Wall clock time and date at job start Tue Mar 31 2020 23:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.50129 * 2 1 4 4 C 1.53032 * 109.49885 * 120.07297 * 2 1 3 5 5 C 1.53040 * 109.53719 * 58.58523 * 4 2 1 6 6 H 1.08999 * 109.49575 * 301.37853 * 5 4 2 7 7 C 1.50708 * 109.49455 * 181.31661 * 5 4 2 8 8 O 1.20824 * 120.00266 * 0.06672 * 7 5 4 9 9 O 1.34224 * 119.99625 * 179.78440 * 7 5 4 10 10 C 1.45202 * 117.00011 * 180.27605 * 9 7 5 11 11 C 1.52999 * 109.47222 * 60.00003 * 10 9 7 12 12 C 1.52996 * 109.47406 * 179.97438 * 10 9 7 13 13 C 1.53004 * 109.47117 * 300.00233 * 10 9 7 14 14 C 1.53186 * 109.34103 * 61.35011 * 5 4 2 15 15 N 1.46928 * 108.77289 * 305.41010 * 14 5 4 16 16 C 1.34777 * 120.60768 * 233.54014 * 15 14 5 17 17 O 1.21584 * 119.99854 * 174.79783 * 16 15 14 18 18 N 1.34771 * 120.00110 * 354.78979 * 16 15 14 19 19 C 1.46499 * 120.00070 * 184.98244 * 18 16 15 20 20 C 1.52998 * 109.46864 * 180.02562 * 19 18 16 21 21 C 1.50708 * 109.47033 * 180.02562 * 20 19 18 22 22 H 1.07996 * 119.99653 * 359.97438 * 21 20 19 23 23 C 1.37880 * 119.99752 * 180.02562 * 21 20 19 24 24 N 1.31507 * 120.00356 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99680 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.47143 * 89.99811 * 25 23 21 27 27 H 1.48500 * 109.47121 * 210.00267 * 25 23 21 28 28 H 1.48503 * 109.47176 * 330.00203 * 25 23 21 29 29 C 1.46933 * 118.76256 * 53.55589 * 15 14 5 30 30 H 1.08998 * 109.46692 * 299.93332 * 1 2 3 31 31 H 1.09000 * 109.47416 * 59.92601 * 1 2 3 32 32 H 1.08995 * 109.47111 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46399 * 298.55896 * 4 2 1 34 34 H 1.09005 * 109.46208 * 178.60415 * 4 2 1 35 35 H 1.09002 * 109.47192 * 60.00121 * 11 10 9 36 36 H 1.08997 * 109.47446 * 180.02562 * 11 10 9 37 37 H 1.08998 * 109.47260 * 300.00662 * 11 10 9 38 38 H 1.09009 * 109.46808 * 60.00167 * 12 10 9 39 39 H 1.09005 * 109.47118 * 179.97438 * 12 10 9 40 40 H 1.08994 * 109.47216 * 300.00201 * 12 10 9 41 41 H 1.08998 * 109.46702 * 59.99743 * 13 10 9 42 42 H 1.08997 * 109.47463 * 179.97438 * 13 10 9 43 43 H 1.09000 * 109.46903 * 299.99891 * 13 10 9 44 44 H 1.08996 * 109.59163 * 65.16914 * 14 5 4 45 45 H 1.09006 * 109.58452 * 185.59672 * 14 5 4 46 46 H 0.97007 * 119.99980 * 4.99272 * 18 16 15 47 47 H 1.08990 * 109.47528 * 300.00365 * 19 18 16 48 48 H 1.08996 * 109.46867 * 60.00832 * 19 18 16 49 49 H 1.09003 * 109.47499 * 300.00244 * 20 19 18 50 50 H 1.09001 * 109.47277 * 60.00421 * 20 19 18 51 51 H 0.96998 * 120.00165 * 180.02562 * 24 23 21 52 52 H 1.08996 * 109.58703 * 186.62240 * 29 15 14 53 53 H 1.09003 * 109.58250 * 66.20415 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0408 -0.7229 1.2484 5 6 1.5030 -2.1555 1.2662 6 1 0.4133 -2.1352 1.2550 7 6 1.9802 -2.8564 2.5122 8 8 2.6778 -2.2701 3.3056 9 8 1.6254 -4.1301 2.7433 10 6 2.1164 -4.7397 3.9663 11 6 1.6079 -3.9462 5.1715 12 6 1.6120 -6.1813 4.0559 13 6 3.6465 -4.7336 3.9605 14 6 2.0133 -2.9044 0.0312 15 7 1.6514 -2.1384 -1.1693 16 6 0.9749 -2.7226 -2.1780 17 8 0.5985 -2.0569 -3.1233 18 7 0.7157 -4.0445 -2.1390 19 6 0.0775 -4.6999 -3.2833 20 6 -0.1027 -6.1892 -2.9826 21 6 -0.7586 -6.8636 -4.1600 22 1 -1.0210 -6.2875 -5.0349 23 6 -1.0246 -8.2159 -4.1196 24 7 -0.7065 -8.9172 -3.0535 25 14 -1.8383 -9.0517 -5.5787 26 1 -0.7943 -9.5373 -6.5164 27 1 -2.6490 -10.2010 -5.1020 28 1 -2.7185 -8.0811 -6.2776 29 6 2.0412 -0.7240 -1.2496 30 1 -0.3632 0.5128 0.8906 31 1 -0.3634 0.5150 -0.8893 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6989 -0.1955 2.1389 34 1 3.1306 -0.7442 1.2353 35 1 0.5179 -3.9505 5.1756 36 1 1.9768 -4.4034 6.0895 37 1 1.9668 -2.9189 5.1079 38 1 1.9740 -6.7469 3.1972 39 1 1.9810 -6.6390 4.9737 40 1 0.5221 -6.1852 4.0602 41 1 4.0054 -3.7063 3.8969 42 1 4.0151 -5.1907 4.8787 43 1 4.0088 -5.2989 3.1019 44 1 3.0971 -3.0053 0.0868 45 1 1.5541 -3.8921 -0.0129 46 1 0.9515 -4.5621 -1.3531 47 1 -0.8964 -4.2459 -3.4654 48 1 0.7049 -4.5807 -4.1666 49 1 0.8711 -6.6436 -2.8002 50 1 -0.7303 -6.3082 -2.0993 51 1 -0.8933 -9.8686 -3.0253 52 1 1.6006 -0.2735 -2.1389 53 1 3.1274 -0.6466 -1.2981 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000422180803.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:54:16 Heat of formation + Delta-G solvation = -148.165228 kcal Electronic energy + Delta-G solvation = -31462.310250 eV Core-core repulsion = 27332.923065 eV Total energy + Delta-G solvation = -4129.387185 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.24128 -41.35188 -39.22446 -37.86633 -36.60400 -35.19746 -35.01939 -34.32572 -32.99880 -31.35199 -28.36197 -28.30208 -28.03499 -27.13173 -25.93216 -25.75060 -23.16734 -22.66174 -21.54384 -20.61791 -19.87265 -19.29653 -18.49800 -18.17564 -17.52959 -17.44097 -16.89825 -16.65068 -16.48731 -15.78916 -15.70317 -15.38978 -15.16996 -15.09902 -15.02571 -14.70115 -14.47990 -14.36225 -14.28298 -14.16459 -13.36418 -13.28329 -13.22832 -13.05240 -12.93826 -12.92185 -12.86387 -12.67966 -12.51300 -12.46807 -12.28039 -12.23921 -12.13910 -11.96459 -11.75854 -11.62111 -11.59657 -11.40666 -11.37716 -11.10415 -10.94667 -10.58513 -10.16210 -9.51211 -8.21913 -6.32027 1.09272 1.43155 1.43723 1.52816 1.56039 1.74946 2.12531 2.42214 2.93043 3.12966 3.42749 3.56145 3.64395 3.74003 3.81357 3.91939 3.95699 4.01152 4.11204 4.23434 4.35692 4.46320 4.53698 4.58574 4.60619 4.61804 4.70668 4.72450 4.77757 4.81627 4.83719 4.87858 4.88309 4.90078 4.95256 5.08872 5.12812 5.13236 5.20994 5.26804 5.28985 5.31454 5.37426 5.48874 5.53842 5.59183 5.61070 5.80169 5.90777 6.19052 6.76725 6.80769 6.95217 7.37115 7.54762 8.89991 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009120 B = 0.003196 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3069.570987 B = 8759.986357 C =11357.218984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 H 0.115 0.885 4 C -0.089 4.089 5 C -0.095 4.095 6 H 0.114 0.886 7 C 0.476 3.524 8 O -0.511 6.511 9 O -0.358 6.358 10 C 0.106 3.894 11 C -0.178 4.178 12 C -0.142 4.142 13 C -0.179 4.179 14 C 0.123 3.877 15 N -0.620 5.620 16 C 0.704 3.296 17 O -0.630 6.630 18 N -0.736 5.736 19 C 0.160 3.840 20 C 0.025 3.975 21 C -0.546 4.546 22 H 0.059 0.941 23 C 0.009 3.991 24 N -0.925 5.925 25 Si 0.963 3.037 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.267 1.267 29 C 0.124 3.876 30 H 0.070 0.930 31 H 0.049 0.951 32 H 0.037 0.963 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.060 0.940 36 H 0.089 0.911 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.099 0.901 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.089 0.911 43 H 0.061 0.939 44 H 0.089 0.911 45 H 0.087 0.913 46 H 0.403 0.597 47 H 0.043 0.957 48 H 0.045 0.955 49 H 0.008 0.992 50 H 0.007 0.993 51 H 0.265 0.735 52 H 0.078 0.922 53 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.580 14.048 18.310 24.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 H 0.133 0.867 4 C -0.126 4.126 5 C -0.115 4.115 6 H 0.132 0.868 7 C 0.319 3.681 8 O -0.400 6.400 9 O -0.276 6.276 10 C 0.071 3.929 11 C -0.235 4.235 12 C -0.199 4.199 13 C -0.236 4.236 14 C 0.000 4.000 15 N -0.357 5.357 16 C 0.405 3.595 17 O -0.512 6.512 18 N -0.393 5.393 19 C 0.036 3.964 20 C -0.012 4.012 21 C -0.584 4.584 22 H 0.077 0.923 23 C -0.190 4.190 24 N -0.565 5.565 25 Si 0.788 3.212 26 H -0.198 1.198 27 H -0.205 1.205 28 H -0.191 1.191 29 C 0.002 3.998 30 H 0.089 0.911 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.079 0.921 36 H 0.108 0.892 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.118 0.882 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.108 0.892 43 H 0.080 0.920 44 H 0.107 0.893 45 H 0.105 0.895 46 H 0.240 0.760 47 H 0.062 0.938 48 H 0.063 0.937 49 H 0.026 0.974 50 H 0.026 0.974 51 H 0.074 0.926 52 H 0.097 0.903 53 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 8.524 14.476 17.942 24.579 hybrid contribution -0.434 -1.077 -0.258 1.190 sum 8.090 13.398 17.684 23.615 Atomic orbital electron populations 1.21836 0.95387 1.01125 1.02043 1.21514 0.96039 1.00665 0.93163 0.86741 1.21416 1.01610 0.90985 0.98593 1.21543 1.03826 0.96657 0.89431 0.86781 1.23499 0.76891 0.80218 0.87530 1.90565 1.35527 1.66583 1.47297 1.86600 1.69645 1.27399 1.43915 1.22476 0.94805 0.94024 0.81607 1.22445 1.01675 1.01706 0.97656 1.21906 1.02288 0.91802 1.03935 1.22454 0.93527 1.03770 1.03843 1.21550 1.01489 0.94566 0.82421 1.47171 1.59022 1.12439 1.17052 1.15997 0.78679 0.82022 0.82789 1.90851 1.59464 1.63908 1.36954 1.45461 1.65438 1.07224 1.21130 1.21081 0.95448 0.93113 0.86737 1.19115 0.96177 0.89394 0.96563 1.21452 1.40329 0.94254 1.02388 0.92309 1.25836 0.96125 0.98080 0.98933 1.70053 1.48473 1.08000 1.29961 0.85469 0.78617 0.78009 0.79096 1.19776 1.20527 1.19111 1.21763 1.00262 0.78378 0.99371 0.91130 0.93234 0.94344 0.89980 0.90059 0.92061 0.89192 0.91365 0.91832 0.88210 0.91688 0.91279 0.89245 0.92032 0.89257 0.89501 0.75978 0.93848 0.93705 0.97373 0.97435 0.92569 0.90308 0.89604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 8.70 71.98 0.63 -2.06 16 2 C -0.09 -1.44 3.21 -10.72 -0.03 -1.48 16 3 H 0.11 1.23 8.14 -2.38 -0.02 1.21 16 4 C -0.09 -1.33 4.01 30.62 0.12 -1.20 16 5 C -0.09 -1.72 2.43 -11.46 -0.03 -1.75 16 6 H 0.11 2.17 6.34 -2.39 -0.02 2.15 16 7 C 0.48 9.72 6.56 71.24 0.47 10.19 16 8 O -0.51 -11.46 11.48 21.97 0.25 -11.21 16 9 O -0.36 -7.73 9.82 -51.36 -0.50 -8.24 16 10 C 0.11 1.91 1.13 -10.79 -0.01 1.90 16 11 C -0.18 -2.89 8.37 71.98 0.60 -2.29 16 12 C -0.14 -2.23 8.85 71.98 0.64 -1.59 16 13 C -0.18 -2.98 8.37 71.98 0.60 -2.38 16 14 C 0.12 2.52 5.60 86.36 0.48 3.01 16 15 N -0.62 -15.66 2.41 -836.90 -2.02 -17.68 16 16 C 0.70 24.72 8.29 179.06 1.49 26.21 16 17 O -0.63 -27.01 15.77 -3.98 -0.06 -27.07 16 18 N -0.74 -26.71 5.46 -478.57 -2.62 -29.33 16 19 C 0.16 7.06 5.62 86.38 0.49 7.55 16 20 C 0.03 1.27 5.09 29.85 0.15 1.42 16 21 C -0.55 -30.59 9.11 25.60 0.23 -30.36 16 22 H 0.06 3.23 7.74 -2.91 -0.02 3.20 16 23 C 0.01 0.51 5.46 84.66 0.46 0.97 16 24 N -0.93 -54.06 13.29 21.45 0.28 -53.78 16 25 Si 0.96 43.59 29.54 68.60 2.03 45.62 16 26 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 27 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 28 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 29 C 0.12 2.54 5.84 86.36 0.50 3.05 16 30 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.04 0.86 5.97 -2.39 -0.01 0.84 16 33 H 0.08 1.18 8.07 -2.39 -0.02 1.16 16 34 H 0.08 1.17 8.13 -2.38 -0.02 1.15 16 35 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.07 1.32 5.89 -2.39 -0.01 1.31 16 38 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 39 H 0.10 1.09 8.14 -2.38 -0.02 1.07 16 40 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.07 1.35 5.89 -2.39 -0.01 1.34 16 42 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.09 1.90 5.65 -2.38 -0.01 1.89 16 46 H 0.40 12.90 5.96 -92.70 -0.55 12.35 16 47 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 48 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 49 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 50 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 51 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 52 H 0.08 1.97 7.00 -2.39 -0.02 1.95 16 53 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -69.33 410.94 4.49 -64.83 By element: Atomic # 1 Polarization: 25.30 SS G_CDS: 0.34 Total: 25.64 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: 6.79 Total: 11.21 kcal Atomic # 7 Polarization: -96.44 SS G_CDS: -4.35 Total: -100.78 kcal Atomic # 8 Polarization: -46.20 SS G_CDS: -0.31 Total: -46.52 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -69.33 4.49 -64.83 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422180803.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.333 kcal (2) G-P(sol) polarization free energy of solvation -69.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds