Wall clock time and date at job start Tue Mar 31 2020 23:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08996 * 109.49064 * 2 1 4 4 C 1.53096 * 109.47959 * 120.03423 * 2 1 3 5 5 C 1.53171 * 109.16738 * 62.37337 * 4 2 1 6 6 H 1.09003 * 109.54127 * 297.02550 * 5 4 2 7 7 C 1.52997 * 109.54806 * 176.84825 * 5 4 2 8 8 C 1.52995 * 109.47436 * 175.00127 * 7 5 4 9 9 N 1.46498 * 109.47106 * 180.02562 * 8 7 5 10 10 C 1.34780 * 120.00269 * 179.97438 * 9 8 7 11 11 O 1.21359 * 119.99473 * 359.97438 * 10 9 8 12 12 C 1.49442 * 120.00349 * 179.97438 * 10 9 8 13 13 O 1.21348 * 120.00047 * 359.97438 * 12 10 9 14 14 N 1.34780 * 120.00349 * 180.02562 * 12 10 9 15 15 C 1.46491 * 120.00586 * 179.97438 * 14 12 10 16 16 C 1.53001 * 109.47493 * 179.97438 * 15 14 12 17 17 C 1.52991 * 109.47075 * 300.00215 * 16 15 14 18 18 C 1.53001 * 109.46735 * 60.00335 * 16 15 14 19 19 C 1.50696 * 109.46948 * 180.02562 * 16 15 14 20 20 H 1.08000 * 120.00452 * 357.00779 * 19 16 15 21 21 C 1.37879 * 119.99747 * 177.00995 * 19 16 15 22 22 N 1.31518 * 120.00109 * 5.54387 * 21 19 16 23 23 Si 1.86804 * 120.00159 * 185.54088 * 21 19 16 24 24 H 1.48501 * 109.46792 * 85.00011 * 23 21 19 25 25 H 1.48498 * 109.47285 * 204.99882 * 23 21 19 26 26 H 1.48499 * 109.47338 * 325.00125 * 23 21 19 27 27 C 1.53179 * 109.03773 * 56.97734 * 5 4 2 28 28 C 1.53087 * 109.16567 * 303.02361 * 27 5 4 29 29 O 1.42906 * 109.48154 * 239.97426 * 2 1 3 30 30 H 1.09001 * 109.47150 * 299.96677 * 1 2 3 31 31 H 1.08998 * 109.47482 * 59.96841 * 1 2 3 32 32 H 1.09000 * 109.47328 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.52156 * 302.46117 * 4 2 1 34 34 H 1.09002 * 109.52033 * 182.28134 * 4 2 1 35 35 H 1.09008 * 109.47008 * 294.99991 * 7 5 4 36 36 H 1.08998 * 109.46943 * 54.99755 * 7 5 4 37 37 H 1.08998 * 109.47002 * 299.99861 * 8 7 5 38 38 H 1.08998 * 109.47358 * 59.99882 * 8 7 5 39 39 H 0.96995 * 120.00328 * 359.97438 * 9 8 7 40 40 H 0.97008 * 119.99565 * 359.97438 * 14 12 10 41 41 H 1.08998 * 109.47078 * 300.00157 * 15 14 12 42 42 H 1.09011 * 109.46980 * 59.99722 * 15 14 12 43 43 H 1.09003 * 109.47590 * 53.93397 * 17 16 15 44 44 H 1.09005 * 109.46844 * 173.92983 * 17 16 15 45 45 H 1.08999 * 109.47329 * 293.92984 * 17 16 15 46 46 H 1.08998 * 109.47186 * 59.99878 * 18 16 15 47 47 H 1.08996 * 109.46976 * 179.97438 * 18 16 15 48 48 H 1.09001 * 109.46795 * 299.99915 * 18 16 15 49 49 H 0.96999 * 120.00129 * 180.02562 * 22 21 19 50 50 H 1.09000 * 109.52140 * 62.92679 * 27 5 4 51 51 H 1.08995 * 109.52664 * 183.05202 * 27 5 4 52 52 H 1.09000 * 109.48670 * 177.58523 * 28 27 5 53 53 H 1.09001 * 109.48394 * 297.62306 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 6 2.0405 -0.7224 1.2495 5 6 1.5757 -2.1814 1.2121 6 1 0.4867 -2.2181 1.2423 7 6 2.1466 -2.9317 2.4170 8 6 1.5822 -4.3534 2.4469 9 7 2.1285 -5.0715 3.6011 10 6 1.7688 -6.3499 3.8314 11 8 0.9920 -6.9058 3.0828 12 6 2.3265 -7.0826 5.0084 13 8 3.1036 -6.5268 5.7566 14 7 1.9673 -8.3611 5.2384 15 6 2.5143 -9.0796 6.3919 16 6 1.9492 -10.5011 6.4222 17 6 0.4246 -10.4415 6.5348 18 6 2.3375 -11.2318 5.1353 19 6 2.5116 -11.2399 7.6092 20 1 3.2396 -10.7616 8.2476 21 6 2.0967 -12.5266 7.8801 22 7 1.2945 -13.1487 7.0439 23 14 2.6740 -13.3863 9.4348 24 1 1.7858 -13.0139 10.5652 25 1 2.6284 -14.8569 9.2333 26 1 4.0664 -12.9717 9.7419 27 6 2.0763 -2.8323 -0.0810 28 6 1.5644 -2.0285 -1.2791 29 8 2.0065 -0.6741 -1.1664 30 1 -0.3633 0.5133 0.8903 31 1 -0.3634 0.5143 -0.8897 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6421 -0.2359 2.1398 34 1 3.1297 -0.6875 1.2709 35 1 3.2330 -2.9736 2.3375 36 1 1.8693 -2.4113 3.3338 37 1 0.4960 -4.3115 2.5265 38 1 1.8596 -4.8738 1.5302 39 1 2.7491 -4.6270 4.1995 40 1 1.3463 -8.8055 4.6401 41 1 3.6006 -9.1217 6.3119 42 1 2.2374 -8.5592 7.3088 43 1 0.0254 -9.8163 5.7361 44 1 0.0143 -11.4476 6.4481 45 1 0.1478 -10.0182 7.5003 46 1 3.4237 -11.2742 5.0551 47 1 1.9353 -12.2446 5.1571 48 1 1.9304 -10.6972 4.2770 49 1 1.0023 -14.0537 7.2346 50 1 3.1663 -2.8401 -0.0866 51 1 1.7045 -3.8550 -0.1418 52 1 1.9530 -2.4621 -2.2006 53 1 0.4749 -2.0550 -1.2959 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000422390506.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:47:17 Heat of formation + Delta-G solvation = -162.252395 kcal Electronic energy + Delta-G solvation = -29718.760084 eV Core-core repulsion = 25588.762033 eV Total energy + Delta-G solvation = -4129.998050 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.72232 -40.82816 -39.75215 -38.19594 -37.23089 -35.37165 -34.76511 -33.15503 -32.74823 -30.87611 -28.94884 -27.86855 -27.59475 -27.20788 -25.67192 -24.41898 -23.88150 -22.36188 -21.43385 -20.70599 -20.16778 -19.59784 -18.05982 -17.74375 -17.29319 -17.17621 -16.90593 -16.72296 -16.44268 -16.28050 -16.04075 -15.60075 -15.41806 -15.06264 -14.89564 -14.74553 -14.49861 -14.23929 -14.04868 -13.74654 -13.39920 -13.26013 -13.14414 -13.10456 -12.86205 -12.76561 -12.70052 -12.62298 -12.59524 -12.40084 -12.26972 -12.13094 -12.10471 -11.77772 -11.50651 -11.31394 -11.30318 -10.93110 -10.77377 -10.65132 -10.40541 -10.35942 -10.28911 -10.11797 -8.02054 -6.17186 0.34589 1.35948 1.44849 1.47751 1.55031 2.14645 2.45596 2.71835 2.99162 3.22200 3.46249 3.61684 3.75350 3.85510 4.00936 4.12898 4.20603 4.30473 4.34160 4.45170 4.46970 4.51609 4.52289 4.58119 4.64688 4.67757 4.80808 4.89541 4.92205 4.92708 4.97739 5.03221 5.05118 5.07230 5.11694 5.16266 5.18627 5.21283 5.24019 5.25585 5.32765 5.47837 5.51498 5.64454 5.68402 5.94813 6.09656 6.18265 6.35528 6.38899 6.41096 6.74163 6.86778 6.96526 7.50299 8.97789 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.036789 B = 0.001612 C = 0.001588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.914979 B =17361.173162 C =17631.210353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.079 3.921 3 H 0.106 0.894 4 C -0.140 4.140 5 C -0.083 4.083 6 H 0.083 0.917 7 C -0.117 4.117 8 C 0.114 3.886 9 N -0.688 5.688 10 C 0.512 3.488 11 O -0.543 6.543 12 C 0.497 3.503 13 O -0.552 6.552 14 N -0.682 5.682 15 C 0.143 3.857 16 C 0.048 3.952 17 C -0.121 4.121 18 C -0.122 4.122 19 C -0.527 4.527 20 H 0.051 0.949 21 C 0.027 3.973 22 N -0.900 5.900 23 Si 0.948 3.052 24 H -0.278 1.278 25 H -0.286 1.286 26 H -0.273 1.273 27 C -0.154 4.154 28 C 0.053 3.947 29 O -0.401 6.401 30 H 0.078 0.922 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.088 0.912 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.420 0.580 40 H 0.413 0.587 41 H 0.054 0.946 42 H 0.055 0.945 43 H 0.031 0.969 44 H 0.060 0.940 45 H 0.023 0.977 46 H 0.023 0.977 47 H 0.063 0.937 48 H 0.029 0.971 49 H 0.260 0.740 50 H 0.067 0.933 51 H 0.079 0.921 52 H 0.095 0.905 53 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.352 25.795 -14.506 29.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.022 3.978 3 H 0.124 0.876 4 C -0.178 4.178 5 C -0.102 4.102 6 H 0.101 0.899 7 C -0.155 4.155 8 C -0.008 4.008 9 N -0.341 5.341 10 C 0.292 3.708 11 O -0.421 6.421 12 C 0.277 3.723 13 O -0.431 6.431 14 N -0.334 5.334 15 C 0.021 3.979 16 C 0.047 3.953 17 C -0.178 4.178 18 C -0.180 4.180 19 C -0.565 4.565 20 H 0.070 0.930 21 C -0.173 4.173 22 N -0.538 5.538 23 Si 0.774 3.226 24 H -0.204 1.204 25 H -0.212 1.212 26 H -0.198 1.198 27 C -0.192 4.192 28 C -0.023 4.023 29 O -0.320 6.320 30 H 0.097 0.903 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.106 0.894 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.103 0.897 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.257 0.743 40 H 0.251 0.749 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.050 0.950 44 H 0.079 0.921 45 H 0.043 0.957 46 H 0.042 0.958 47 H 0.082 0.918 48 H 0.048 0.952 49 H 0.069 0.931 50 H 0.086 0.914 51 H 0.097 0.903 52 H 0.114 0.886 53 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.333 25.698 -14.673 29.622 hybrid contribution 0.133 -1.053 1.097 1.527 sum -1.200 24.645 -13.576 28.162 Atomic orbital electron populations 1.22444 0.95734 1.02917 1.03133 1.22317 0.94066 0.96585 0.84821 0.87629 1.22203 1.01760 0.95083 0.98730 1.21125 1.00962 0.94576 0.93503 0.89916 1.21791 1.01531 0.92526 0.99655 1.21712 0.98999 0.92780 0.87348 1.45770 1.47139 1.11223 1.29942 1.19999 0.81957 0.83593 0.85255 1.90756 1.35123 1.67994 1.48182 1.20374 0.82461 0.83213 0.86222 1.90712 1.35694 1.67832 1.48826 1.46089 1.46131 1.11781 1.29393 1.21534 0.97275 0.93090 0.86051 1.18405 0.93186 0.88979 0.94688 1.21671 0.97385 1.01142 0.97650 1.21712 0.98371 1.02249 0.95695 1.21214 1.24852 0.99267 1.11180 0.93031 1.25498 0.95299 0.97721 0.98798 1.69946 1.35049 1.12755 1.36095 0.85736 0.78689 0.77462 0.80677 1.20435 1.21181 1.19839 1.22313 1.01830 1.00043 0.94975 1.22666 0.99232 0.81718 0.98707 1.87967 1.74233 1.25593 1.44236 0.90286 0.92294 0.91854 0.89382 0.91311 0.90422 0.89675 0.91002 0.90960 0.74275 0.74905 0.92750 0.92649 0.95041 0.92102 0.95730 0.95812 0.91817 0.95218 0.93069 0.91422 0.90296 0.88642 0.92263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.59 8.65 71.98 0.62 -0.96 16 2 C 0.08 0.83 3.91 30.62 0.12 0.95 16 3 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 4 C -0.14 -1.21 4.92 30.68 0.15 -1.06 16 5 C -0.08 -0.76 1.96 -10.68 -0.02 -0.78 16 6 H 0.08 0.73 6.62 -2.39 -0.02 0.71 16 7 C -0.12 -1.14 4.80 30.59 0.15 -0.99 16 8 C 0.11 1.74 5.44 86.38 0.47 2.21 16 9 N -0.69 -14.07 5.55 -464.42 -2.58 -16.64 16 10 C 0.51 14.64 7.89 87.27 0.69 15.33 16 11 O -0.54 -17.78 16.48 -3.28 -0.05 -17.83 16 12 C 0.50 16.69 7.89 87.27 0.69 17.38 16 13 O -0.55 -20.25 16.48 -3.24 -0.05 -20.30 16 14 N -0.68 -24.58 4.90 -464.42 -2.27 -26.86 16 15 C 0.14 5.91 4.50 86.38 0.39 6.30 16 16 C 0.05 2.22 0.50 -52.93 -0.03 2.19 16 17 C -0.12 -5.46 8.03 71.98 0.58 -4.88 16 18 C -0.12 -5.56 8.11 71.98 0.58 -4.97 16 19 C -0.53 -27.30 8.01 25.60 0.20 -27.10 16 20 H 0.05 2.68 7.75 -2.91 -0.02 2.66 16 21 C 0.03 1.40 5.13 84.65 0.43 1.83 16 22 N -0.90 -48.15 9.45 21.45 0.20 -47.95 16 23 Si 0.95 42.14 29.54 68.60 2.03 44.17 16 24 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 25 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 26 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 27 C -0.15 -1.67 5.10 30.68 0.16 -1.51 16 28 C 0.05 0.63 6.52 72.01 0.47 1.10 16 29 O -0.40 -6.11 10.60 -148.98 -1.58 -7.69 16 30 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.06 0.56 4.98 -2.39 -0.01 0.55 16 33 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.08 0.74 8.14 -2.38 -0.02 0.73 16 36 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.07 1.18 6.66 -2.39 -0.02 1.16 16 39 H 0.42 7.50 7.94 -92.71 -0.74 6.76 16 40 H 0.41 14.56 5.63 -92.70 -0.52 14.04 16 41 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 42 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 43 H 0.03 1.24 6.71 -2.39 -0.02 1.22 16 44 H 0.06 3.04 6.25 -2.38 -0.01 3.02 16 45 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.06 3.21 6.10 -2.39 -0.01 3.20 16 48 H 0.03 1.18 6.86 -2.39 -0.02 1.16 16 49 H 0.26 13.42 8.31 -92.71 -0.77 12.65 16 50 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 51 H 0.08 0.84 6.75 -2.39 -0.02 0.82 16 52 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 53 H 0.06 0.62 6.34 -2.39 -0.02 0.60 16 Total: -1.00 -61.05 406.58 1.01 -60.04 By element: Atomic # 1 Polarization: 28.37 SS G_CDS: -0.34 Total: 28.03 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: 5.66 Total: 5.04 kcal Atomic # 7 Polarization: -86.80 SS G_CDS: -4.65 Total: -91.45 kcal Atomic # 8 Polarization: -44.13 SS G_CDS: -1.69 Total: -45.82 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -61.05 1.01 -60.04 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422390506.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.214 kcal (2) G-P(sol) polarization free energy of solvation -61.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds