Wall clock time and date at job start Tue Mar 31 2020 23:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08991 * 109.58707 * 2 1 4 4 C 1.53191 * 109.58577 * 120.44359 * 2 1 3 5 5 C 1.53044 * 109.31383 * 174.43255 * 4 2 1 6 6 H 1.09002 * 109.45517 * 58.63078 * 5 4 2 7 7 C 1.50698 * 109.45842 * 178.60121 * 5 4 2 8 8 O 1.21283 * 120.00521 * 0.02829 * 7 5 4 9 9 N 1.34778 * 119.99997 * 180.02562 * 7 5 4 10 10 C 1.46494 * 120.00191 * 179.97438 * 9 7 5 11 11 C 1.53008 * 109.46942 * 180.02562 * 10 9 7 12 12 C 1.50708 * 109.46736 * 180.02562 * 11 10 9 13 13 H 1.07994 * 120.00003 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99500 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00069 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99787 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47158 * 89.99886 * 16 14 12 18 18 H 1.48497 * 109.47097 * 210.00061 * 16 14 12 19 19 H 1.48498 * 109.47138 * 329.99957 * 16 14 12 20 20 C 1.53037 * 109.52741 * 298.61561 * 5 4 2 21 21 C 1.53188 * 109.31477 * 61.37076 * 20 5 4 22 22 N 1.46929 * 108.77481 * 305.36489 * 21 20 5 23 23 C 1.34777 * 120.63132 * 233.63192 * 22 21 20 24 24 O 1.21513 * 120.00152 * 174.92944 * 23 22 21 25 25 O 1.34639 * 120.00057 * 354.92190 * 23 22 21 26 26 C 1.45198 * 117.00120 * 180.02562 * 25 23 22 27 27 C 1.53004 * 109.47123 * 60.00189 * 26 25 23 28 28 C 1.52998 * 109.47187 * 180.02562 * 26 25 23 29 29 C 1.53004 * 109.47191 * 300.00116 * 26 25 23 30 30 H 1.08999 * 109.47148 * 176.00240 * 1 2 3 31 31 H 1.09002 * 109.46790 * 296.00515 * 1 2 3 32 32 H 1.08995 * 109.46764 * 56.00478 * 1 2 3 33 33 H 1.09005 * 109.51316 * 54.47864 * 4 2 1 34 34 H 1.08996 * 109.48871 * 294.38069 * 4 2 1 35 35 H 0.97003 * 119.99650 * 359.97438 * 9 7 5 36 36 H 1.09003 * 109.47073 * 60.00453 * 10 9 7 37 37 H 1.08994 * 109.47433 * 299.99976 * 10 9 7 38 38 H 1.08989 * 109.47036 * 60.00484 * 11 10 9 39 39 H 1.08997 * 109.46886 * 299.99474 * 11 10 9 40 40 H 0.97001 * 119.99649 * 180.02562 * 15 14 12 41 41 H 1.09003 * 109.49907 * 181.32426 * 20 5 4 42 42 H 1.09003 * 109.49716 * 301.41515 * 20 5 4 43 43 H 1.09000 * 109.58667 * 65.14940 * 21 20 5 44 44 H 1.09000 * 109.59211 * 185.43447 * 21 20 5 45 45 H 1.09002 * 109.46598 * 60.00152 * 27 26 25 46 46 H 1.08996 * 109.47280 * 179.97438 * 27 26 25 47 47 H 1.08993 * 109.47281 * 300.00028 * 27 26 25 48 48 H 1.08998 * 109.47136 * 60.00140 * 28 26 25 49 49 H 1.08996 * 109.47144 * 180.02562 * 28 26 25 50 50 H 1.08997 * 109.46871 * 300.00104 * 28 26 25 51 51 H 1.09006 * 109.46591 * 60.00134 * 29 26 25 52 52 H 1.08996 * 109.47078 * 179.97438 * 29 26 25 53 53 H 1.08996 * 109.47103 * 300.00459 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0268 0.0000 4 6 2.0436 -0.7313 1.2443 5 6 3.5676 -0.8496 1.1690 6 1 4.0060 0.1460 1.0994 7 6 4.0795 -1.5381 2.4079 8 8 3.3023 -1.8991 3.2661 9 7 5.4011 -1.7528 2.5622 10 6 5.8988 -2.4216 3.7668 11 6 7.4225 -2.5389 3.6923 12 6 7.9345 -3.2276 4.9312 13 1 7.2423 -3.5489 5.6954 14 6 9.2866 -3.4463 5.0894 15 7 10.1294 -3.0545 4.1590 16 14 9.9212 -4.2992 6.6254 17 1 9.9632 -5.7657 6.3957 18 1 11.2876 -3.8074 6.9359 19 1 9.0174 -4.0024 7.7657 20 6 3.9569 -1.6657 -0.0657 21 6 3.4651 -0.9454 -1.3250 22 7 2.0226 -0.6981 -1.1954 23 6 1.1674 -1.1043 -2.1546 24 8 -0.0304 -0.9769 -1.9943 25 8 1.6401 -1.6511 -3.2905 26 6 0.6614 -2.0651 -4.2799 27 6 -0.1636 -0.8538 -4.7191 28 6 1.3815 -2.6590 -5.4921 29 6 -0.2651 -3.1194 -3.6707 30 1 -0.3633 -1.0252 -0.0716 31 1 -0.3633 0.4506 0.9237 32 1 -0.3633 0.5746 -0.8520 33 1 1.6032 -1.7274 1.2888 34 1 1.7659 -0.1701 2.1364 35 1 6.0227 -1.4644 1.8756 36 1 5.4604 -3.4171 3.8371 37 1 5.6222 -1.8399 4.6460 38 1 7.8606 -1.5434 3.6223 39 1 7.6995 -3.1206 2.8131 40 1 11.0806 -3.2087 4.2702 41 1 5.0413 -1.7696 -0.1060 42 1 3.4983 -2.6529 -0.0086 43 1 3.9904 0.0038 -1.4317 44 1 3.6541 -1.5679 -2.1995 45 1 0.4965 -0.1028 -5.1532 46 1 -0.8980 -1.1645 -5.4622 47 1 -0.6767 -0.4311 -3.8554 48 1 1.9690 -3.5221 -5.1789 49 1 0.6468 -2.9694 -6.2350 50 1 2.0418 -1.9083 -5.9262 51 1 -0.7781 -2.6966 -2.8068 52 1 -1.0000 -3.4299 -4.4132 53 1 0.3227 -3.9823 -3.3577 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492480322.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:50 Heat of formation + Delta-G solvation = -146.836713 kcal Electronic energy + Delta-G solvation = -30803.406658 eV Core-core repulsion = 26674.077082 eV Total energy + Delta-G solvation = -4129.329576 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.14402 -41.03057 -39.44311 -37.51965 -36.59730 -35.26393 -34.87092 -33.96380 -33.33582 -31.43121 -28.71099 -28.32028 -28.25291 -27.22852 -25.78240 -24.12331 -23.45444 -22.75533 -21.75214 -20.97850 -20.25082 -18.59015 -18.54924 -17.94022 -17.58145 -17.25067 -16.77523 -16.51578 -16.47220 -16.36136 -15.61180 -15.53210 -15.19368 -15.02444 -14.82581 -14.67971 -14.45868 -14.28573 -13.95342 -13.60684 -13.50774 -13.22366 -13.19258 -13.10594 -13.00312 -12.93799 -12.83436 -12.72818 -12.62908 -12.53924 -12.40846 -12.23237 -12.08912 -12.00554 -11.78209 -11.73527 -11.58595 -11.45148 -11.27971 -10.77157 -10.60218 -10.28634 -9.99798 -9.68126 -8.24263 -6.34189 1.16491 1.41575 1.41714 1.53091 1.66462 1.81684 2.26073 2.45542 2.84038 3.10478 3.55340 3.67808 3.72412 3.80284 3.85058 3.94266 3.99739 4.11846 4.23451 4.33799 4.43489 4.48890 4.52940 4.54979 4.62846 4.65288 4.66716 4.72885 4.80515 4.81014 4.86322 4.87193 4.89599 4.91996 4.96481 5.07569 5.11373 5.14903 5.27196 5.31723 5.32320 5.34525 5.39461 5.50912 5.54076 5.59611 5.64730 5.79492 6.17030 6.40481 6.65819 6.78901 7.31290 7.34941 7.35629 8.87276 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.020084 B = 0.001999 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.841258 B =14006.997898 C =14809.321271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.164 3.836 3 H 0.104 0.896 4 C -0.104 4.104 5 C -0.097 4.097 6 H 0.132 0.868 7 C 0.508 3.492 8 O -0.592 6.592 9 N -0.715 5.715 10 C 0.140 3.860 11 C 0.024 3.976 12 C -0.548 4.548 13 H 0.056 0.944 14 C 0.008 3.992 15 N -0.924 5.924 16 Si 0.963 3.037 17 H -0.273 1.273 18 H -0.279 1.279 19 H -0.268 1.268 20 C -0.122 4.122 21 C 0.118 3.882 22 N -0.595 5.595 23 C 0.646 3.354 24 O -0.579 6.579 25 O -0.370 6.370 26 C 0.126 3.874 27 C -0.176 4.176 28 C -0.136 4.136 29 C -0.179 4.179 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.049 0.951 34 H 0.083 0.917 35 H 0.412 0.588 36 H 0.041 0.959 37 H 0.044 0.956 38 H 0.011 0.989 39 H 0.010 0.990 40 H 0.266 0.734 41 H 0.102 0.898 42 H 0.053 0.947 43 H 0.102 0.898 44 H 0.100 0.900 45 H 0.062 0.938 46 H 0.086 0.914 47 H 0.064 0.936 48 H 0.065 0.935 49 H 0.099 0.901 50 H 0.070 0.930 51 H 0.063 0.937 52 H 0.087 0.913 53 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.674 7.232 -22.041 29.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.063 3.937 3 H 0.122 0.878 4 C -0.143 4.143 5 C -0.118 4.118 6 H 0.150 0.850 7 C 0.296 3.704 8 O -0.473 6.473 9 N -0.365 5.365 10 C 0.016 3.984 11 C -0.014 4.014 12 C -0.586 4.586 13 H 0.074 0.926 14 C -0.191 4.191 15 N -0.564 5.564 16 Si 0.787 3.213 17 H -0.198 1.198 18 H -0.204 1.204 19 H -0.192 1.192 20 C -0.161 4.161 21 C -0.004 4.004 22 N -0.335 5.335 23 C 0.401 3.599 24 O -0.470 6.470 25 O -0.285 6.285 26 C 0.090 3.910 27 C -0.233 4.233 28 C -0.193 4.193 29 C -0.236 4.236 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.101 0.899 35 H 0.248 0.752 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.029 0.971 39 H 0.028 0.972 40 H 0.075 0.925 41 H 0.121 0.879 42 H 0.072 0.928 43 H 0.120 0.880 44 H 0.118 0.882 45 H 0.081 0.919 46 H 0.105 0.895 47 H 0.083 0.917 48 H 0.084 0.916 49 H 0.117 0.883 50 H 0.089 0.911 51 H 0.082 0.918 52 H 0.106 0.894 53 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.407 6.983 -21.504 29.155 hybrid contribution 0.762 -0.639 0.856 1.312 sum -17.645 6.344 -20.649 27.892 Atomic orbital electron populations 1.22096 0.92698 1.02662 1.01129 1.21363 0.95700 0.95508 0.81173 0.87812 1.21763 0.93265 1.01263 0.97964 1.21359 0.97284 1.01713 0.91408 0.85005 1.21304 0.81810 0.78634 0.88636 1.90662 1.56958 1.53667 1.46046 1.46145 1.07718 1.59782 1.22901 1.21192 0.95542 0.95296 0.86379 1.19123 0.89257 0.96411 0.96563 1.21470 0.92767 1.38952 1.05411 0.92574 1.25838 0.97187 0.96264 0.99815 1.70043 1.03171 1.47709 1.35435 0.85482 0.77637 0.78741 0.79413 1.19839 1.20441 1.19239 1.21931 1.03058 0.98448 0.92659 1.21846 0.78366 1.02235 0.97969 1.47224 1.07649 1.59692 1.18982 1.18285 0.84177 0.76909 0.80489 1.90958 1.14980 1.60836 1.80200 1.86304 1.41811 1.73797 1.26611 1.22332 0.87562 0.94756 0.86342 1.22437 1.00671 0.97378 1.02829 1.21873 1.01581 1.01366 0.94493 1.22462 1.00143 0.98148 1.02881 0.93114 0.92339 0.91544 0.93243 0.89859 0.75191 0.94013 0.93779 0.97076 0.97168 0.92528 0.87923 0.92778 0.88022 0.88182 0.91945 0.89516 0.91664 0.91617 0.88259 0.91050 0.91844 0.89384 0.92672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.64 7.59 71.98 0.55 -2.09 16 2 C 0.16 2.95 3.49 44.98 0.16 3.10 16 3 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 4 C -0.10 -2.25 3.94 30.67 0.12 -2.13 16 5 C -0.10 -1.97 2.49 -11.51 -0.03 -2.00 16 6 H 0.13 1.90 8.14 -2.39 -0.02 1.88 16 7 C 0.51 15.91 7.15 87.66 0.63 16.54 16 8 O -0.59 -24.04 15.98 -3.04 -0.05 -24.09 16 9 N -0.71 -23.17 5.44 -463.06 -2.52 -25.69 16 10 C 0.14 5.90 5.61 86.38 0.48 6.38 16 11 C 0.02 1.18 5.09 29.85 0.15 1.33 16 12 C -0.55 -30.32 9.11 25.60 0.23 -30.09 16 13 H 0.06 3.06 7.74 -2.91 -0.02 3.04 16 14 C 0.01 0.44 5.46 84.66 0.46 0.90 16 15 N -0.92 -53.32 13.29 21.45 0.28 -53.04 16 16 Si 0.96 43.32 29.54 68.60 2.03 45.35 16 17 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 18 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 19 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 20 C -0.12 -2.10 5.27 30.67 0.16 -1.94 16 21 C 0.12 1.65 6.43 86.36 0.56 2.21 16 22 N -0.59 -11.08 2.97 -925.23 -2.75 -13.83 16 23 C 0.65 14.22 7.64 129.79 0.99 15.21 16 24 O -0.58 -14.56 7.28 19.80 0.14 -14.41 16 25 O -0.37 -7.30 8.55 -55.49 -0.47 -7.77 16 26 C 0.13 2.00 1.13 -10.79 -0.01 1.99 16 27 C -0.18 -2.61 8.37 71.98 0.60 -2.01 16 28 C -0.14 -1.41 8.85 71.98 0.64 -0.77 16 29 C -0.18 -3.01 8.37 71.98 0.60 -2.41 16 30 H 0.05 1.28 6.73 -2.39 -0.02 1.27 16 31 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.07 1.45 6.76 -2.39 -0.02 1.43 16 33 H 0.05 1.34 8.13 -2.38 -0.02 1.32 16 34 H 0.08 1.87 8.07 -2.39 -0.02 1.85 16 35 H 0.41 10.91 7.87 -92.71 -0.73 10.18 16 36 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 41 H 0.10 1.47 7.53 -2.39 -0.02 1.45 16 42 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.10 1.37 6.97 -2.39 -0.02 1.36 16 45 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.09 0.93 8.14 -2.39 -0.02 0.92 16 47 H 0.06 1.30 5.88 -2.39 -0.01 1.29 16 48 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 49 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 50 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 51 H 0.06 1.41 5.88 -2.38 -0.01 1.39 16 52 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 53 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -70.98 410.51 3.11 -67.87 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: 0.15 Total: 21.39 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: 6.29 Total: 4.23 kcal Atomic # 7 Polarization: -87.57 SS G_CDS: -4.98 Total: -92.56 kcal Atomic # 8 Polarization: -45.90 SS G_CDS: -0.38 Total: -46.28 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -70.98 3.11 -67.87 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492480322.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.970 kcal (2) G-P(sol) polarization free energy of solvation -70.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds