Wall clock time and date at job start Wed Apr 1 2020 00:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.47189 * 2 1 4 4 C 1.50690 * 109.47694 * 239.99698 * 2 1 3 5 5 H 1.08005 * 120.00592 * 245.45830 * 4 2 1 6 6 C 1.37879 * 120.00236 * 65.45670 * 4 2 1 7 7 N 1.31517 * 119.99458 * 9.61782 * 6 4 2 8 8 Si 1.86792 * 120.00315 * 189.62030 * 6 4 2 9 9 H 1.48499 * 109.47210 * 84.99431 * 8 6 4 10 10 H 1.48508 * 109.47337 * 204.99119 * 8 6 4 11 11 H 1.48498 * 109.47253 * 324.99302 * 8 6 4 12 12 N 1.46507 * 109.46949 * 119.99640 * 2 1 3 13 13 C 1.46502 * 120.00053 * 60.00139 * 12 2 1 14 14 C 1.34777 * 119.99900 * 240.00576 * 12 2 1 15 15 O 1.21280 * 120.00235 * 0.02562 * 14 12 2 16 16 C 1.50700 * 119.99992 * 180.02562 * 14 12 2 17 17 H 1.09004 * 110.64199 * 56.85101 * 16 14 12 18 18 C 1.55163 * 110.87217 * 293.60963 * 16 14 12 19 19 C 1.54907 * 101.58306 * 206.06227 * 18 16 14 20 20 N 1.47747 * 104.83860 * 37.09232 * 19 18 16 21 21 C 1.34784 * 125.81839 * 155.83216 * 20 19 18 22 22 O 1.21517 * 119.99430 * 179.90822 * 21 20 19 23 23 O 1.34632 * 119.99996 * 359.90157 * 21 20 19 24 24 C 1.45202 * 116.99864 * 180.02562 * 23 21 20 25 25 C 1.52996 * 109.47092 * 60.00063 * 24 23 21 26 26 C 1.52997 * 109.47314 * 180.02562 * 24 23 21 27 27 C 1.53009 * 109.46862 * 300.00393 * 24 23 21 28 28 C 1.47014 * 108.53106 * 335.75160 * 20 19 18 29 29 H 1.08995 * 109.88520 * 120.68070 * 28 20 19 30 30 C 1.53003 * 109.88108 * 241.68867 * 28 20 19 31 31 H 1.09000 * 109.47749 * 303.29153 * 1 2 3 32 32 H 1.09005 * 109.47017 * 63.29167 * 1 2 3 33 33 H 1.08999 * 109.47399 * 183.28533 * 1 2 3 34 34 H 0.97005 * 119.99691 * 179.97438 * 7 6 4 35 35 H 1.08998 * 109.47183 * 270.00736 * 13 12 2 36 36 H 1.09001 * 109.46585 * 29.99905 * 13 12 2 37 37 H 1.08997 * 109.46872 * 150.00194 * 13 12 2 38 38 H 1.08999 * 111.00016 * 324.13898 * 18 16 14 39 39 H 1.09006 * 111.00777 * 87.98357 * 18 16 14 40 40 H 1.09002 * 110.36666 * 155.84386 * 19 18 16 41 41 H 1.08998 * 110.36722 * 278.05846 * 19 18 16 42 42 H 1.08996 * 109.47264 * 60.00384 * 25 24 23 43 43 H 1.09004 * 109.46808 * 180.02562 * 25 24 23 44 44 H 1.09002 * 109.47082 * 299.99997 * 25 24 23 45 45 H 1.09001 * 109.47002 * 60.00047 * 26 24 23 46 46 H 1.08998 * 109.47463 * 180.02562 * 26 24 23 47 47 H 1.08994 * 109.47145 * 300.00133 * 26 24 23 48 48 H 1.08991 * 109.47102 * 59.99846 * 27 24 23 49 49 H 1.08998 * 109.46771 * 180.02562 * 27 24 23 50 50 H 1.09001 * 109.46677 * 299.99503 * 27 24 23 51 51 H 1.09005 * 109.46994 * 178.28528 * 30 28 20 52 52 H 1.08993 * 109.47495 * 58.28386 * 30 28 20 53 53 H 1.09001 * 109.47421 * 298.28210 * 30 28 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.5787 -1.6371 -1.1337 6 6 1.7947 -0.1775 -2.4795 7 7 1.3003 1.0359 -2.5935 8 14 2.1746 -1.1789 -4.0099 9 1 1.0217 -2.0609 -4.3232 10 1 2.4217 -0.2627 -5.1523 11 1 3.3824 -2.0091 -3.7710 12 7 2.0182 -0.6906 1.1963 13 6 1.6643 -2.0932 1.4282 14 6 2.7930 -0.0355 2.0835 15 8 3.0856 1.1258 1.8918 16 6 3.2958 -0.7460 3.3137 17 1 3.8585 -1.6382 3.0391 18 6 2.1219 -1.1076 4.2618 19 6 2.8364 -1.1606 5.6352 20 7 3.8351 -0.0730 5.5844 21 6 4.3639 0.5626 6.6489 22 8 5.1828 1.4452 6.4842 23 8 3.9847 0.2198 7.8944 24 6 4.5952 0.9470 8.9929 25 6 4.2722 2.4366 8.8603 26 6 4.0452 0.4217 10.3205 27 6 6.1119 0.7487 8.9555 28 6 4.1579 0.1995 4.1763 29 1 3.9241 1.2367 3.9364 30 6 5.6419 -0.0715 3.9209 31 1 -0.3634 0.5641 0.8590 32 1 -0.3633 0.4619 -0.9181 33 1 -0.3634 -1.0259 0.0589 34 1 1.1334 1.4110 -3.4724 35 1 0.7374 -2.1443 1.9994 36 1 1.5295 -2.5968 0.4710 37 1 2.4628 -2.5817 1.9866 38 1 1.3564 -0.3317 4.2492 39 1 1.6967 -2.0778 4.0048 40 1 2.1239 -0.9823 6.4406 41 1 3.3273 -2.1243 5.7705 42 1 3.1918 2.5780 8.8870 43 1 4.7309 2.9826 9.6848 44 1 4.6644 2.8106 7.9145 45 1 4.2756 -0.6395 10.4147 46 1 4.5030 0.9679 11.1451 47 1 2.9647 0.5626 10.3473 48 1 6.5039 1.1226 8.0098 49 1 6.5700 1.2942 9.7805 50 1 6.3419 -0.3126 9.0501 51 1 5.8674 0.1033 2.8688 52 1 5.8712 -1.1064 4.1745 53 1 6.2445 0.5957 4.5372 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492307821.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:07 Heat of formation + Delta-G solvation = -134.874962 kcal Electronic energy + Delta-G solvation = -31680.598689 eV Core-core repulsion = 27551.787813 eV Total energy + Delta-G solvation = -4128.810876 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.06078 -41.14012 -39.31024 -37.52582 -37.08293 -35.14673 -34.79657 -32.94534 -32.37939 -31.12816 -28.35690 -28.26650 -27.74904 -27.31444 -27.17149 -25.02197 -23.63807 -22.72970 -21.61031 -20.27336 -19.85852 -18.91965 -18.41838 -18.22078 -17.47333 -17.33695 -17.09086 -16.29234 -16.10393 -15.90319 -15.77947 -15.27344 -14.90368 -14.70667 -14.61713 -14.34122 -14.24957 -14.04512 -13.63691 -13.62879 -13.49902 -13.30962 -13.06533 -12.98313 -12.93197 -12.90281 -12.83841 -12.81220 -12.69184 -12.62938 -12.52726 -12.37970 -12.25632 -12.19528 -12.07986 -11.93812 -11.80708 -11.36924 -11.21084 -11.04889 -10.59790 -10.45820 -9.80569 -9.30329 -8.15463 -6.28507 0.99120 1.43096 1.43857 1.53285 1.74965 1.78952 2.31145 2.49361 2.86536 3.14129 3.35146 3.45967 3.70801 3.77562 3.81713 3.96620 4.06330 4.18640 4.22425 4.34162 4.47531 4.51443 4.56930 4.62485 4.66968 4.70606 4.76187 4.76854 4.77721 4.82576 4.85405 4.89090 4.90204 4.93339 5.01474 5.03707 5.11525 5.12903 5.16359 5.18840 5.25821 5.29643 5.37396 5.47406 5.50458 5.56474 5.69244 6.02316 6.15029 6.43284 6.80645 6.85670 7.26682 7.33938 7.49914 8.91496 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.026540 B = 0.002387 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.755324 B =11729.618284 C =11909.892819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.258 3.742 3 H 0.008 0.992 4 C -0.536 4.536 5 H 0.067 0.933 6 C 0.013 3.987 7 N -0.922 5.922 8 Si 0.963 3.037 9 H -0.265 1.265 10 H -0.292 1.292 11 H -0.267 1.267 12 N -0.593 5.593 13 C 0.072 3.928 14 C 0.505 3.495 15 O -0.605 6.605 16 C -0.103 4.103 17 H 0.142 0.858 18 C -0.114 4.114 19 C 0.106 3.894 20 N -0.603 5.603 21 C 0.663 3.337 22 O -0.593 6.593 23 O -0.361 6.361 24 C 0.124 3.876 25 C -0.181 4.181 26 C -0.132 4.132 27 C -0.178 4.178 28 C 0.167 3.833 29 H 0.053 0.947 30 C -0.152 4.152 31 H 0.022 0.978 32 H 0.046 0.954 33 H 0.058 0.942 34 H 0.263 0.737 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.096 0.904 38 H 0.065 0.935 39 H 0.136 0.864 40 H 0.094 0.906 41 H 0.104 0.896 42 H 0.059 0.941 43 H 0.092 0.908 44 H 0.054 0.946 45 H 0.073 0.927 46 H 0.102 0.898 47 H 0.068 0.932 48 H 0.057 0.943 49 H 0.090 0.910 50 H 0.065 0.935 51 H 0.059 0.941 52 H 0.081 0.919 53 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.779 -10.804 25.264 27.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.156 3.844 3 H 0.026 0.974 4 C -0.575 4.575 5 H 0.085 0.915 6 C -0.187 4.187 7 N -0.561 5.561 8 Si 0.788 3.212 9 H -0.190 1.190 10 H -0.218 1.218 11 H -0.192 1.192 12 N -0.323 5.323 13 C -0.069 4.069 14 C 0.293 3.707 15 O -0.488 6.488 16 C -0.125 4.125 17 H 0.160 0.840 18 C -0.152 4.152 19 C -0.015 4.015 20 N -0.344 5.344 21 C 0.419 3.581 22 O -0.484 6.484 23 O -0.275 6.275 24 C 0.088 3.912 25 C -0.239 4.239 26 C -0.189 4.189 27 C -0.235 4.235 28 C 0.064 3.936 29 H 0.071 0.929 30 C -0.210 4.210 31 H 0.041 0.959 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.114 0.886 38 H 0.083 0.917 39 H 0.154 0.846 40 H 0.113 0.887 41 H 0.123 0.877 42 H 0.078 0.922 43 H 0.111 0.889 44 H 0.073 0.927 45 H 0.092 0.908 46 H 0.120 0.880 47 H 0.087 0.913 48 H 0.076 0.924 49 H 0.109 0.891 50 H 0.084 0.916 51 H 0.078 0.922 52 H 0.100 0.900 53 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.131 -9.780 25.134 27.151 hybrid contribution 0.258 0.659 -1.539 1.694 sum 3.389 -9.121 23.595 25.523 Atomic orbital electron populations 1.21787 0.97149 1.00181 0.99227 1.18537 0.91436 0.92544 0.81889 0.97354 1.21573 1.36238 1.08600 0.91055 0.91490 1.25787 0.95136 0.95446 1.02294 1.70135 1.45796 1.15475 1.24656 0.85501 0.78997 0.78421 0.78294 1.19007 1.21771 1.19190 1.48136 1.48650 1.13552 1.21914 1.22046 1.01777 0.80125 1.02990 1.20829 0.78444 0.86477 0.84942 1.90656 1.60223 1.19983 1.77909 1.22311 0.98999 0.99332 0.91861 0.84046 1.22937 0.95196 1.05031 0.92002 1.22661 0.90212 0.90365 0.98214 1.47379 1.44863 1.38799 1.03362 1.17616 0.79587 0.80000 0.80945 1.90893 1.37373 1.34163 1.85982 1.86300 1.66006 1.62025 1.13201 1.22443 0.93416 0.91281 0.84106 1.22483 1.02195 0.95208 1.03975 1.21862 1.02262 1.02761 0.92034 1.22457 0.94164 1.02896 1.04019 1.21146 0.95618 0.99023 0.77796 0.92867 1.22042 0.94338 1.02834 1.01752 0.95872 0.93472 0.92288 0.92818 0.90738 0.91272 0.88609 0.91667 0.84610 0.88734 0.87750 0.92205 0.88938 0.92668 0.90773 0.87979 0.91254 0.92434 0.89103 0.91578 0.92214 0.90013 0.92753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.76 9.12 71.98 0.66 -5.10 16 2 C 0.26 13.14 2.50 44.24 0.11 13.25 16 3 H 0.01 0.53 6.84 -2.39 -0.02 0.51 16 4 C -0.54 -28.46 8.01 25.60 0.20 -28.26 16 5 H 0.07 3.38 7.16 -2.91 -0.02 3.36 16 6 C 0.01 0.71 5.17 84.65 0.44 1.15 16 7 N -0.92 -54.32 12.16 21.45 0.26 -54.06 16 8 Si 0.96 42.56 29.55 68.60 2.03 44.58 16 9 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 10 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 11 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 12 N -0.59 -23.41 2.75 -826.81 -2.28 -25.68 16 13 C 0.07 1.91 7.97 127.77 1.02 2.93 16 14 C 0.50 20.06 7.05 87.66 0.62 20.67 16 15 O -0.61 -31.33 14.75 -3.03 -0.04 -31.38 16 16 C -0.10 -2.72 1.88 -10.35 -0.02 -2.74 16 17 H 0.14 2.84 6.98 -2.38 -0.02 2.82 16 18 C -0.11 -2.08 5.75 31.99 0.18 -1.90 16 19 C 0.11 1.78 6.94 86.79 0.60 2.38 16 20 N -0.60 -15.70 3.08 -917.42 -2.82 -18.52 16 21 C 0.66 19.13 7.72 129.79 1.00 20.13 16 22 O -0.59 -20.52 10.92 19.79 0.22 -20.31 16 23 O -0.36 -8.47 9.43 -55.41 -0.52 -9.00 16 24 C 0.12 2.32 1.13 -10.79 -0.01 2.31 16 25 C -0.18 -3.66 8.37 71.98 0.60 -3.06 16 26 C -0.13 -1.47 8.85 71.98 0.64 -0.83 16 27 C -0.18 -3.27 8.37 71.99 0.60 -2.67 16 28 C 0.17 5.10 2.88 45.34 0.13 5.24 16 29 H 0.05 2.16 6.80 -2.39 -0.02 2.14 16 30 C -0.15 -4.35 9.10 71.98 0.66 -3.69 16 31 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.05 2.43 6.84 -2.38 -0.02 2.41 16 33 H 0.06 2.35 7.56 -2.39 -0.02 2.33 16 34 H 0.26 14.72 8.31 -92.70 -0.77 13.95 16 35 H 0.07 1.55 7.79 -2.39 -0.02 1.53 16 36 H 0.07 2.03 6.92 -2.39 -0.02 2.01 16 37 H 0.10 1.74 6.06 -2.39 -0.01 1.73 16 38 H 0.06 1.47 8.04 -2.39 -0.02 1.46 16 39 H 0.14 1.44 6.79 -2.38 -0.02 1.43 16 40 H 0.09 1.39 8.05 -2.39 -0.02 1.37 16 41 H 0.10 1.17 8.14 -2.39 -0.02 1.16 16 42 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 44 H 0.05 1.52 5.88 -2.39 -0.01 1.51 16 45 H 0.07 0.73 8.14 -2.39 -0.02 0.72 16 46 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 47 H 0.07 0.75 8.14 -2.39 -0.02 0.74 16 48 H 0.06 1.46 5.88 -2.39 -0.01 1.44 16 49 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 50 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 51 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 52 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 53 H 0.05 1.73 6.89 -2.39 -0.02 1.71 16 Total: -1.00 -78.69 407.15 5.15 -73.54 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: 0.88 Total: 21.02 kcal Atomic # 6 Polarization: 12.37 SS G_CDS: 7.43 Total: 19.80 kcal Atomic # 7 Polarization: -93.43 SS G_CDS: -4.84 Total: -98.26 kcal Atomic # 8 Polarization: -60.33 SS G_CDS: -0.35 Total: -60.68 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.58 kcal Total: -78.69 5.15 -73.54 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492307821.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.340 kcal (2) G-P(sol) polarization free energy of solvation -78.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds