Wall clock time and date at job start Tue Mar 31 2020 23:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 109.48971 * 2 1 4 4 C 1.53091 * 109.48143 * 120.03112 * 2 1 3 5 5 C 1.53180 * 109.16358 * 177.59256 * 4 2 1 6 6 H 1.08999 * 109.54223 * 62.97177 * 5 4 2 7 7 C 1.52999 * 109.54120 * 183.15191 * 5 4 2 8 8 C 1.53004 * 109.46933 * 184.99921 * 7 5 4 9 9 N 1.46499 * 109.47126 * 180.02562 * 8 7 5 10 10 C 1.34774 * 119.99989 * 180.02562 * 9 8 7 11 11 O 1.21354 * 119.99962 * 359.97438 * 10 9 8 12 12 C 1.49450 * 120.00083 * 179.97438 * 10 9 8 13 13 O 1.21354 * 119.99956 * 0.02562 * 12 10 9 14 14 N 1.34777 * 120.00133 * 179.72603 * 12 10 9 15 15 C 1.46500 * 120.00049 * 180.27943 * 14 12 10 16 16 C 1.52992 * 109.47138 * 179.97438 * 15 14 12 17 17 C 1.53005 * 109.47275 * 299.99838 * 16 15 14 18 18 C 1.53002 * 109.47394 * 59.99561 * 16 15 14 19 19 C 1.50703 * 109.47538 * 179.97438 * 16 15 14 20 20 H 1.08001 * 119.99516 * 1.35073 * 19 16 15 21 21 C 1.37874 * 120.00474 * 181.34736 * 19 16 15 22 22 N 1.31515 * 119.99953 * 193.97883 * 21 19 16 23 23 Si 1.86800 * 119.99957 * 13.97581 * 21 19 16 24 24 H 1.48498 * 109.47069 * 84.55046 * 23 21 19 25 25 H 1.48498 * 109.47323 * 204.55168 * 23 21 19 26 26 H 1.48504 * 109.46927 * 324.55200 * 23 21 19 27 27 C 1.53177 * 109.03784 * 303.01907 * 5 4 2 28 28 C 1.53098 * 109.16046 * 56.97829 * 27 5 4 29 29 O 1.42903 * 109.41637 * 302.39079 * 28 27 5 30 30 H 1.08990 * 109.47117 * 299.96915 * 1 2 3 31 31 H 1.08999 * 109.46562 * 59.97126 * 1 2 3 32 32 H 1.08999 * 109.46939 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.52236 * 57.68481 * 4 2 1 34 34 H 1.09000 * 109.57485 * 297.53091 * 4 2 1 35 35 H 1.09003 * 109.47130 * 65.00411 * 7 5 4 36 36 H 1.08998 * 109.47197 * 304.99607 * 7 5 4 37 37 H 1.08997 * 109.46911 * 59.99882 * 8 7 5 38 38 H 1.09002 * 109.47285 * 300.00186 * 8 7 5 39 39 H 0.97002 * 120.00125 * 359.97438 * 9 8 7 40 40 H 0.97002 * 119.99780 * 0.27078 * 14 12 10 41 41 H 1.09000 * 109.46748 * 299.99695 * 15 14 12 42 42 H 1.08998 * 109.47651 * 59.99468 * 15 14 12 43 43 H 1.08997 * 109.47032 * 69.36549 * 17 16 15 44 44 H 1.08999 * 109.46992 * 189.36937 * 17 16 15 45 45 H 1.09000 * 109.46678 * 309.36767 * 17 16 15 46 46 H 1.09000 * 109.46940 * 59.99879 * 18 16 15 47 47 H 1.09000 * 109.47562 * 179.97438 * 18 16 15 48 48 H 1.08997 * 109.47168 * 300.00680 * 18 16 15 49 49 H 0.97001 * 120.00157 * 180.02562 * 22 21 19 50 50 H 1.08993 * 109.52478 * 176.88659 * 27 5 4 51 51 H 1.09001 * 109.52007 * 297.07705 * 27 5 4 52 52 H 1.09003 * 109.47472 * 182.40719 * 28 27 5 53 53 H 1.08998 * 109.48744 * 62.38514 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0406 -0.7223 1.2495 5 6 3.5712 -0.7709 1.2121 6 1 3.9690 0.2435 1.2423 7 6 4.0877 -1.5595 2.4171 8 6 5.6164 -1.5017 2.4471 9 7 6.1111 -2.2574 3.6006 10 6 7.4362 -2.3449 3.8308 11 8 8.2195 -1.7982 3.0823 12 6 7.9408 -3.1153 5.0078 13 8 7.1575 -3.6623 5.7560 14 7 9.2661 -3.2074 5.2349 15 6 9.7611 -3.9677 6.3852 16 6 11.2898 -3.9146 6.4120 17 6 11.8440 -4.5229 5.1221 18 6 11.7478 -2.4593 6.5273 19 6 11.7990 -4.6962 7.5957 20 1 11.1030 -5.2003 8.2497 21 6 13.1534 -4.7677 7.8436 22 7 13.6203 -5.6564 8.6933 23 14 14.3252 -3.6024 6.9727 24 1 14.3914 -2.3192 7.7171 25 1 15.6781 -4.2120 6.9157 26 1 13.8375 -3.3497 5.5930 27 6 4.0177 -1.4600 -0.0809 28 6 3.4307 -0.7092 -1.2791 29 8 2.0066 -0.6742 -1.1664 30 1 -0.3633 0.5133 0.8902 31 1 -0.3632 0.5143 -0.8897 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6443 -1.7375 1.2709 34 1 1.7148 -0.1854 2.1404 35 1 3.7649 -2.5976 2.3375 36 1 3.6897 -1.1244 3.3338 37 1 5.9392 -0.4637 2.5266 38 1 6.0145 -1.9368 1.5304 39 1 5.4850 -2.6940 4.1991 40 1 9.8923 -2.7705 4.6366 41 1 9.3660 -3.5346 7.3041 42 1 9.4353 -5.0046 6.3030 43 1 11.6154 -3.8658 4.2831 44 1 12.9244 -4.6382 5.2096 45 1 11.3869 -5.4982 4.9548 46 1 11.3530 -2.0259 7.4462 47 1 12.8369 -2.4215 6.5468 48 1 11.3795 -1.8937 5.6714 49 1 14.5732 -5.7065 8.8680 50 1 5.1059 -1.4497 -0.1421 51 1 3.6614 -2.4901 -0.0865 52 1 3.7101 -1.2202 -2.2005 53 1 3.8193 0.3090 -1.2960 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000422390507.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:47:21 Heat of formation + Delta-G solvation = -150.199934 kcal Electronic energy + Delta-G solvation = -29630.332247 eV Core-core repulsion = 25500.856831 eV Total energy + Delta-G solvation = -4129.475417 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.74178 -40.59495 -39.80224 -38.44270 -37.24817 -35.38399 -34.76639 -33.66423 -33.43013 -30.82065 -28.80091 -28.19063 -27.99842 -27.07032 -25.74737 -24.28287 -23.72615 -22.08141 -21.51009 -21.09410 -20.88754 -19.52163 -18.15536 -17.88704 -17.32214 -17.20319 -17.15481 -16.80495 -16.38852 -16.34398 -16.19614 -15.67490 -15.35990 -15.23483 -14.93634 -14.82870 -14.63286 -14.37568 -14.17877 -14.04065 -13.77743 -13.58252 -13.26520 -13.20016 -12.99280 -12.94626 -12.79675 -12.70891 -12.42846 -12.39784 -12.20771 -12.01006 -11.97882 -11.78917 -11.77904 -11.33676 -11.16369 -11.10175 -10.74401 -10.62211 -10.42212 -10.36166 -10.29736 -10.18199 -8.30218 -6.31561 0.33892 1.33798 1.36988 1.38782 1.50400 2.13907 2.34518 2.67022 2.89708 3.05889 3.44034 3.58095 3.73867 3.86866 4.01141 4.03526 4.12313 4.19511 4.28774 4.32104 4.37947 4.38044 4.50128 4.56035 4.64296 4.69573 4.72655 4.78918 4.82195 4.83125 4.83924 4.90053 4.91580 4.97112 5.03447 5.03789 5.07511 5.13639 5.14840 5.21741 5.24256 5.29023 5.33555 5.46613 5.46822 5.67380 5.74888 5.93442 6.27826 6.36046 6.38020 6.70100 6.75834 6.94877 7.33434 8.86300 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.034644 B = 0.001651 C = 0.001613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.015726 B =16953.593552 C =17357.972227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.079 3.921 3 H 0.061 0.939 4 C -0.140 4.140 5 C -0.083 4.083 6 H 0.081 0.919 7 C -0.117 4.117 8 C 0.114 3.886 9 N -0.689 5.689 10 C 0.513 3.487 11 O -0.541 6.541 12 C 0.499 3.501 13 O -0.550 6.550 14 N -0.683 5.683 15 C 0.153 3.847 16 C 0.025 3.975 17 C -0.143 4.143 18 C -0.149 4.149 19 C -0.514 4.514 20 H 0.035 0.965 21 C 0.021 3.979 22 N -0.942 5.942 23 Si 0.940 3.060 24 H -0.282 1.282 25 H -0.315 1.315 26 H -0.210 1.210 27 C -0.154 4.154 28 C 0.057 3.943 29 O -0.404 6.404 30 H 0.087 0.913 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.420 0.580 40 H 0.416 0.584 41 H 0.059 0.941 42 H 0.057 0.943 43 H 0.058 0.942 44 H 0.046 0.954 45 H 0.045 0.955 46 H 0.052 0.948 47 H 0.035 0.965 48 H 0.066 0.934 49 H 0.264 0.736 50 H 0.081 0.919 51 H 0.067 0.933 52 H 0.098 0.902 53 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.322 14.285 -20.226 34.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.021 3.979 3 H 0.079 0.921 4 C -0.178 4.178 5 C -0.102 4.102 6 H 0.099 0.901 7 C -0.155 4.155 8 C -0.008 4.008 9 N -0.342 5.342 10 C 0.293 3.707 11 O -0.418 6.418 12 C 0.279 3.721 13 O -0.429 6.429 14 N -0.336 5.336 15 C 0.030 3.970 16 C 0.024 3.976 17 C -0.200 4.200 18 C -0.206 4.206 19 C -0.552 4.552 20 H 0.054 0.946 21 C -0.177 4.177 22 N -0.581 5.581 23 Si 0.769 3.231 24 H -0.209 1.209 25 H -0.244 1.244 26 H -0.134 1.134 27 C -0.192 4.192 28 C -0.019 4.019 29 O -0.324 6.324 30 H 0.105 0.895 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.095 0.905 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.257 0.743 40 H 0.254 0.746 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.065 0.935 45 H 0.064 0.936 46 H 0.071 0.929 47 H 0.054 0.946 48 H 0.085 0.915 49 H 0.073 0.927 50 H 0.099 0.901 51 H 0.086 0.914 52 H 0.116 0.884 53 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -24.321 14.127 -20.287 34.679 hybrid contribution 1.194 0.002 0.602 1.337 sum -23.127 14.129 -19.685 33.496 Atomic orbital electron populations 1.21789 0.92547 1.02804 1.03074 1.22249 0.95605 0.95123 0.84889 0.92082 1.22246 0.94894 1.02018 0.98655 1.21109 0.95549 0.99854 0.93653 0.90076 1.21781 0.92050 1.02125 0.99539 1.21708 0.95359 0.96328 0.87391 1.45786 1.05744 1.52662 1.29966 1.19947 0.84181 0.81332 0.85219 1.90752 1.56285 1.46691 1.48121 1.20374 0.83587 0.81949 0.86158 1.90739 1.56060 1.47361 1.48730 1.45985 1.06441 1.51627 1.29513 1.21302 0.94440 0.94719 0.86569 1.18697 0.91008 0.93459 0.94465 1.22244 1.00870 1.00229 0.96705 1.22319 0.99570 0.97199 1.01532 1.20953 0.92204 1.31220 1.10870 0.94649 1.25772 0.99960 0.96144 0.95808 1.70095 1.14398 1.34985 1.38648 0.86401 0.76106 0.78222 0.82325 1.20933 1.24423 1.13375 1.22325 1.01666 1.00305 0.94878 1.22664 0.80273 1.00125 0.98861 1.87913 1.22044 1.78398 1.44058 0.89461 0.92238 0.92361 0.91372 0.89393 0.90464 0.89693 0.90873 0.90860 0.74300 0.74612 0.92285 0.92510 0.92297 0.93486 0.93580 0.92921 0.94641 0.91480 0.92664 0.90051 0.91422 0.88424 0.92582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.56 71.98 0.69 -0.57 16 2 C 0.08 0.83 3.26 30.63 0.10 0.93 16 3 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 4 C -0.14 -1.18 4.71 30.68 0.14 -1.04 16 5 C -0.08 -0.70 2.27 -10.67 -0.02 -0.72 16 6 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 7 C -0.12 -1.01 4.80 30.60 0.15 -0.87 16 8 C 0.11 1.55 5.44 86.38 0.47 2.02 16 9 N -0.69 -12.75 5.55 -464.41 -2.58 -15.32 16 10 C 0.51 13.25 7.89 87.27 0.69 13.94 16 11 O -0.54 -15.86 16.48 -3.26 -0.05 -15.92 16 12 C 0.50 15.30 7.89 87.27 0.69 15.99 16 13 O -0.55 -19.17 16.48 -3.26 -0.05 -19.22 16 14 N -0.68 -21.79 5.00 -464.42 -2.32 -24.11 16 15 C 0.15 5.86 4.49 86.38 0.39 6.25 16 16 C 0.02 1.05 0.50 -52.93 -0.03 1.02 16 17 C -0.14 -5.52 7.53 71.98 0.54 -4.98 16 18 C -0.15 -5.68 7.52 71.98 0.54 -5.14 16 19 C -0.51 -27.74 8.62 25.60 0.22 -27.52 16 20 H 0.04 2.14 7.99 -2.91 -0.02 2.12 16 21 C 0.02 1.18 5.32 84.65 0.45 1.63 16 22 N -0.94 -57.64 13.96 21.45 0.30 -57.34 16 23 Si 0.94 42.80 22.79 68.60 1.56 44.36 16 24 H -0.28 -12.61 7.10 99.48 0.71 -11.91 16 25 H -0.31 -14.78 7.11 99.48 0.71 -14.08 16 26 H -0.21 -8.25 4.65 99.48 0.46 -7.79 16 27 C -0.15 -1.52 5.10 30.69 0.16 -1.36 16 28 C 0.06 0.63 6.84 72.01 0.49 1.12 16 29 O -0.40 -6.06 10.41 -148.98 -1.55 -7.61 16 30 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.07 1.06 6.66 -2.39 -0.02 1.04 16 39 H 0.42 6.84 7.94 -92.71 -0.74 6.10 16 40 H 0.42 12.19 5.73 -92.71 -0.53 11.66 16 41 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 42 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 43 H 0.06 1.87 7.13 -2.39 -0.02 1.85 16 44 H 0.05 1.92 4.30 -2.39 -0.01 1.90 16 45 H 0.05 1.77 8.12 -2.39 -0.02 1.75 16 46 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 47 H 0.04 1.41 2.25 -2.39 -0.01 1.40 16 48 H 0.07 2.08 6.86 -2.39 -0.02 2.07 16 49 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 50 H 0.08 0.75 6.75 -2.39 -0.02 0.73 16 51 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 52 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 53 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 Total: -1.00 -68.52 403.58 0.38 -68.14 By element: Atomic # 1 Polarization: 26.92 SS G_CDS: -0.60 Total: 26.32 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: 5.67 Total: 0.70 kcal Atomic # 7 Polarization: -92.18 SS G_CDS: -4.60 Total: -96.78 kcal Atomic # 8 Polarization: -41.09 SS G_CDS: -1.66 Total: -42.75 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 1.56 Total: 44.36 kcal Total: -68.52 0.38 -68.14 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422390507.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.060 kcal (2) G-P(sol) polarization free energy of solvation -68.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds