 0.06 0.78 6.93 72.29 0.50 1.28 16 28 O -0.37 -6.43 9.84 -148.98 -1.47 -7.89 16 29 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 30 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 31 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.09 2.02 7.06 -2.39 -0.02 2.00 16 33 H 0.09 1.44 8.14 -2.38 -0.02 1.43 16 34 H 0.41 8.40 3.74 -92.71 -0.35 8.06 16 35 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 37 H 0.07 1.60 6.86 -2.39 -0.02 1.58 16 38 H 0.06 1.98 6.62 -2.39 -0.02 1.96 16 39 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.06 1.98 6.62 -2.39 -0.02 1.96 16 42 H 0.07 1.56 6.86 -2.39 -0.02 1.55 16 43 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 44 H -0.01 -0.80 8.14 -2.39 -0.02 -0.81 16 45 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 46 H 0.10 1.21 5.73 -2.39 -0.01 1.19 16 47 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 48 H 0.08 1.36 6.63 -2.39 -0.02 1.34 16 49 H 0.08 1.36 7.67 -2.39 -0.02 1.34 16 50 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 51 H 0.08 0.91 8.14 -2.39 -0.02 0.90 16 52 H 0.10 0.81 7.84 -2.38 -0.02 0.79 16 53 H 0.11 1.31 8.08 -2.39 -0.02 1.29 16 Total: -1.00 -72.04 400.83 1.57 -70.46 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: 0.55 Total: 19.30 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: 6.74 Total: 0.73 kcal Atomic # 7 Polarization: -89.67 SS G_CDS: -4.47 Total: -94.14 kcal Atomic # 8 Polarization: -37.97 SS G_CDS: -3.27 Total: -41.24 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -72.04 1.57 -70.46 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377036247.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.825 kcal (2) G-P(sol) polarization free energy of solvation -72.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds