Wall clock time and date at job start Tue Mar 31 2020 23:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.49608 * 2 1 4 4 C 1.53040 * 109.50155 * 239.89697 * 2 1 3 5 5 C 1.53040 * 109.53848 * 301.41870 * 4 2 1 6 6 H 1.09001 * 109.49810 * 58.57856 * 5 4 2 7 7 C 1.50703 * 109.50007 * 178.65083 * 5 4 2 8 8 O 1.20821 * 119.99700 * 359.97438 * 7 5 4 9 9 O 1.34227 * 119.99890 * 179.97438 * 7 5 4 10 10 C 1.45202 * 116.99414 * 179.97438 * 9 7 5 11 11 C 1.53001 * 109.47374 * 59.99879 * 10 9 7 12 12 C 1.53002 * 109.46962 * 179.97438 * 10 9 7 13 13 C 1.52997 * 109.47133 * 299.99874 * 10 9 7 14 14 C 1.53631 * 109.23946 * 298.50964 * 5 4 2 15 15 N 1.46920 * 108.54307 * 54.85681 * 14 5 4 16 16 C 1.34774 * 120.63071 * 126.36980 * 15 14 5 17 17 O 1.21590 * 120.00319 * 184.93259 * 16 15 14 18 18 N 1.34778 * 120.00202 * 4.93971 * 16 15 14 19 19 C 1.46501 * 120.00350 * 175.01512 * 18 16 15 20 20 C 1.52999 * 109.46972 * 179.97438 * 19 18 16 21 21 C 1.50705 * 109.46922 * 179.97438 * 20 19 18 22 22 H 1.07997 * 119.99998 * 359.97438 * 21 20 19 23 23 C 1.37878 * 119.99757 * 179.97438 * 21 20 19 24 24 N 1.31513 * 120.00285 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99653 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47067 * 270.00253 * 25 23 21 27 27 H 1.48498 * 109.47165 * 30.00436 * 25 23 21 28 28 H 1.48498 * 109.46925 * 150.00046 * 25 23 21 29 29 C 1.46924 * 118.74010 * 306.09071 * 15 14 5 30 30 H 1.08998 * 109.47433 * 299.93719 * 1 2 3 31 31 H 1.09002 * 109.46679 * 59.94088 * 1 2 3 32 32 H 1.09005 * 109.46990 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.45741 * 61.43350 * 4 2 1 34 34 H 1.09000 * 109.46334 * 181.39690 * 4 2 1 35 35 H 1.09000 * 109.46973 * 59.99759 * 11 10 9 36 36 H 1.09000 * 109.47468 * 179.97438 * 11 10 9 37 37 H 1.08995 * 109.47354 * 299.99980 * 11 10 9 38 38 H 1.09003 * 109.47139 * 59.99599 * 12 10 9 39 39 H 1.09000 * 109.47332 * 180.02562 * 12 10 9 40 40 H 1.09000 * 109.47082 * 300.00055 * 12 10 9 41 41 H 1.08994 * 109.47436 * 60.00053 * 13 10 9 42 42 H 1.08999 * 109.47076 * 180.02562 * 13 10 9 43 43 H 1.08999 * 109.47173 * 299.99987 * 13 10 9 44 44 H 1.09003 * 109.73543 * 295.11823 * 14 5 4 45 45 H 1.08999 * 109.66386 * 174.54913 * 14 5 4 46 46 H 0.97005 * 119.99512 * 355.01727 * 18 16 15 47 47 H 1.08991 * 109.46926 * 59.99672 * 19 18 16 48 48 H 1.09000 * 109.46712 * 299.99744 * 19 18 16 49 49 H 1.09005 * 109.47263 * 59.99962 * 20 19 18 50 50 H 1.08991 * 109.47497 * 299.99815 * 20 19 18 51 51 H 0.97003 * 120.00088 * 179.97438 * 24 23 21 52 52 H 1.09002 * 109.58605 * 173.64793 * 29 15 14 53 53 H 1.09004 * 109.58859 * 294.07869 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0409 -0.7235 -1.2480 5 6 1.5031 -2.1562 -1.2652 6 1 0.4133 -2.1359 -1.2533 7 6 1.9795 -2.8575 -2.5111 8 8 2.6774 -2.2717 -3.3046 9 8 1.6286 -4.1329 -2.7393 10 6 2.1235 -4.7444 -3.9597 11 6 3.6534 -4.7341 -3.9513 12 6 1.6241 -6.1881 -4.0455 13 6 1.6148 -3.9556 -5.1680 14 6 2.0189 -2.9055 -0.0272 15 7 1.6514 -2.1378 1.1703 16 6 0.9746 -2.7213 2.1792 17 8 0.5981 -2.0551 3.1241 18 7 0.7153 -4.0433 2.1409 19 6 0.0769 -4.6981 3.2854 20 6 -0.1034 -6.1875 2.9855 21 6 -0.7596 -6.8612 4.1631 22 1 -1.0213 -6.2848 5.0381 23 6 -1.0257 -8.2135 4.1234 24 7 -0.7065 -8.9156 3.0581 25 14 -1.8384 -9.0487 5.5834 26 1 -0.7937 -9.5340 6.5206 27 1 -2.7181 -8.0778 6.2825 28 1 -2.6494 -10.1981 5.1078 29 6 2.0413 -0.7234 1.2499 30 1 -0.3634 0.5128 0.8905 31 1 -0.3633 0.5148 -0.8895 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6989 -0.1966 -2.1388 34 1 3.1306 -0.7449 -1.2349 35 1 4.0158 -5.2961 -3.0905 36 1 4.0249 -5.1936 -4.8673 37 1 4.0096 -3.7058 -3.8900 38 1 0.5341 -6.1958 -4.0513 39 1 1.9960 -6.6473 -4.9615 40 1 1.9869 -6.7498 -3.1847 41 1 1.9709 -2.9273 -5.1066 42 1 1.9860 -4.4149 -6.0841 43 1 0.5249 -3.9629 -5.1740 44 1 3.1033 -3.0023 -0.0808 45 1 1.5635 -3.8947 0.0190 46 1 0.9514 -4.5613 1.3554 47 1 -0.8971 -4.2439 3.4670 48 1 0.7041 -4.5783 4.1688 49 1 0.8705 -6.6421 2.8036 50 1 -0.7308 -6.3070 2.1023 51 1 -0.8934 -9.8670 3.0304 52 1 1.6006 -0.2724 2.1391 53 1 3.1275 -0.6459 1.2984 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000422180800.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:54:05 Heat of formation + Delta-G solvation = -148.158389 kcal Electronic energy + Delta-G solvation = -31462.125348 eV Core-core repulsion = 27332.738460 eV Total energy + Delta-G solvation = -4129.386888 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.23342 -41.34978 -39.21606 -37.86508 -36.60237 -35.19422 -35.01907 -34.32627 -32.97694 -31.35128 -28.36218 -28.30146 -28.03222 -27.12760 -25.92920 -25.75543 -23.16722 -22.66083 -21.53999 -20.61575 -19.87323 -19.29615 -18.49737 -18.17198 -17.52769 -17.43850 -16.89938 -16.64956 -16.48700 -15.78879 -15.70035 -15.38785 -15.16943 -15.09577 -15.02473 -14.69908 -14.47611 -14.36014 -14.28075 -14.16069 -13.36378 -13.28509 -13.22877 -13.05218 -12.93773 -12.92207 -12.86362 -12.67956 -12.51274 -12.46762 -12.27832 -12.23924 -12.13890 -11.96388 -11.75800 -11.62106 -11.59621 -11.40687 -11.37680 -11.10345 -10.94612 -10.58483 -10.16181 -9.51093 -8.21919 -6.32035 1.09290 1.43160 1.43716 1.53148 1.56205 1.74913 2.12553 2.42210 2.93131 3.12951 3.42934 3.55583 3.64361 3.74088 3.81382 3.91931 3.95734 4.01233 4.11346 4.23400 4.35694 4.46332 4.53696 4.58559 4.60674 4.61866 4.70735 4.72439 4.77802 4.81710 4.83771 4.87832 4.88293 4.90130 4.95316 5.08944 5.12919 5.13288 5.21024 5.26853 5.29039 5.31479 5.37536 5.48931 5.53908 5.59236 5.61078 5.80172 5.90795 6.19042 6.76898 6.80763 6.95250 7.37112 7.54775 8.89965 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009119 B = 0.003196 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3069.725779 B = 8758.028545 C =11355.263669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 H 0.114 0.886 4 C -0.089 4.089 5 C -0.094 4.094 6 H 0.114 0.886 7 C 0.475 3.525 8 O -0.511 6.511 9 O -0.358 6.358 10 C 0.106 3.894 11 C -0.179 4.179 12 C -0.142 4.142 13 C -0.178 4.178 14 C 0.124 3.876 15 N -0.620 5.620 16 C 0.704 3.296 17 O -0.630 6.630 18 N -0.736 5.736 19 C 0.160 3.840 20 C 0.025 3.975 21 C -0.546 4.546 22 H 0.059 0.941 23 C 0.009 3.991 24 N -0.925 5.925 25 Si 0.963 3.037 26 H -0.272 1.272 27 H -0.267 1.267 28 H -0.280 1.280 29 C 0.124 3.876 30 H 0.048 0.952 31 H 0.070 0.930 32 H 0.038 0.962 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.061 0.939 36 H 0.089 0.911 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.099 0.901 40 H 0.063 0.937 41 H 0.067 0.933 42 H 0.089 0.911 43 H 0.060 0.940 44 H 0.090 0.910 45 H 0.087 0.913 46 H 0.403 0.597 47 H 0.043 0.957 48 H 0.045 0.955 49 H 0.008 0.992 50 H 0.007 0.993 51 H 0.265 0.735 52 H 0.078 0.922 53 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.610 14.030 -18.299 24.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 H 0.132 0.868 4 C -0.126 4.126 5 C -0.115 4.115 6 H 0.132 0.868 7 C 0.318 3.682 8 O -0.400 6.400 9 O -0.276 6.276 10 C 0.071 3.929 11 C -0.236 4.236 12 C -0.199 4.199 13 C -0.235 4.235 14 C 0.000 4.000 15 N -0.357 5.357 16 C 0.405 3.595 17 O -0.512 6.512 18 N -0.393 5.393 19 C 0.036 3.964 20 C -0.012 4.012 21 C -0.584 4.584 22 H 0.077 0.923 23 C -0.190 4.190 24 N -0.565 5.565 25 Si 0.788 3.212 26 H -0.198 1.198 27 H -0.191 1.191 28 H -0.205 1.205 29 C 0.002 3.998 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.057 0.943 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.080 0.920 36 H 0.108 0.892 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.118 0.882 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.108 0.892 43 H 0.079 0.921 44 H 0.108 0.892 45 H 0.105 0.895 46 H 0.240 0.760 47 H 0.061 0.939 48 H 0.063 0.937 49 H 0.026 0.974 50 H 0.026 0.974 51 H 0.074 0.926 52 H 0.097 0.903 53 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 8.554 14.458 -17.931 24.571 hybrid contribution -0.435 -1.078 0.259 1.191 sum 8.120 13.380 -17.671 23.606 Atomic orbital electron populations 1.21838 0.95390 1.01129 1.02033 1.21514 0.96036 1.00656 0.93166 0.86751 1.21416 1.01606 0.90992 0.98588 1.21625 1.03798 0.96632 0.89398 0.86775 1.23506 0.76893 0.80240 0.87515 1.90565 1.35487 1.66678 1.47256 1.86602 1.69667 1.27224 1.44066 1.22475 0.94766 0.93994 0.81678 1.22454 0.93529 1.03772 1.03840 1.21907 1.02315 0.91772 1.03938 1.22443 1.01677 1.01735 0.97622 1.21644 1.01419 0.94537 0.82406 1.47169 1.58918 1.12380 1.17223 1.16000 0.78700 0.82020 0.82770 1.90852 1.59488 1.63879 1.36965 1.45463 1.65430 1.07220 1.21146 1.21082 0.95443 0.93121 0.86729 1.19113 0.96177 0.89393 0.96564 1.21452 1.40326 0.94260 1.02381 0.92309 1.25838 0.96129 0.98072 0.98939 1.70058 1.48443 1.07972 1.30015 0.85468 0.78613 0.78010 0.79098 1.19779 1.19109 1.20526 1.21765 1.00260 0.78388 0.99369 0.93254 0.91124 0.94336 0.89992 0.90059 0.92036 0.89249 0.91274 0.91694 0.88214 0.91829 0.91358 0.89195 0.92070 0.89197 0.89500 0.75980 0.93850 0.93707 0.97374 0.97433 0.92572 0.90312 0.89603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 8.70 71.98 0.63 -2.06 16 2 C -0.09 -1.44 3.21 -10.71 -0.03 -1.48 16 3 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 4 C -0.09 -1.32 4.00 30.62 0.12 -1.20 16 5 C -0.09 -1.72 2.45 -11.31 -0.03 -1.74 16 6 H 0.11 2.17 6.33 -2.39 -0.02 2.15 16 7 C 0.48 9.72 6.57 71.24 0.47 10.19 16 8 O -0.51 -11.47 11.48 21.98 0.25 -11.21 16 9 O -0.36 -7.73 9.82 -51.39 -0.50 -8.24 16 10 C 0.11 1.91 1.13 -10.79 -0.01 1.90 16 11 C -0.18 -2.98 8.37 71.98 0.60 -2.38 16 12 C -0.14 -2.23 8.85 71.98 0.64 -1.59 16 13 C -0.18 -2.89 8.37 71.98 0.60 -2.29 16 14 C 0.12 2.52 5.64 86.51 0.49 3.01 16 15 N -0.62 -15.65 2.40 -836.04 -2.01 -17.66 16 16 C 0.70 24.71 8.30 179.05 1.49 26.20 16 17 O -0.63 -27.01 15.77 -4.00 -0.06 -27.07 16 18 N -0.74 -26.71 5.47 -478.54 -2.62 -29.32 16 19 C 0.16 7.07 5.62 86.38 0.49 7.55 16 20 C 0.03 1.27 5.09 29.85 0.15 1.43 16 21 C -0.55 -30.59 9.11 25.60 0.23 -30.35 16 22 H 0.06 3.23 7.74 -2.91 -0.02 3.20 16 23 C 0.01 0.51 5.46 84.66 0.46 0.97 16 24 N -0.93 -54.06 13.29 21.45 0.28 -53.78 16 25 Si 0.96 43.59 29.54 68.60 2.03 45.62 16 26 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 27 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 28 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 29 C 0.12 2.54 5.83 86.37 0.50 3.04 16 30 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.07 1.04 8.14 -2.39 -0.02 1.03 16 32 H 0.04 0.86 5.97 -2.38 -0.01 0.84 16 33 H 0.08 1.18 8.07 -2.39 -0.02 1.16 16 34 H 0.08 1.17 8.13 -2.39 -0.02 1.15 16 35 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.07 1.35 5.89 -2.39 -0.01 1.34 16 38 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.07 1.32 5.89 -2.39 -0.01 1.31 16 42 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.09 1.90 5.64 -2.39 -0.01 1.89 16 46 H 0.40 12.90 5.96 -92.70 -0.55 12.35 16 47 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 48 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 49 H 0.01 0.42 8.14 -2.38 -0.02 0.40 16 50 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 51 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 52 H 0.08 1.97 7.00 -2.39 -0.02 1.95 16 53 H 0.09 1.41 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -69.33 410.97 4.50 -64.83 By element: Atomic # 1 Polarization: 25.30 SS G_CDS: 0.34 Total: 25.64 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: 6.79 Total: 11.20 kcal Atomic # 7 Polarization: -96.42 SS G_CDS: -4.34 Total: -100.76 kcal Atomic # 8 Polarization: -46.21 SS G_CDS: -0.32 Total: -46.52 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -69.33 4.50 -64.83 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422180800.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.331 kcal (2) G-P(sol) polarization free energy of solvation -69.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds