Wall clock time and date at job start Wed Apr 1 2020 00:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.55482 * 2 1 4 4 C 1.53287 * 109.50906 * 120.11685 * 2 1 3 5 5 N 1.47174 * 108.57561 * 172.95973 * 4 2 1 6 6 C 1.34773 * 121.08201 * 128.75285 * 5 4 2 7 7 O 1.21588 * 120.00013 * 175.00070 * 6 5 4 8 8 N 1.34780 * 120.00046 * 355.00181 * 6 5 4 9 9 C 1.46499 * 119.99872 * 185.07168 * 8 6 5 10 10 C 1.52994 * 109.47221 * 179.97438 * 9 8 6 11 11 C 1.53001 * 109.47346 * 300.00641 * 10 9 8 12 12 C 1.53005 * 109.46926 * 60.00651 * 10 9 8 13 13 C 1.52998 * 109.47647 * 180.02562 * 10 9 8 14 14 C 1.50697 * 109.47555 * 180.02562 * 13 10 9 15 15 H 1.08002 * 119.99883 * 0.02562 * 14 13 10 16 16 C 1.37878 * 120.00166 * 179.97438 * 14 13 10 17 17 N 1.31515 * 119.99861 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00075 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47000 * 60.00567 * 18 16 14 20 20 H 1.48498 * 109.46946 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47058 * 300.00183 * 18 16 14 22 22 C 1.47345 * 117.83230 * 308.73810 * 5 4 2 23 23 C 1.52293 * 108.41073 * 49.08700 * 22 5 4 24 24 C 1.54452 * 110.47839 * 186.29515 * 23 22 5 25 25 C 1.54527 * 102.16964 * 209.16954 * 24 23 22 26 26 O 1.43309 * 107.61353 * 20.63847 * 25 24 23 27 27 C 1.43816 * 110.01059 * 1.60906 * 26 25 24 28 28 O 1.41812 * 111.59792 * 310.07866 * 23 22 5 29 29 H 1.08989 * 109.47845 * 299.88214 * 1 2 3 30 30 H 1.09005 * 109.47278 * 59.88531 * 1 2 3 31 31 H 1.09005 * 109.47400 * 179.87478 * 1 2 3 32 32 H 1.09000 * 109.61828 * 53.23707 * 4 2 1 33 33 H 1.09001 * 109.62049 * 292.69181 * 4 2 1 34 34 H 0.96992 * 119.99907 * 5.08094 * 8 6 5 35 35 H 1.08995 * 109.47781 * 300.00889 * 9 8 6 36 36 H 1.09009 * 109.46983 * 60.00274 * 9 8 6 37 37 H 1.09000 * 109.47001 * 59.99679 * 11 10 9 38 38 H 1.09008 * 109.46816 * 179.97438 * 11 10 9 39 39 H 1.08996 * 109.47035 * 299.99288 * 11 10 9 40 40 H 1.08993 * 109.47225 * 59.99469 * 12 10 9 41 41 H 1.09003 * 109.47320 * 180.02562 * 12 10 9 42 42 H 1.09004 * 109.46552 * 299.99980 * 12 10 9 43 43 H 1.09006 * 109.47024 * 300.00687 * 13 10 9 44 44 H 1.09004 * 109.46657 * 59.99765 * 13 10 9 45 45 H 0.96993 * 120.00244 * 179.97438 * 17 16 14 46 46 H 1.08999 * 109.68024 * 168.82435 * 22 5 4 47 47 H 1.09001 * 109.67098 * 289.32543 * 22 5 4 48 48 H 1.09003 * 110.86170 * 327.33745 * 24 23 22 49 49 H 1.08995 * 110.86154 * 90.99826 * 24 23 22 50 50 H 1.08998 * 109.82848 * 261.12297 * 25 24 23 51 51 H 1.08998 * 109.89991 * 140.19739 * 25 24 23 52 52 H 1.08997 * 110.32286 * 217.56781 * 27 26 25 53 53 H 1.08998 * 110.31845 * 95.37195 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8948 1.0271 0.0000 4 6 2.0418 -0.7250 1.2498 5 7 3.5035 -0.8626 1.1463 6 6 4.3119 -0.4742 2.1523 7 8 5.5083 -0.6798 2.0846 8 7 3.7940 0.1420 3.2334 9 6 4.6825 0.6632 4.2750 10 6 3.8469 1.3104 5.3812 11 6 3.0226 2.4574 4.7929 12 6 2.9075 0.2661 5.9879 13 6 4.7748 1.8554 6.4688 14 6 3.9516 2.4923 7.5587 15 1 2.8743 2.5066 7.4833 16 6 4.5737 3.0559 8.6524 17 7 5.8855 3.0381 8.7444 18 14 3.5534 3.8461 10.0030 19 1 2.6416 2.8325 10.5917 20 1 4.4541 4.3749 11.0586 21 1 2.7536 4.9594 9.4320 22 6 4.0541 -1.4392 -0.0928 23 6 3.4210 -0.7239 -1.2789 24 6 3.8448 -1.3952 -2.6038 25 6 3.7963 -0.2132 -3.5979 26 8 3.8761 0.9979 -2.8360 27 6 4.0096 0.6914 -1.4372 28 8 2.0081 -0.6772 -1.1667 29 1 -0.3634 0.5119 0.8909 30 1 -0.3634 0.5156 -0.8890 31 1 -0.3634 -1.0277 -0.0022 32 1 1.5848 -1.7125 1.3130 33 1 1.7907 -0.1451 2.1380 34 1 2.8332 0.2401 3.3217 35 1 5.2701 -0.1537 4.6938 36 1 5.3515 1.4075 3.8429 37 1 2.3616 2.0694 4.0179 38 1 2.4270 2.9181 5.5810 39 1 3.6918 3.2013 4.3608 40 1 3.4947 -0.5509 6.4069 41 1 2.3118 0.7273 6.7757 42 1 2.2465 -0.1217 5.2128 43 1 5.3623 1.0385 6.8880 44 1 5.4438 2.5994 6.0363 45 1 6.3233 3.4349 9.5136 46 1 5.1349 -1.2993 -0.1141 47 1 3.8208 -2.5029 -0.1378 48 1 4.8548 -1.7983 -2.5290 49 1 3.1357 -2.1721 -2.8895 50 1 2.8604 -0.2377 -4.1561 51 1 4.6391 -0.2728 -4.2866 52 1 3.4451 1.4054 -0.8376 53 1 5.0602 0.6991 -1.1467 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000377036250.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:24:24 Heat of formation + Delta-G solvation = -139.567457 kcal Electronic energy + Delta-G solvation = -31801.572999 eV Core-core repulsion = 27672.558641 eV Total energy + Delta-G solvation = -4129.014358 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.19636 -40.82510 -39.00057 -38.54016 -35.92268 -35.34134 -34.52024 -33.77263 -31.72540 -30.41425 -29.10475 -28.05301 -27.96780 -27.65133 -26.37756 -24.69391 -23.98795 -22.67710 -21.74470 -20.64320 -20.13546 -19.00367 -18.52023 -18.35141 -17.58321 -17.30947 -16.72764 -16.50375 -16.49404 -16.23957 -15.79311 -15.53873 -15.45672 -15.31205 -14.76941 -14.63593 -14.53739 -14.37750 -14.07007 -13.93664 -13.74846 -13.48410 -13.20510 -13.06172 -12.83986 -12.75105 -12.67633 -12.59081 -12.55733 -12.35988 -12.33012 -12.22108 -12.22017 -12.01281 -11.81161 -11.54109 -11.31859 -11.12944 -10.97841 -10.85707 -10.53966 -10.49697 -10.21827 -9.51424 -8.12911 -6.20779 1.40554 1.43971 1.45384 1.52606 2.01893 2.39110 2.44819 2.75974 2.79924 3.21608 3.28656 3.52810 3.56798 3.79413 3.89076 3.96343 4.01247 4.08332 4.15643 4.20356 4.25548 4.27477 4.35698 4.43667 4.55320 4.58255 4.67529 4.69573 4.72472 4.76341 4.80684 4.85497 4.90824 4.95121 5.00305 5.05767 5.09572 5.12149 5.23406 5.32086 5.37006 5.46896 5.50670 5.53401 5.57894 5.76150 5.80686 5.87458 5.90664 6.11511 6.31210 6.84367 6.94478 7.44015 7.47043 8.99484 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.021063 B = 0.002411 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.022221 B =11612.793451 C =12000.977125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.068 3.932 3 H 0.058 0.942 4 C 0.079 3.921 5 N -0.632 5.632 6 C 0.704 3.296 7 O -0.631 6.631 8 N -0.723 5.723 9 C 0.161 3.839 10 C -0.063 4.063 11 C -0.120 4.120 12 C -0.120 4.120 13 C 0.040 3.960 14 C -0.513 4.513 15 H 0.074 0.926 16 C -0.006 4.006 17 N -0.939 5.939 18 Si 0.958 3.042 19 H -0.266 1.266 20 H -0.293 1.293 21 H -0.266 1.266 22 C 0.116 3.884 23 C 0.079 3.921 24 C -0.132 4.132 25 C 0.047 3.953 26 O -0.403 6.403 27 C 0.032 3.968 28 O -0.359 6.359 29 H 0.094 0.906 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.407 0.593 35 H 0.044 0.956 36 H 0.043 0.957 37 H 0.067 0.933 38 H 0.057 0.943 39 H 0.036 0.964 40 H 0.036 0.964 41 H 0.057 0.943 42 H 0.068 0.932 43 H -0.014 1.014 44 H -0.014 1.014 45 H 0.259 0.741 46 H 0.091 0.909 47 H 0.094 0.906 48 H 0.110 0.890 49 H 0.113 0.887 50 H 0.078 0.922 51 H 0.085 0.915 52 H 0.077 0.923 53 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.403 -10.563 -23.671 29.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.010 3.990 3 H 0.076 0.924 4 C -0.044 4.044 5 N -0.370 5.370 6 C 0.405 3.595 7 O -0.513 6.513 8 N -0.381 5.381 9 C 0.036 3.964 10 C -0.064 4.064 11 C -0.177 4.177 12 C -0.178 4.178 13 C 0.002 3.998 14 C -0.551 4.551 15 H 0.092 0.908 16 C -0.202 4.202 17 N -0.580 5.580 18 Si 0.783 3.217 19 H -0.191 1.191 20 H -0.219 1.219 21 H -0.191 1.191 22 C -0.007 4.007 23 C 0.037 3.963 24 C -0.169 4.169 25 C -0.029 4.029 26 O -0.323 6.323 27 C -0.045 4.045 28 O -0.278 6.278 29 H 0.113 0.887 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.115 0.885 33 H 0.119 0.881 34 H 0.247 0.753 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.077 0.923 42 H 0.086 0.914 43 H 0.004 0.996 44 H 0.004 0.996 45 H 0.068 0.932 46 H 0.109 0.891 47 H 0.112 0.888 48 H 0.128 0.872 49 H 0.132 0.868 50 H 0.096 0.904 51 H 0.103 0.897 52 H 0.096 0.904 53 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.543 -10.515 -23.813 28.895 hybrid contribution 0.259 0.670 1.466 1.633 sum -12.283 -9.845 -22.347 27.335 Atomic orbital electron populations 1.21737 0.89731 1.04105 1.03965 1.22702 0.97178 0.95039 0.84064 0.92444 1.22641 0.78731 1.03262 0.99756 1.47348 1.06836 1.66562 1.16262 1.15980 0.84572 0.78354 0.80566 1.90891 1.15584 1.63474 1.81316 1.45179 1.10798 1.61371 1.20777 1.21094 0.91833 0.96514 0.86977 1.20705 0.96098 0.95966 0.93596 1.21684 0.99053 0.96963 1.00042 1.21684 0.98432 0.97174 1.00473 1.18966 0.93929 0.94062 0.92812 1.21553 0.93847 1.35489 1.04184 0.90800 1.25952 0.95831 0.97314 1.01138 1.70116 1.09948 1.46975 1.30983 0.85602 0.78418 0.79087 0.78550 1.19080 1.21863 1.19118 1.21920 0.99755 0.98149 0.80921 1.22697 0.82677 0.94540 0.96349 1.23080 1.04436 0.98954 0.90452 1.23356 1.02824 0.82501 0.94234 1.88428 1.95159 1.31189 1.17542 1.23814 1.00473 0.97115 0.83102 1.87806 1.18731 1.77416 1.43808 0.88721 0.91519 0.90651 0.88485 0.88054 0.75292 0.93785 0.93840 0.91376 0.92349 0.94502 0.94479 0.92349 0.91365 0.99577 0.99581 0.93203 0.89087 0.88806 0.87171 0.86847 0.90354 0.89697 0.90439 0.91910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.57 71.98 0.69 -0.60 16 2 C 0.07 0.98 3.21 30.69 0.10 1.08 16 3 H 0.06 0.97 6.28 -2.39 -0.02 0.95 16 4 C 0.08 1.14 5.90 86.35 0.51 1.64 16 5 N -0.63 -13.59 2.97 -836.73 -2.48 -16.07 16 6 C 0.70 21.01 8.32 179.05 1.49 22.50 16 7 O -0.63 -24.59 15.87 -3.99 -0.06 -24.65 16 8 N -0.72 -20.02 4.88 -478.54 -2.33 -22.36 16 9 C 0.16 5.72 4.57 86.38 0.39 6.12 16 10 C -0.06 -2.33 0.54 -52.18 -0.03 -2.36 16 11 C -0.12 -3.89 8.05 71.98 0.58 -3.31 16 12 C -0.12 -3.90 8.05 71.98 0.58 -3.32 16 13 C 0.04 2.01 4.04 29.85 0.12 2.13 16 14 C -0.51 -27.05 7.65 25.60 0.20 -26.86 16 15 H 0.07 3.61 5.68 -2.91 -0.02 3.59 16 16 C -0.01 -0.31 5.46 84.65 0.46 0.16 16 17 N -0.94 -56.94 13.29 21.45 0.28 -56.65 16 18 Si 0.96 43.11 29.54 68.60 2.03 45.14 16 19 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 20 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 21 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 22 C 0.12 2.20 5.28 85.98 0.45 2.65 16 23 C 0.08 1.34 0.85 -10.16 -0.01 1.33 16 24 C -0.13 -1.57 6.20 31.61 0.20 -1.37 16 25 C 0.05 0.69 7.81 72.50 0.57 1.25 16 26 O -0.40 -9.16 11.37 -148.98 -1.69 -10.85 16 27 C 0.03 0.68 6.76 72.35 0.49 1.17 16 28 O -0.36 -6.12 9.93 -148.93 -1.48 -7.59 16 29 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 31 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 32 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.10 1.21 5.66 -2.39 -0.01 1.19 16 34 H 0.41 8.67 3.68 -92.71 -0.34 8.33 16 35 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 37 H 0.07 1.62 6.86 -2.39 -0.02 1.60 16 38 H 0.06 2.01 6.62 -2.38 -0.02 2.00 16 39 H 0.04 1.26 8.14 -2.39 -0.02 1.25 16 40 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.06 2.02 6.62 -2.39 -0.02 2.00 16 42 H 0.07 1.63 6.86 -2.38 -0.02 1.62 16 43 H -0.01 -0.80 8.14 -2.38 -0.02 -0.82 16 44 H -0.01 -0.80 8.14 -2.38 -0.02 -0.82 16 45 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 46 H 0.09 2.05 6.89 -2.39 -0.02 2.03 16 47 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 48 H 0.11 1.00 7.99 -2.39 -0.02 0.98 16 49 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 50 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 51 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 52 H 0.08 1.78 6.13 -2.39 -0.01 1.76 16 53 H 0.06 1.46 7.80 -2.39 -0.02 1.44 16 Total: -1.00 -73.04 400.74 1.61 -71.44 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: 0.56 Total: 19.39 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: 6.79 Total: 2.22 kcal Atomic # 7 Polarization: -90.55 SS G_CDS: -4.53 Total: -95.08 kcal Atomic # 8 Polarization: -39.87 SS G_CDS: -3.23 Total: -43.10 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -73.04 1.61 -71.44 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377036250.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.131 kcal (2) G-P(sol) polarization free energy of solvation -73.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds