Wall clock time and date at job start Wed Apr 1 2020 00:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47288 * 2 1 4 4 C 1.50701 * 109.47211 * 239.99900 * 2 1 3 5 5 H 1.07999 * 119.99851 * 240.00228 * 4 2 1 6 6 C 1.37881 * 119.99719 * 59.99763 * 4 2 1 7 7 N 1.31510 * 120.00011 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 119.99750 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47053 * 89.99761 * 8 6 4 10 10 H 1.48495 * 109.46863 * 209.99994 * 8 6 4 11 11 H 1.48502 * 109.47111 * 329.99976 * 8 6 4 12 12 N 1.46502 * 109.47021 * 119.99777 * 2 1 3 13 13 C 1.46500 * 119.99782 * 60.00257 * 12 2 1 14 14 C 1.34773 * 120.00208 * 239.99667 * 12 2 1 15 15 O 1.21282 * 119.99690 * 0.02562 * 14 12 2 16 16 C 1.50692 * 120.00300 * 180.02562 * 14 12 2 17 17 H 1.09005 * 110.64244 * 336.96178 * 16 14 12 18 18 C 1.55160 * 110.72130 * 213.81993 * 16 14 12 19 19 C 1.54909 * 101.58338 * 277.13704 * 18 16 14 20 20 N 1.47425 * 104.83161 * 322.99084 * 19 18 16 21 21 C 1.34770 * 125.64510 * 203.85979 * 20 19 18 22 22 O 1.21513 * 119.99987 * 180.02562 * 21 20 19 23 23 O 1.34633 * 120.00297 * 0.02818 * 21 20 19 24 24 C 1.45208 * 117.00322 * 180.02562 * 23 21 20 25 25 C 1.52993 * 109.47221 * 59.99363 * 24 23 21 26 26 C 1.53000 * 109.46957 * 180.02562 * 24 23 21 27 27 C 1.52999 * 109.46559 * 299.99780 * 24 23 21 28 28 C 1.47022 * 108.70388 * 24.12921 * 20 19 18 29 29 H 1.09004 * 109.88094 * 239.52363 * 28 20 19 30 30 C 1.53000 * 109.88354 * 118.35576 * 28 20 19 31 31 H 1.09001 * 109.47221 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47112 * 300.00225 * 1 2 3 33 33 H 1.08997 * 109.47642 * 60.00331 * 1 2 3 34 34 H 0.97002 * 119.99715 * 179.97438 * 7 6 4 35 35 H 1.09001 * 109.46948 * 269.99550 * 13 12 2 36 36 H 1.08994 * 109.47392 * 29.99860 * 13 12 2 37 37 H 1.09006 * 109.47292 * 149.99731 * 13 12 2 38 38 H 1.09009 * 111.00043 * 159.06619 * 18 16 14 39 39 H 1.09002 * 111.00317 * 35.21955 * 18 16 14 40 40 H 1.08993 * 110.36437 * 204.14958 * 19 18 16 41 41 H 1.08996 * 110.36501 * 81.82941 * 19 18 16 42 42 H 1.09004 * 109.46727 * 60.00779 * 25 24 23 43 43 H 1.09000 * 109.47195 * 180.02562 * 25 24 23 44 44 H 1.08998 * 109.47528 * 300.00640 * 25 24 23 45 45 H 1.08993 * 109.47478 * 60.00060 * 26 24 23 46 46 H 1.09000 * 109.46759 * 179.97438 * 26 24 23 47 47 H 1.08998 * 109.47232 * 299.99166 * 26 24 23 48 48 H 1.08998 * 109.47475 * 59.99803 * 27 24 23 49 49 H 1.09000 * 109.47228 * 180.02562 * 27 24 23 50 50 H 1.09007 * 109.47347 * 299.99622 * 27 24 23 51 51 H 1.09006 * 109.47032 * 66.20812 * 30 28 20 52 52 H 1.09000 * 109.47292 * 186.20367 * 30 28 20 53 53 H 1.08996 * 109.46924 * 306.20915 * 30 28 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9426 0.8296 -2.6034 8 14 2.3213 -1.1204 -4.0080 9 1 1.3427 -2.1618 -4.4118 10 1 2.4864 -0.1415 -5.1123 11 1 3.6293 -1.7584 -3.7122 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4280 14 6 2.7932 -0.0356 2.0833 15 8 3.0858 1.1256 1.8916 16 6 3.2959 -0.7461 3.3135 17 1 2.6558 -1.5945 3.5559 18 6 3.3878 0.2328 4.5138 19 6 4.7595 0.9068 4.2612 20 7 5.6163 -0.1688 3.7296 21 6 6.9625 -0.2004 3.7851 22 8 7.5681 -1.1414 3.3116 23 8 7.6363 0.8107 4.3650 24 6 9.0847 0.7101 4.3881 25 6 9.6135 0.6324 2.9546 26 6 9.6704 1.9412 5.0825 27 6 9.4961 -0.5499 5.1524 28 6 4.7592 -1.1980 3.1233 29 1 4.9195 -2.1543 3.6212 30 6 5.0748 -1.3253 1.6316 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3634 0.5137 -0.8900 34 1 0.7086 1.1611 -3.4844 35 1 0.7375 -2.1443 1.9994 36 1 1.5295 -2.5968 0.4709 37 1 2.4628 -2.5819 1.9864 38 1 3.3867 -0.3083 5.4601 39 1 2.5810 0.9651 4.4834 40 1 5.1701 1.2927 5.1942 41 1 4.6593 1.7085 3.5296 42 1 9.3204 1.5301 2.4101 43 1 10.7007 0.5564 2.9720 44 1 9.1961 -0.2449 2.4603 45 1 9.2937 1.9960 6.1038 46 1 10.7576 1.8654 5.1002 47 1 9.3774 2.8390 4.5384 48 1 9.0787 -1.4272 4.6582 49 1 10.5833 -0.6253 5.1702 50 1 9.1194 -0.4946 6.1738 51 1 6.0859 -1.7128 1.5059 52 1 4.3636 -2.0082 1.1668 53 1 4.9997 -0.3458 1.1595 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492307822.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:11 Heat of formation + Delta-G solvation = -128.883649 kcal Electronic energy + Delta-G solvation = -32395.161762 eV Core-core repulsion = 28266.610689 eV Total energy + Delta-G solvation = -4128.551073 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.16639 -41.21630 -39.15261 -37.55365 -36.90450 -35.17892 -34.79182 -32.92878 -32.40997 -31.07556 -28.37050 -28.28641 -27.61863 -27.35842 -27.11559 -25.06010 -24.03858 -22.54220 -21.67379 -20.30716 -19.43979 -18.97904 -18.55584 -18.22686 -17.51901 -17.30759 -17.03677 -16.48696 -16.25809 -15.98532 -15.56677 -15.14934 -14.89482 -14.75230 -14.46930 -14.35364 -14.25889 -14.04889 -13.66763 -13.50897 -13.43295 -13.32655 -13.14600 -13.01420 -12.91080 -12.90575 -12.85225 -12.72182 -12.63405 -12.59729 -12.48273 -12.42411 -12.24030 -12.20361 -12.13812 -12.03180 -11.92892 -11.38064 -11.16013 -11.05513 -10.57552 -10.33196 -9.80571 -9.25671 -8.14235 -6.29453 1.04344 1.38552 1.40882 1.49747 1.74542 1.80974 2.31895 2.50145 2.86074 3.13989 3.40368 3.49204 3.65667 3.76020 3.80337 3.95093 4.10221 4.14409 4.21143 4.38631 4.44866 4.50171 4.51886 4.61505 4.64610 4.68481 4.74106 4.75834 4.78678 4.81157 4.84191 4.87721 4.88924 4.94322 4.98636 5.07024 5.10475 5.11950 5.19181 5.20357 5.25750 5.28185 5.36191 5.46397 5.51121 5.64830 5.70549 6.07883 6.19546 6.42243 6.79331 6.90083 7.25691 7.35269 7.54426 8.89710 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014795 B = 0.003161 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.054647 B = 8855.561116 C = 9755.994132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.266 3.734 3 H 0.006 0.994 4 C -0.532 4.532 5 H 0.060 0.940 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.957 3.043 9 H -0.266 1.266 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.598 5.598 13 C 0.073 3.927 14 C 0.511 3.489 15 O -0.595 6.595 16 C -0.117 4.117 17 H 0.151 0.849 18 C -0.100 4.100 19 C 0.103 3.897 20 N -0.600 5.600 21 C 0.664 3.336 22 O -0.588 6.588 23 O -0.368 6.368 24 C 0.122 3.878 25 C -0.182 4.182 26 C -0.134 4.134 27 C -0.175 4.175 28 C 0.176 3.824 29 H 0.116 0.884 30 C -0.161 4.161 31 H 0.047 0.953 32 H 0.021 0.979 33 H 0.064 0.936 34 H 0.263 0.737 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.091 0.909 38 H 0.124 0.876 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.051 0.949 42 H 0.050 0.950 43 H 0.095 0.905 44 H 0.058 0.942 45 H 0.074 0.926 46 H 0.105 0.895 47 H 0.061 0.939 48 H 0.061 0.939 49 H 0.092 0.908 50 H 0.066 0.934 51 H 0.060 0.940 52 H 0.078 0.922 53 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.723 -5.047 19.825 23.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.164 3.836 3 H 0.024 0.976 4 C -0.571 4.571 5 H 0.078 0.922 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.783 3.217 9 H -0.191 1.191 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.328 5.328 13 C -0.069 4.069 14 C 0.299 3.701 15 O -0.477 6.477 16 C -0.138 4.138 17 H 0.168 0.832 18 C -0.138 4.138 19 C -0.019 4.019 20 N -0.341 5.341 21 C 0.420 3.580 22 O -0.479 6.479 23 O -0.283 6.283 24 C 0.086 3.914 25 C -0.239 4.239 26 C -0.191 4.191 27 C -0.232 4.232 28 C 0.073 3.927 29 H 0.133 0.867 30 C -0.219 4.219 31 H 0.066 0.934 32 H 0.040 0.960 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.109 0.891 38 H 0.142 0.858 39 H 0.106 0.894 40 H 0.116 0.884 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.114 0.886 44 H 0.077 0.923 45 H 0.093 0.907 46 H 0.123 0.877 47 H 0.081 0.919 48 H 0.080 0.920 49 H 0.110 0.890 50 H 0.085 0.915 51 H 0.079 0.921 52 H 0.096 0.904 53 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 11.117 -4.605 19.448 22.870 hybrid contribution 0.142 0.112 -1.793 1.802 sum 11.259 -4.493 17.655 21.416 Atomic orbital electron populations 1.21857 0.97202 1.00083 0.99845 1.18436 0.91470 0.92028 0.81716 0.97596 1.21583 1.31452 1.12873 0.91179 0.92162 1.25672 0.95225 0.95638 1.01855 1.70019 1.37501 1.23899 1.24225 0.85566 0.78825 0.78378 0.78927 1.19104 1.21393 1.19867 1.48204 1.49061 1.13258 1.22251 1.21941 1.01429 0.80727 1.02804 1.20810 0.77800 0.86569 0.84891 1.90621 1.59534 1.19588 1.77939 1.22632 0.95900 1.01663 0.93620 0.83167 1.22715 0.96032 0.97906 0.97170 1.22443 0.90467 0.89829 0.99170 1.47360 1.01918 1.24738 1.60073 1.17595 0.81723 0.81228 0.77496 1.90862 1.67405 1.36863 1.52776 1.86323 1.23769 1.44551 1.73652 1.22456 0.73486 0.98757 0.96687 1.22486 1.03196 1.02455 0.95752 1.21873 1.01945 0.94459 1.00821 1.22438 1.03526 0.97089 1.00153 1.21417 0.86750 0.91423 0.93064 0.86663 1.22170 1.02646 1.01166 0.95909 0.93439 0.95990 0.91748 0.92795 0.91019 0.91435 0.89105 0.85786 0.89427 0.88413 0.93096 0.93068 0.88643 0.92293 0.90715 0.87685 0.91941 0.91959 0.88967 0.91489 0.92097 0.90363 0.95690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.20 8.97 71.98 0.65 -5.55 16 2 C 0.27 13.53 2.64 44.24 0.12 13.64 16 3 H 0.01 0.37 6.90 -2.39 -0.02 0.36 16 4 C -0.53 -28.66 7.99 25.60 0.20 -28.46 16 5 H 0.06 3.16 7.33 -2.91 -0.02 3.13 16 6 C 0.02 0.85 5.30 84.66 0.45 1.30 16 7 N -0.92 -53.14 11.32 21.45 0.24 -52.90 16 8 Si 0.96 43.61 29.54 68.60 2.03 45.64 16 9 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 10 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 11 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 12 N -0.60 -23.74 2.60 -826.82 -2.15 -25.89 16 13 C 0.07 2.09 8.35 127.77 1.07 3.16 16 14 C 0.51 19.50 4.57 87.65 0.40 19.90 16 15 O -0.60 -28.63 14.02 -3.04 -0.04 -28.67 16 16 C -0.12 -2.95 2.52 -10.35 -0.03 -2.97 16 17 H 0.15 2.58 6.34 -2.38 -0.02 2.56 16 18 C -0.10 -2.11 6.34 31.99 0.20 -1.91 16 19 C 0.10 2.73 6.51 86.86 0.57 3.29 16 20 N -0.60 -17.70 3.07 -918.24 -2.82 -20.51 16 21 C 0.66 20.95 7.72 129.79 1.00 21.95 16 22 O -0.59 -20.32 10.99 19.80 0.22 -20.10 16 23 O -0.37 -10.33 9.42 -55.42 -0.52 -10.85 16 24 C 0.12 2.67 1.13 -10.80 -0.01 2.66 16 25 C -0.18 -4.28 8.37 71.98 0.60 -3.67 16 26 C -0.13 -1.99 8.85 71.98 0.64 -1.35 16 27 C -0.17 -3.39 8.37 71.98 0.60 -2.79 16 28 C 0.18 4.82 3.39 45.34 0.15 4.97 16 29 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 30 C -0.16 -5.59 8.11 71.98 0.58 -5.01 16 31 H 0.05 2.02 7.67 -2.39 -0.02 2.00 16 32 H 0.02 0.94 8.14 -2.38 -0.02 0.92 16 33 H 0.06 3.42 6.07 -2.39 -0.01 3.41 16 34 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 35 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.07 2.16 7.02 -2.39 -0.02 2.14 16 37 H 0.09 1.93 5.63 -2.38 -0.01 1.91 16 38 H 0.12 1.63 8.14 -2.38 -0.02 1.61 16 39 H 0.09 1.98 8.01 -2.39 -0.02 1.96 16 40 H 0.10 2.11 8.05 -2.39 -0.02 2.09 16 41 H 0.05 1.74 6.94 -2.39 -0.02 1.72 16 42 H 0.05 1.26 8.14 -2.39 -0.02 1.25 16 43 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.06 1.76 5.88 -2.39 -0.01 1.75 16 45 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 48 H 0.06 1.57 5.88 -2.39 -0.01 1.56 16 49 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 50 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 51 H 0.06 2.18 7.03 -2.38 -0.02 2.16 16 52 H 0.08 2.59 6.56 -2.39 -0.02 2.57 16 53 H 0.02 1.07 7.01 -2.39 -0.02 1.05 16 Total: -1.00 -74.90 401.58 5.04 -69.86 By element: Atomic # 1 Polarization: 23.38 SS G_CDS: 0.89 Total: 24.27 kcal Atomic # 6 Polarization: 11.97 SS G_CDS: 7.19 Total: 19.16 kcal Atomic # 7 Polarization: -94.59 SS G_CDS: -4.72 Total: -99.31 kcal Atomic # 8 Polarization: -59.28 SS G_CDS: -0.35 Total: -59.63 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -74.90 5.04 -69.86 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492307822.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.023 kcal (2) G-P(sol) polarization free energy of solvation -74.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds