Wall clock time and date at job start Wed Apr 1 2020 00:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09007 * 109.55039 * 2 1 4 4 C 1.52856 * 109.58089 * 240.01371 * 2 1 3 5 5 N 1.47169 * 108.76122 * 187.09883 * 4 2 1 6 6 C 1.34775 * 121.08369 * 231.30653 * 5 4 2 7 7 O 1.21591 * 119.99931 * 184.71193 * 6 5 4 8 8 N 1.34769 * 120.00198 * 4.71095 * 6 5 4 9 9 C 1.46505 * 120.00541 * 174.92306 * 8 6 5 10 10 C 1.52997 * 109.47279 * 179.97438 * 9 8 6 11 11 C 1.53001 * 109.46996 * 299.99819 * 10 9 8 12 12 C 1.53004 * 109.47254 * 59.99654 * 10 9 8 13 13 C 1.53004 * 109.46887 * 179.97438 * 10 9 8 14 14 C 1.50697 * 109.46837 * 179.97438 * 13 10 9 15 15 H 1.08001 * 120.00224 * 0.02562 * 14 13 10 16 16 C 1.37877 * 119.99873 * 179.97438 * 14 13 10 17 17 N 1.31516 * 119.99833 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00215 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47250 * 90.00114 * 18 16 14 20 20 H 1.48504 * 109.47369 * 210.00270 * 18 16 14 21 21 H 1.48504 * 109.46953 * 330.00404 * 18 16 14 22 22 C 1.47334 * 117.83344 * 51.03209 * 5 4 2 23 23 C 1.52287 * 108.47595 * 311.22354 * 22 5 4 24 24 C 1.54446 * 110.47628 * 285.89081 * 23 22 5 25 25 C 1.54526 * 102.17677 * 209.19696 * 24 23 22 26 26 O 1.43306 * 107.61285 * 20.64723 * 25 24 23 27 27 C 1.43808 * 110.00775 * 1.60288 * 26 25 24 28 28 O 1.41802 * 111.63479 * 49.69673 * 23 22 5 29 29 H 1.08998 * 109.46907 * 299.86875 * 1 2 3 30 30 H 1.08998 * 109.47340 * 59.87267 * 1 2 3 31 31 H 1.09001 * 109.46576 * 179.87514 * 1 2 3 32 32 H 1.08998 * 109.56250 * 67.29529 * 4 2 1 33 33 H 1.09001 * 109.46951 * 306.85781 * 4 2 1 34 34 H 0.97004 * 120.00218 * 354.91510 * 8 6 5 35 35 H 1.09000 * 109.46955 * 59.99739 * 9 8 6 36 36 H 1.09004 * 109.46531 * 299.99715 * 9 8 6 37 37 H 1.09002 * 109.46634 * 180.02562 * 11 10 9 38 38 H 1.08993 * 109.47498 * 59.99884 * 11 10 9 39 39 H 1.09004 * 109.46948 * 299.99866 * 11 10 9 40 40 H 1.08993 * 109.46908 * 299.99913 * 12 10 9 41 41 H 1.08996 * 109.46909 * 59.99769 * 12 10 9 42 42 H 1.09002 * 109.47258 * 179.97438 * 12 10 9 43 43 H 1.09004 * 109.46929 * 299.99835 * 13 10 9 44 44 H 1.09000 * 109.46949 * 60.00099 * 13 10 9 45 45 H 0.97006 * 120.00093 * 179.97438 * 17 16 14 46 46 H 1.09008 * 109.63685 * 70.92517 * 22 5 4 47 47 H 1.08998 * 109.63767 * 191.32223 * 22 5 4 48 48 H 1.09002 * 110.86181 * 327.37053 * 24 23 22 49 49 H 1.08997 * 110.86257 * 91.02089 * 24 23 22 50 50 H 1.09003 * 109.82722 * 261.12907 * 25 24 23 51 51 H 1.09004 * 109.89838 * 140.20735 * 25 24 23 52 52 H 1.09001 * 110.31918 * 217.56787 * 27 26 25 53 53 H 1.09007 * 110.31708 * 95.37666 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8948 1.0272 0.0000 4 6 2.0423 -0.7198 -1.2474 5 7 3.5038 -0.8602 -1.1462 6 6 4.3117 -0.4691 -2.1516 7 8 5.5086 -0.6722 -2.0837 8 7 3.7930 0.1471 -3.2321 9 6 4.6806 0.6714 -4.2730 10 6 3.8438 1.3168 -5.3793 11 6 2.9076 0.2702 -5.9870 12 6 3.0159 2.4611 -4.7909 13 6 4.7709 1.8650 -6.4661 14 6 3.9466 2.5001 -7.5561 15 1 2.8692 2.5120 -7.4810 16 6 4.5678 3.0669 -8.6487 17 7 5.8798 3.0528 -8.7398 18 14 3.5462 3.8549 -9.9995 19 1 3.3352 5.2911 -9.6867 20 1 4.2593 3.7302 -11.2961 21 1 2.2317 3.1697 -10.0895 22 6 4.0554 -1.4366 0.0925 23 6 3.4208 -0.7252 1.2801 24 6 4.0079 0.6948 1.4361 25 6 3.8849 0.9329 2.9579 26 8 3.7699 -0.3483 3.5894 27 6 3.8463 -1.3918 2.6028 28 8 2.0081 -0.6770 1.1668 29 1 -0.3633 0.5118 0.8912 30 1 -0.3634 0.5158 -0.8888 31 1 -0.3632 -1.0277 -0.0022 32 1 1.7911 -0.1374 -2.1338 33 1 1.5833 -1.7063 -1.3118 34 1 2.8318 0.2433 -3.3207 35 1 5.2700 -0.1439 -4.6925 36 1 5.3478 1.4167 -3.8399 37 1 2.3118 0.7300 -6.7755 38 1 2.2472 -0.1199 -5.2127 39 1 3.4974 -0.5450 -6.4063 40 1 2.3555 2.0710 -4.0166 41 1 3.6828 3.2067 -4.3580 42 1 2.4201 2.9213 -5.5792 43 1 5.4375 2.6107 -6.0328 44 1 5.3609 1.0499 -6.8853 45 1 6.3169 3.4513 -9.5086 46 1 3.8235 -2.5008 0.1363 47 1 5.1361 -1.2962 0.1123 48 1 5.0515 0.7199 1.1223 49 1 3.4167 1.4225 0.8802 50 1 2.9974 1.5298 3.1682 51 1 4.7724 1.4480 3.3257 52 1 3.1626 -2.2023 2.8554 53 1 4.8671 -1.7666 2.5266 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000377036249.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:24:20 Heat of formation + Delta-G solvation = -139.162322 kcal Electronic energy + Delta-G solvation = -31793.446349 eV Core-core repulsion = 27664.449560 eV Total energy + Delta-G solvation = -4128.996790 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.18956 -40.81690 -39.02231 -38.55549 -35.91423 -35.33403 -34.42633 -33.73590 -31.82084 -30.51812 -29.11686 -28.04440 -27.96915 -27.63968 -26.28991 -24.61517 -23.89121 -22.94405 -21.70889 -20.57135 -20.12831 -19.00516 -18.49823 -18.35430 -17.57048 -17.29732 -16.73601 -16.50188 -16.47835 -16.16384 -15.91668 -15.54059 -15.39334 -15.31388 -14.84103 -14.68706 -14.51528 -14.38106 -14.02362 -13.94181 -13.75369 -13.50616 -13.20485 -13.07219 -12.87409 -12.73483 -12.71871 -12.59976 -12.54267 -12.43213 -12.34185 -12.22322 -12.02732 -11.98749 -11.80272 -11.54433 -11.31719 -11.11025 -10.97944 -10.85050 -10.56378 -10.50715 -10.22003 -9.51076 -8.13375 -6.21101 1.40656 1.43434 1.44035 1.53886 2.02677 2.32524 2.44472 2.79222 2.85337 3.21400 3.27490 3.52408 3.68715 3.75887 3.89128 3.92944 4.02788 4.08089 4.11302 4.18395 4.23753 4.30103 4.38191 4.50586 4.55151 4.63940 4.65252 4.68559 4.71961 4.76020 4.77307 4.80395 4.88183 4.95031 4.96711 5.03377 5.09544 5.12047 5.23324 5.32772 5.37050 5.47028 5.50655 5.53473 5.57883 5.76745 5.80607 5.90102 5.90593 6.11866 6.31032 6.84982 6.94487 7.44628 7.46875 8.99199 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.021239 B = 0.002400 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.008177 B =11663.578861 C =12063.579657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.070 3.930 3 H 0.063 0.937 4 C 0.078 3.922 5 N -0.629 5.629 6 C 0.705 3.295 7 O -0.632 6.632 8 N -0.723 5.723 9 C 0.161 3.839 10 C -0.063 4.063 11 C -0.121 4.121 12 C -0.120 4.120 13 C 0.040 3.960 14 C -0.512 4.512 15 H 0.074 0.926 16 C -0.006 4.006 17 N -0.939 5.939 18 Si 0.958 3.042 19 H -0.276 1.276 20 H -0.291 1.291 21 H -0.258 1.258 22 C 0.115 3.885 23 C 0.078 3.922 24 C -0.177 4.177 25 C 0.058 3.942 26 O -0.397 6.397 27 C 0.070 3.930 28 O -0.361 6.361 29 H 0.067 0.933 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.102 0.898 33 H 0.094 0.906 34 H 0.407 0.593 35 H 0.043 0.957 36 H 0.044 0.956 37 H 0.057 0.943 38 H 0.067 0.933 39 H 0.035 0.965 40 H 0.068 0.932 41 H 0.037 0.963 42 H 0.057 0.943 43 H -0.014 1.014 44 H -0.015 1.015 45 H 0.259 0.741 46 H 0.089 0.911 47 H 0.091 0.909 48 H 0.081 0.919 49 H 0.085 0.915 50 H 0.074 0.926 51 H 0.079 0.921 52 H 0.107 0.893 53 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.165 -8.055 22.377 27.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.012 3.988 3 H 0.081 0.919 4 C -0.045 4.045 5 N -0.367 5.367 6 C 0.406 3.594 7 O -0.513 6.513 8 N -0.381 5.381 9 C 0.036 3.964 10 C -0.064 4.064 11 C -0.178 4.178 12 C -0.177 4.177 13 C 0.002 3.998 14 C -0.550 4.550 15 H 0.092 0.908 16 C -0.202 4.202 17 N -0.580 5.580 18 Si 0.783 3.217 19 H -0.202 1.202 20 H -0.217 1.217 21 H -0.182 1.182 22 C -0.008 4.008 23 C 0.037 3.963 24 C -0.215 4.215 25 C -0.018 4.018 26 O -0.317 6.317 27 C -0.007 4.007 28 O -0.280 6.280 29 H 0.086 0.914 30 H 0.113 0.887 31 H 0.091 0.909 32 H 0.120 0.880 33 H 0.112 0.888 34 H 0.247 0.753 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.055 0.945 40 H 0.087 0.913 41 H 0.056 0.944 42 H 0.076 0.924 43 H 0.005 0.995 44 H 0.004 0.996 45 H 0.068 0.932 46 H 0.108 0.892 47 H 0.110 0.890 48 H 0.100 0.900 49 H 0.104 0.896 50 H 0.092 0.908 51 H 0.097 0.903 52 H 0.125 0.875 53 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.327 -8.240 22.647 27.069 hybrid contribution 0.277 0.827 -1.624 1.844 sum -12.050 -7.413 21.023 25.340 Atomic orbital electron populations 1.21750 0.89893 1.04009 1.03996 1.22619 0.96983 0.95256 0.83931 0.91936 1.22553 0.78805 1.03221 0.99925 1.47269 1.06755 1.66430 1.16208 1.15959 0.84549 0.78325 0.80553 1.90892 1.15562 1.63543 1.81316 1.45175 1.10769 1.61335 1.20831 1.21092 0.91839 0.96466 0.86989 1.20708 0.96087 0.95984 0.93602 1.21684 0.98466 0.97172 1.00459 1.21679 0.99034 0.96949 1.00042 1.18967 0.93929 0.94048 0.92819 1.21585 0.93853 1.35310 1.04220 0.90785 1.25947 0.95825 0.97326 1.01133 1.70125 1.09964 1.46926 1.31022 0.85553 0.79078 0.78891 0.78168 1.20177 1.21740 1.18234 1.21862 0.99755 0.97980 0.81222 1.22707 0.82646 0.95072 0.95899 1.23578 1.02611 0.97825 0.97451 1.23146 1.02186 0.85694 0.90805 1.88420 1.95120 1.15269 1.32897 1.23355 1.02387 0.91066 0.83861 1.87816 1.18802 1.77641 1.43763 0.91395 0.88685 0.90940 0.88035 0.88796 0.75303 0.93895 0.93757 0.92377 0.91379 0.94529 0.91348 0.94426 0.92371 0.99542 0.99614 0.93214 0.89249 0.89025 0.90048 0.89636 0.90773 0.90327 0.87488 0.88785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.57 71.98 0.69 -0.54 16 2 C 0.07 0.94 3.19 30.55 0.10 1.04 16 3 H 0.06 0.91 6.28 -2.38 -0.01 0.90 16 4 C 0.08 1.09 5.88 86.20 0.51 1.60 16 5 N -0.63 -13.25 2.97 -837.62 -2.49 -15.73 16 6 C 0.70 20.65 8.32 179.06 1.49 22.14 16 7 O -0.63 -24.32 15.87 -4.00 -0.06 -24.38 16 8 N -0.72 -19.59 4.88 -478.53 -2.33 -21.93 16 9 C 0.16 5.65 4.57 86.38 0.39 6.04 16 10 C -0.06 -2.30 0.54 -52.18 -0.03 -2.33 16 11 C -0.12 -3.87 8.05 71.98 0.58 -3.29 16 12 C -0.12 -3.78 8.05 71.98 0.58 -3.20 16 13 C 0.04 1.99 4.04 29.85 0.12 2.11 16 14 C -0.51 -26.79 7.65 25.60 0.20 -26.59 16 15 H 0.07 3.59 5.68 -2.91 -0.02 3.58 16 16 C -0.01 -0.30 5.46 84.65 0.46 0.16 16 17 N -0.94 -56.62 13.29 21.45 0.28 -56.34 16 18 Si 0.96 42.86 29.54 68.60 2.03 44.88 16 19 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 20 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 21 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 22 C 0.12 2.18 5.28 85.98 0.45 2.64 16 23 C 0.08 1.31 0.86 -10.16 -0.01 1.30 16 24 C -0.18 -3.10 5.97 31.60 0.19 -2.91 16 25 C 0.06 0.97 7.81 72.50 0.57 1.54 16 26 O -0.40 -7.89 11.37 -148.98 -1.69 -9.59 16 27 C 0.07 1.08 6.98 72.36 0.50 1.58 16 28 O -0.36 -6.12 9.93 -148.93 -1.48 -7.60 16 29 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.10 1.16 5.66 -2.39 -0.01 1.15 16 33 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.41 8.44 3.68 -92.71 -0.34 8.10 16 35 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 37 H 0.06 2.00 6.62 -2.39 -0.02 1.98 16 38 H 0.07 1.61 6.86 -2.39 -0.02 1.60 16 39 H 0.04 1.25 8.14 -2.38 -0.02 1.23 16 40 H 0.07 1.57 6.86 -2.39 -0.02 1.55 16 41 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.06 1.97 6.62 -2.39 -0.02 1.95 16 43 H -0.01 -0.77 8.14 -2.38 -0.02 -0.79 16 44 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 45 H 0.26 14.86 8.31 -92.70 -0.77 14.09 16 46 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 47 H 0.09 2.05 6.89 -2.39 -0.02 2.03 16 48 H 0.08 1.57 7.81 -2.39 -0.02 1.55 16 49 H 0.09 1.52 6.13 -2.39 -0.01 1.50 16 50 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 51 H 0.08 1.16 8.14 -2.38 -0.02 1.15 16 52 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 53 H 0.09 1.18 7.98 -2.38 -0.02 1.16 16 Total: -1.00 -71.58 400.71 1.61 -69.97 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: 0.56 Total: 19.43 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: 6.79 Total: 1.28 kcal Atomic # 7 Polarization: -89.46 SS G_CDS: -4.54 Total: -94.00 kcal Atomic # 8 Polarization: -38.33 SS G_CDS: -3.23 Total: -41.56 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.88 kcal Total: -71.58 1.61 -69.97 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377036249.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.192 kcal (2) G-P(sol) polarization free energy of solvation -71.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds