Wall clock time and date at job start Tue Mar 31 2020 23:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.49946 * 2 1 4 4 C 1.53035 * 109.49763 * 239.93279 * 2 1 3 5 5 C 1.53043 * 109.54263 * 178.65559 * 4 2 1 6 6 H 1.09002 * 109.49441 * 301.38451 * 5 4 2 7 7 C 1.50693 * 109.49966 * 181.31801 * 5 4 2 8 8 O 1.20824 * 120.00274 * 0.27574 * 7 5 4 9 9 O 1.34229 * 119.99855 * 179.97438 * 7 5 4 10 10 C 1.45200 * 116.99935 * 179.97438 * 9 7 5 11 11 C 1.53003 * 109.47165 * 60.00643 * 10 9 7 12 12 C 1.53001 * 109.46961 * 180.02562 * 10 9 7 13 13 C 1.52991 * 109.47183 * 300.00206 * 10 9 7 14 14 C 1.53189 * 109.31255 * 61.35976 * 5 4 2 15 15 N 1.46924 * 108.78170 * 305.37231 * 14 5 4 16 16 C 1.34776 * 120.63259 * 233.63042 * 15 14 5 17 17 O 1.21580 * 119.99934 * 174.74727 * 16 15 14 18 18 N 1.34777 * 119.99569 * 354.74553 * 16 15 14 19 19 C 1.46503 * 119.99313 * 184.98507 * 18 16 15 20 20 C 1.53006 * 109.46603 * 179.97438 * 19 18 16 21 21 C 1.50699 * 109.46761 * 179.97438 * 20 19 18 22 22 H 1.07999 * 120.00479 * 359.97438 * 21 20 19 23 23 C 1.37878 * 119.99804 * 180.02562 * 21 20 19 24 24 N 1.31517 * 120.00228 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00003 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47161 * 59.99735 * 25 23 21 27 27 H 1.48506 * 109.47069 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.47219 * 300.00004 * 25 23 21 29 29 C 1.46934 * 118.73597 * 53.60384 * 15 14 5 30 30 H 1.08998 * 109.47685 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47261 * 300.06655 * 1 2 3 32 32 H 1.09000 * 109.47283 * 60.06454 * 1 2 3 33 33 H 1.08998 * 109.46139 * 58.63333 * 4 2 1 34 34 H 1.09003 * 109.45006 * 298.66726 * 4 2 1 35 35 H 1.08998 * 109.47799 * 59.99251 * 11 10 9 36 36 H 1.08998 * 109.47240 * 180.02562 * 11 10 9 37 37 H 1.09005 * 109.46614 * 299.99377 * 11 10 9 38 38 H 1.08995 * 109.47275 * 60.00040 * 12 10 9 39 39 H 1.09003 * 109.47084 * 180.02562 * 12 10 9 40 40 H 1.09001 * 109.47253 * 299.99913 * 12 10 9 41 41 H 1.08995 * 109.47540 * 60.00139 * 13 10 9 42 42 H 1.09003 * 109.47227 * 180.02562 * 13 10 9 43 43 H 1.09003 * 109.47217 * 299.99873 * 13 10 9 44 44 H 1.09008 * 109.58398 * 65.15610 * 14 5 4 45 45 H 1.08999 * 109.58818 * 185.57525 * 14 5 4 46 46 H 0.97000 * 120.00374 * 4.98378 * 18 16 15 47 47 H 1.08996 * 109.47174 * 299.99410 * 19 18 16 48 48 H 1.08995 * 109.47662 * 60.00005 * 19 18 16 49 49 H 1.08996 * 109.46996 * 299.99669 * 20 19 18 50 50 H 1.09004 * 109.46772 * 59.99954 * 20 19 18 51 51 H 0.96995 * 119.99925 * 179.97438 * 24 23 21 52 52 H 1.08999 * 109.58075 * 186.60898 * 29 15 14 53 53 H 1.08995 * 109.58600 * 66.18121 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0407 -0.7228 -1.2485 5 6 3.5708 -0.6941 -1.2666 6 1 3.9154 0.3399 -1.2552 7 6 4.0720 -1.3777 -2.5125 8 8 3.2863 -1.8362 -3.3077 9 8 5.3912 -1.4719 -2.7419 10 6 5.8018 -2.1439 -3.9618 11 6 5.2263 -1.4033 -5.1706 12 6 7.3293 -2.1539 -4.0491 13 6 5.2826 -3.5830 -3.9508 14 6 4.1058 -1.4256 -0.0315 15 7 3.5053 -0.8284 1.1690 16 6 4.2819 -0.3847 2.1772 17 8 3.7802 0.1933 3.1219 18 7 5.6146 -0.5817 2.1381 19 6 6.4455 -0.1978 3.2819 20 6 7.9094 -0.5264 2.9818 21 6 8.7643 -0.1310 4.1582 22 1 8.3092 0.3110 5.0322 23 6 10.1277 -0.3324 4.1182 24 7 10.6821 -0.8701 3.0537 25 14 11.1874 0.1571 5.5766 26 1 10.7491 -0.5930 6.7809 27 1 12.6082 -0.1617 5.2853 28 1 11.0472 1.6148 5.8233 29 6 2.0419 -0.7237 1.2494 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5149 0.8894 32 1 -0.3634 0.5128 -0.8906 33 1 1.6577 -0.2243 -2.1389 34 1 1.6971 -1.7571 -1.2352 35 1 5.5961 -0.3779 -5.1784 36 1 5.5342 -1.9080 -6.0863 37 1 4.1381 -1.3965 -5.1082 38 1 7.7390 -2.6818 -3.1880 39 1 7.6376 -2.6580 -4.9651 40 1 7.6995 -1.1288 -4.0567 41 1 4.1945 -3.5763 -3.8884 42 1 5.5913 -4.0876 -4.8664 43 1 5.6927 -4.1107 -3.0896 44 1 3.8385 -2.4809 -0.0875 45 1 5.1901 -1.3232 0.0127 46 1 6.0235 -0.9776 1.3527 47 1 6.3427 0.8721 3.4629 48 1 6.1238 -0.7483 4.1659 49 1 8.0119 -1.5964 2.8012 50 1 8.2315 0.0239 2.0977 51 1 11.6413 -1.0114 3.0254 52 1 1.7644 -0.1580 2.1388 53 1 1.6063 -1.7217 1.2978 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000422180801.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:54:09 Heat of formation + Delta-G solvation = -152.320153 kcal Electronic energy + Delta-G solvation = -31170.472531 eV Core-core repulsion = 27040.905175 eV Total energy + Delta-G solvation = -4129.567356 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.20276 -41.33275 -39.15093 -37.85732 -36.61881 -35.28754 -35.04363 -34.45012 -33.19447 -31.39864 -28.36445 -28.29974 -27.85672 -27.14358 -25.95707 -25.54302 -22.98216 -22.45422 -21.60694 -20.66487 -20.50253 -19.22880 -18.49151 -18.07476 -17.53923 -17.43596 -16.96205 -16.65471 -16.49185 -15.96093 -15.60600 -15.44643 -15.36934 -15.12888 -15.07265 -14.78175 -14.50099 -14.26806 -14.13315 -13.67238 -13.37289 -13.24627 -13.12921 -13.07814 -12.94695 -12.90936 -12.88729 -12.86463 -12.52272 -12.50409 -12.33480 -12.23034 -12.12264 -11.98137 -11.83659 -11.66769 -11.57303 -11.44583 -11.38381 -11.15450 -10.96408 -10.57946 -10.18925 -9.55121 -8.21596 -6.31828 1.07945 1.43150 1.45760 1.50340 1.54236 1.72789 2.09146 2.42311 2.91284 3.13114 3.41767 3.53573 3.63110 3.73597 3.81108 3.85877 3.95643 4.02016 4.07104 4.29858 4.38579 4.47171 4.53417 4.56939 4.60087 4.61682 4.63899 4.69754 4.77736 4.82189 4.83343 4.87624 4.87837 4.90508 4.93267 5.05047 5.13100 5.17443 5.26703 5.28698 5.29702 5.31124 5.36426 5.48235 5.52768 5.56901 5.61042 5.79539 5.88662 6.19026 6.75628 6.80676 6.92768 7.37172 7.51691 8.90052 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.008761 B = 0.003144 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3195.379917 B = 8904.399745 C =11793.225317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.098 4.098 3 H 0.068 0.932 4 C -0.088 4.088 5 C -0.093 4.093 6 H 0.114 0.886 7 C 0.476 3.524 8 O -0.511 6.511 9 O -0.358 6.358 10 C 0.106 3.894 11 C -0.178 4.178 12 C -0.142 4.142 13 C -0.179 4.179 14 C 0.123 3.877 15 N -0.624 5.624 16 C 0.703 3.297 17 O -0.631 6.631 18 N -0.735 5.735 19 C 0.160 3.840 20 C 0.025 3.975 21 C -0.547 4.547 22 H 0.059 0.941 23 C 0.009 3.991 24 N -0.925 5.925 25 Si 0.964 3.036 26 H -0.269 1.269 27 H -0.281 1.281 28 H -0.269 1.269 29 C 0.127 3.873 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.060 0.940 36 H 0.089 0.911 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.099 0.901 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.089 0.911 43 H 0.061 0.939 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.403 0.597 47 H 0.044 0.956 48 H 0.045 0.955 49 H 0.008 0.992 50 H 0.008 0.992 51 H 0.266 0.734 52 H 0.078 0.922 53 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.473 -3.759 -18.277 24.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.117 4.117 3 H 0.087 0.913 4 C -0.126 4.126 5 C -0.113 4.113 6 H 0.132 0.868 7 C 0.319 3.681 8 O -0.399 6.399 9 O -0.275 6.275 10 C 0.071 3.929 11 C -0.235 4.235 12 C -0.199 4.199 13 C -0.236 4.236 14 C 0.000 4.000 15 N -0.360 5.360 16 C 0.404 3.596 17 O -0.513 6.513 18 N -0.391 5.391 19 C 0.035 3.965 20 C -0.012 4.012 21 C -0.586 4.586 22 H 0.077 0.923 23 C -0.190 4.190 24 N -0.564 5.564 25 Si 0.788 3.212 26 H -0.194 1.194 27 H -0.206 1.206 28 H -0.194 1.194 29 C 0.005 3.995 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.079 0.921 36 H 0.108 0.892 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.118 0.882 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.108 0.892 43 H 0.080 0.920 44 H 0.107 0.893 45 H 0.107 0.893 46 H 0.241 0.759 47 H 0.062 0.938 48 H 0.063 0.937 49 H 0.027 0.973 50 H 0.026 0.974 51 H 0.074 0.926 52 H 0.097 0.903 53 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -16.850 -3.574 -17.909 24.847 hybrid contribution 1.126 0.059 0.237 1.152 sum -15.724 -3.515 -17.671 23.914 Atomic orbital electron populations 1.21703 0.92178 1.03017 1.02735 1.21459 0.97579 0.99422 0.93256 0.91323 1.21452 0.90050 1.02573 0.98506 1.21494 0.98860 1.01435 0.89510 0.86801 1.23439 0.80710 0.76441 0.87464 1.90568 1.57249 1.44980 1.47130 1.86600 1.25461 1.71289 1.44144 1.22480 0.96444 0.92318 0.81667 1.22448 1.02637 1.00798 0.97611 1.21906 0.90495 1.03581 1.03944 1.22452 1.02852 0.94425 1.03872 1.21563 0.98570 0.97575 0.82324 1.47227 1.07070 1.64493 1.17238 1.16015 0.81672 0.79115 0.82751 1.90850 1.74156 1.49263 1.37000 1.45459 1.05278 1.67160 1.21229 1.21103 0.90287 0.98338 0.86723 1.19112 0.89422 0.96117 0.96580 1.21426 0.92899 1.41694 1.02533 0.92277 1.25843 0.99364 0.94833 0.98956 1.70050 1.11826 1.44478 1.30090 0.85523 0.77331 0.79041 0.79295 1.19373 1.20598 1.19385 1.21755 0.76821 1.01641 0.99302 0.91398 0.92080 0.91262 0.90020 0.90220 0.92051 0.89189 0.91360 0.91803 0.88206 0.91681 0.91317 0.89221 0.92008 0.89273 0.89297 0.75903 0.93761 0.93674 0.97342 0.97403 0.92560 0.90348 0.89838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.20 71.98 0.66 -1.03 16 2 C -0.10 -1.59 2.87 -10.72 -0.03 -1.62 16 3 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 4 C -0.09 -1.38 3.74 30.62 0.11 -1.27 16 5 C -0.09 -1.70 2.78 -11.46 -0.03 -1.73 16 6 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 7 C 0.48 9.76 6.57 71.23 0.47 10.23 16 8 O -0.51 -11.51 11.48 21.97 0.25 -11.25 16 9 O -0.36 -7.69 9.82 -51.40 -0.50 -8.19 16 10 C 0.11 1.91 1.13 -10.80 -0.01 1.89 16 11 C -0.18 -2.89 8.37 71.98 0.60 -2.28 16 12 C -0.14 -2.21 8.85 71.98 0.64 -1.58 16 13 C -0.18 -2.97 8.37 71.98 0.60 -2.37 16 14 C 0.12 2.54 5.60 86.36 0.48 3.03 16 15 N -0.62 -16.11 2.97 -836.90 -2.49 -18.60 16 16 C 0.70 24.99 8.29 179.05 1.49 26.48 16 17 O -0.63 -27.35 15.77 -3.97 -0.06 -27.41 16 18 N -0.73 -26.73 5.47 -478.54 -2.62 -29.35 16 19 C 0.16 7.03 5.62 86.38 0.49 7.51 16 20 C 0.03 1.28 5.09 29.85 0.15 1.43 16 21 C -0.55 -30.63 9.11 25.60 0.23 -30.40 16 22 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 23 C 0.01 0.50 5.46 84.65 0.46 0.96 16 24 N -0.93 -54.00 13.29 21.45 0.28 -53.71 16 25 Si 0.96 43.54 29.54 68.60 2.03 45.57 16 26 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 27 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 28 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 29 C 0.13 2.70 5.73 86.36 0.49 3.20 16 30 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 0.76 8.14 -2.38 -0.02 0.75 16 32 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.08 1.23 8.06 -2.39 -0.02 1.21 16 34 H 0.08 1.22 8.13 -2.39 -0.02 1.20 16 35 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.07 1.32 5.88 -2.38 -0.01 1.31 16 38 H 0.06 1.09 8.14 -2.39 -0.02 1.08 16 39 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.07 1.34 5.90 -2.39 -0.01 1.33 16 42 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.06 1.04 8.14 -2.39 -0.02 1.03 16 44 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 45 H 0.09 1.94 5.65 -2.39 -0.01 1.93 16 46 H 0.40 12.90 5.96 -92.71 -0.55 12.35 16 47 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 48 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 49 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 50 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 51 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 52 H 0.08 2.02 6.99 -2.39 -0.02 2.00 16 53 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -69.15 415.61 4.03 -65.12 By element: Atomic # 1 Polarization: 25.06 SS G_CDS: 0.33 Total: 25.38 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: 6.81 Total: 12.45 kcal Atomic # 7 Polarization: -96.85 SS G_CDS: -4.82 Total: -101.66 kcal Atomic # 8 Polarization: -46.54 SS G_CDS: -0.32 Total: -46.86 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -69.15 4.03 -65.12 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422180801.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.200 kcal (2) G-P(sol) polarization free energy of solvation -69.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds