Wall clock time and date at job start Tue Mar 31 2020 23:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47120 * 2 1 4 4 C 1.50698 * 109.47107 * 240.00029 * 2 1 3 5 5 H 1.08005 * 120.00134 * 335.15284 * 4 2 1 6 6 C 1.37879 * 120.00282 * 155.15314 * 4 2 1 7 7 N 1.31513 * 120.00041 * 5.34423 * 6 4 2 8 8 Si 1.86802 * 120.00077 * 185.33800 * 6 4 2 9 9 H 1.48503 * 109.47024 * 180.02562 * 8 6 4 10 10 H 1.48502 * 109.47210 * 299.99904 * 8 6 4 11 11 H 1.48498 * 109.47037 * 60.00424 * 8 6 4 12 12 N 1.46497 * 109.47212 * 120.00218 * 2 1 3 13 13 C 1.34780 * 119.99771 * 274.99543 * 12 2 1 14 14 O 1.21280 * 120.00140 * 0.02562 * 13 12 2 15 15 C 1.50703 * 120.00143 * 179.97438 * 13 12 2 16 16 H 1.08996 * 109.46036 * 299.97768 * 15 13 12 17 17 C 1.53038 * 109.45767 * 59.93474 * 15 13 12 18 18 C 1.53186 * 109.31407 * 181.38478 * 17 15 13 19 19 N 1.46928 * 108.77799 * 305.36951 * 18 17 15 20 20 C 1.34775 * 120.63117 * 233.63068 * 19 18 17 21 21 O 1.21509 * 120.00243 * 185.62592 * 20 19 18 22 22 O 1.34643 * 119.99638 * 5.62478 * 20 19 18 23 23 C 1.45207 * 116.99653 * 179.97438 * 22 20 19 24 24 C 1.53005 * 109.46821 * 60.00319 * 23 22 20 25 25 C 1.52996 * 109.46815 * 179.97438 * 23 22 20 26 26 C 1.53001 * 109.47178 * 300.00090 * 23 22 20 27 27 C 1.46926 * 118.73896 * 53.60494 * 19 18 17 28 28 H 1.08995 * 109.58670 * 66.18056 * 27 19 18 29 29 C 1.53002 * 109.70058 * 186.53927 * 27 19 18 30 30 C 1.53038 * 109.46257 * 180.02562 * 15 13 12 31 31 H 1.09002 * 109.47399 * 295.05133 * 1 2 3 32 32 H 1.09006 * 109.47088 * 55.04990 * 1 2 3 33 33 H 1.09004 * 109.47391 * 175.05122 * 1 2 3 34 34 H 0.97003 * 119.99606 * 355.03863 * 7 6 4 35 35 H 0.96998 * 120.00763 * 94.99825 * 12 2 1 36 36 H 1.09000 * 109.49917 * 301.34097 * 17 15 13 37 37 H 1.09003 * 109.50138 * 61.43335 * 17 15 13 38 38 H 1.08998 * 109.59192 * 185.57360 * 18 17 15 39 39 H 1.09010 * 109.70367 * 65.22270 * 18 17 15 40 40 H 1.08993 * 109.47469 * 59.99663 * 24 23 22 41 41 H 1.08999 * 109.46965 * 180.02562 * 24 23 22 42 42 H 1.09006 * 109.46900 * 299.99532 * 24 23 22 43 43 H 1.09002 * 109.46703 * 60.00778 * 25 23 22 44 44 H 1.09008 * 109.46705 * 179.97438 * 25 23 22 45 45 H 1.08993 * 109.47251 * 300.00200 * 25 23 22 46 46 H 1.09000 * 109.47005 * 60.00108 * 26 23 22 47 47 H 1.09000 * 109.46785 * 179.97438 * 26 23 22 48 48 H 1.08997 * 109.47058 * 300.00330 * 26 23 22 49 49 H 1.09009 * 109.46840 * 172.26756 * 29 27 19 50 50 H 1.08995 * 109.47431 * 292.26251 * 29 27 19 51 51 H 1.09001 * 109.47317 * 52.27142 * 29 27 19 52 52 H 1.08999 * 109.50135 * 298.57341 * 30 15 13 53 53 H 1.09009 * 109.49258 * 58.63057 * 30 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 1.4121 -1.4468 -1.7199 6 6 3.2836 -0.4203 -1.7315 7 7 4.0802 0.3971 -1.0782 8 14 3.8476 -1.1885 -3.3381 9 1 5.2205 -0.7200 -3.6557 10 1 3.8480 -2.6677 -3.2063 11 1 2.9229 -0.7890 -4.4292 12 7 2.0183 -0.6906 1.1961 13 6 2.1471 -0.0182 2.3571 14 8 1.8583 1.1584 2.4117 15 6 2.6489 -0.7288 3.5877 16 1 1.9756 -1.5502 3.8327 17 6 4.0510 -1.2813 3.3213 18 6 4.5438 -2.0324 4.5621 19 7 4.4591 -1.1353 5.7227 20 6 5.5365 -0.9183 6.5029 21 8 5.4292 -0.2570 7.5166 22 8 6.7316 -1.4344 6.1590 23 6 7.8480 -1.1597 7.0459 24 6 7.5436 -1.7190 8.4371 25 6 9.1118 -1.8233 6.4954 26 6 8.0646 0.3520 7.1401 27 6 3.1778 -0.4789 6.0162 28 1 2.4407 -1.2285 6.3039 29 6 3.3616 0.5241 7.1569 30 6 2.6999 0.2547 4.7592 31 1 -0.3634 0.4351 0.9310 32 1 -0.3633 0.5887 -0.8424 33 1 -0.3634 -1.0238 -0.0887 34 1 3.7618 0.8519 -0.2827 35 1 2.2490 -1.6318 1.1526 36 1 4.0178 -1.9638 2.4721 37 1 4.7306 -0.4581 3.1006 38 1 5.5782 -2.3426 4.4147 39 1 3.9200 -2.9100 4.7324 40 1 7.3892 -2.7959 8.3701 41 1 8.3814 -1.5124 9.1031 42 1 6.6430 -1.2466 8.8296 43 1 9.3289 -1.4251 5.5041 44 1 9.9500 -1.6167 7.1610 45 1 8.9572 -2.9001 6.4286 46 1 7.1641 0.8243 7.5325 47 1 8.9024 0.5581 7.8062 48 1 8.2814 0.7504 6.1489 49 1 2.4478 1.1055 7.2801 50 1 3.5784 -0.0120 8.0808 51 1 4.1892 1.1935 6.9223 52 1 3.3918 1.0637 4.5252 53 1 1.7052 0.6655 4.9328 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492660545.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:05 Heat of formation + Delta-G solvation = -148.929774 kcal Electronic energy + Delta-G solvation = -31905.872483 eV Core-core repulsion = 27776.452145 eV Total energy + Delta-G solvation = -4129.420338 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.16087 -40.95819 -39.45495 -37.58011 -36.81356 -35.27871 -34.37854 -33.73183 -33.37450 -31.16098 -28.70095 -28.34408 -28.27028 -26.78811 -26.28624 -24.23689 -23.70239 -22.69355 -21.61690 -20.84496 -20.28201 -19.29076 -18.60816 -17.77820 -17.66077 -17.25782 -16.69995 -16.47199 -15.99961 -15.63480 -15.60549 -15.47139 -15.34692 -15.09493 -14.92403 -14.77784 -14.48971 -14.09451 -13.68468 -13.58950 -13.55538 -13.22349 -13.10490 -13.06758 -13.00551 -12.91366 -12.83937 -12.74020 -12.66656 -12.56841 -12.43249 -12.12243 -12.08372 -12.04553 -11.88760 -11.81587 -11.69309 -11.31083 -10.94515 -10.72898 -10.52831 -10.33317 -9.73825 -9.63345 -8.68773 -6.49977 1.13834 1.57272 1.62792 1.77525 1.83082 1.85270 2.52490 2.55967 2.79902 3.26469 3.57333 3.69207 3.77533 3.78934 3.83259 3.90361 3.97425 4.10668 4.20008 4.28613 4.45310 4.46883 4.51847 4.58203 4.62359 4.64270 4.68406 4.71189 4.74405 4.76317 4.78034 4.83738 4.85658 4.89520 4.92341 5.04370 5.08707 5.11841 5.20395 5.25538 5.29334 5.30454 5.30778 5.36461 5.51143 5.59629 5.76146 5.99836 6.13308 6.36869 6.45899 7.01653 7.31945 7.39162 7.56068 8.66701 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013619 B = 0.002994 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.397641 B = 9350.300810 C =10794.928077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.237 3.763 3 H 0.000 1.000 4 C -0.613 4.613 5 H 0.063 0.937 6 C -0.017 4.017 7 N -0.919 5.919 8 Si 1.118 2.882 9 H -0.291 1.291 10 H -0.261 1.261 11 H -0.273 1.273 12 N -0.699 5.699 13 C 0.495 3.505 14 O -0.609 6.609 15 C -0.097 4.097 16 H 0.130 0.870 17 C -0.117 4.117 18 C 0.122 3.878 19 N -0.595 5.595 20 C 0.647 3.353 21 O -0.576 6.576 22 O -0.373 6.373 23 C 0.125 3.875 24 C -0.174 4.174 25 C -0.137 4.137 26 C -0.180 4.180 27 C 0.165 3.835 28 H 0.107 0.893 29 C -0.128 4.128 30 C -0.101 4.101 31 H 0.030 0.970 32 H 0.050 0.950 33 H 0.060 0.940 34 H 0.256 0.744 35 H 0.398 0.602 36 H 0.090 0.910 37 H 0.038 0.962 38 H 0.097 0.903 39 H 0.107 0.893 40 H 0.063 0.937 41 H 0.088 0.912 42 H 0.065 0.935 43 H 0.060 0.940 44 H 0.102 0.898 45 H 0.072 0.928 46 H 0.064 0.936 47 H 0.091 0.909 48 H 0.049 0.951 49 H 0.060 0.940 50 H 0.075 0.925 51 H 0.042 0.958 52 H 0.039 0.961 53 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.831 -10.395 17.802 21.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.135 3.865 3 H 0.018 0.982 4 C -0.651 4.651 5 H 0.082 0.918 6 C -0.219 4.219 7 N -0.554 5.554 8 Si 0.939 3.061 9 H -0.217 1.217 10 H -0.185 1.185 11 H -0.198 1.198 12 N -0.347 5.347 13 C 0.282 3.718 14 O -0.492 6.492 15 C -0.118 4.118 16 H 0.147 0.853 17 C -0.156 4.156 18 C 0.000 4.000 19 N -0.336 5.336 20 C 0.402 3.598 21 O -0.467 6.467 22 O -0.288 6.288 23 C 0.089 3.911 24 C -0.231 4.231 25 C -0.194 4.194 26 C -0.237 4.237 27 C 0.064 3.936 28 H 0.125 0.875 29 C -0.186 4.186 30 C -0.140 4.140 31 H 0.050 0.950 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.233 0.767 36 H 0.109 0.891 37 H 0.057 0.943 38 H 0.116 0.884 39 H 0.125 0.875 40 H 0.082 0.918 41 H 0.107 0.893 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.120 0.880 45 H 0.091 0.909 46 H 0.083 0.917 47 H 0.109 0.891 48 H 0.068 0.932 49 H 0.079 0.921 50 H 0.094 0.906 51 H 0.061 0.939 52 H 0.058 0.942 53 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.940 -9.497 17.124 20.775 hybrid contribution -1.181 0.641 0.697 1.514 sum 5.758 -8.855 17.821 20.717 Atomic orbital electron populations 1.21872 0.96406 1.01101 0.99397 1.18628 0.91543 0.92458 0.83834 0.98196 1.22364 1.04844 1.26587 1.11287 0.91848 1.27422 0.93750 0.95662 1.05047 1.70901 1.37559 1.27766 1.19140 0.82923 0.75567 0.76336 0.71249 1.21734 1.18546 1.19788 1.47181 1.64249 1.13980 1.09334 1.21385 0.77192 0.87127 0.86077 1.90592 1.53930 1.18420 1.86253 1.21353 0.98742 0.99669 0.92069 0.85257 1.21823 0.94210 1.00276 0.99301 1.21814 1.04009 0.91850 0.82295 1.47245 1.08504 1.48537 1.29297 1.18240 0.81042 0.78224 0.82249 1.90926 1.84883 1.43880 1.27019 1.86321 1.16999 1.71793 1.53663 1.22364 0.83488 0.95929 0.89351 1.22426 1.04116 1.01310 0.95277 1.21882 0.93831 1.01361 1.02285 1.22474 1.03917 0.94870 1.02463 1.21351 0.82730 0.95206 0.94320 0.87492 1.22072 1.00408 0.98365 0.97708 1.21737 1.02158 0.96960 0.93137 0.95040 0.93078 0.92132 0.93367 0.76682 0.89141 0.94336 0.88423 0.87537 0.91798 0.89304 0.91588 0.92082 0.87969 0.90901 0.91738 0.89057 0.93175 0.92098 0.90635 0.93916 0.94225 0.89824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.56 9.46 71.98 0.68 -4.88 16 2 C 0.24 11.83 2.13 44.24 0.09 11.93 16 3 H 0.00 0.00 6.37 -2.39 -0.02 -0.01 16 4 C -0.61 -31.70 8.50 25.60 0.22 -31.48 16 5 H 0.06 3.14 7.81 -2.91 -0.02 3.12 16 6 C -0.02 -0.91 5.45 84.66 0.46 -0.45 16 7 N -0.92 -54.48 13.63 21.45 0.29 -54.19 16 8 Si 1.12 46.58 29.91 68.60 2.05 48.63 16 9 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 10 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 11 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 12 N -0.70 -29.73 4.95 -446.11 -2.21 -31.94 16 13 C 0.49 20.43 7.12 87.66 0.62 21.05 16 14 O -0.61 -30.73 15.64 -3.03 -0.05 -30.78 16 15 C -0.10 -2.82 2.49 -11.51 -0.03 -2.85 16 16 H 0.13 2.82 8.14 -2.39 -0.02 2.80 16 17 C -0.12 -3.21 5.27 30.67 0.16 -3.05 16 18 C 0.12 2.57 6.46 86.36 0.56 3.12 16 19 N -0.60 -14.53 2.97 -925.23 -2.75 -17.28 16 20 C 0.65 17.43 7.53 129.79 0.98 18.41 16 21 O -0.58 -16.67 7.46 19.81 0.15 -16.52 16 22 O -0.37 -9.27 8.53 -55.52 -0.47 -9.75 16 23 C 0.12 2.48 1.13 -10.79 -0.01 2.47 16 24 C -0.17 -3.07 8.37 71.98 0.60 -2.47 16 25 C -0.14 -1.96 8.85 71.98 0.64 -1.33 16 26 C -0.18 -3.78 8.37 71.98 0.60 -3.18 16 27 C 0.17 3.85 3.48 44.97 0.16 4.00 16 28 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 29 C -0.13 -3.17 7.62 71.98 0.55 -2.62 16 30 C -0.10 -2.92 3.94 30.67 0.12 -2.80 16 31 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 33 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.26 16.06 6.77 -92.71 -0.63 15.43 16 35 H 0.40 14.98 7.99 -92.71 -0.74 14.24 16 36 H 0.09 2.39 7.52 -2.39 -0.02 2.37 16 37 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.10 2.03 6.92 -2.39 -0.02 2.02 16 39 H 0.11 1.59 8.14 -2.38 -0.02 1.57 16 40 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.07 1.49 5.88 -2.38 -0.01 1.48 16 43 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 45 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.06 1.68 5.88 -2.39 -0.01 1.67 16 47 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 48 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 49 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 50 H 0.07 1.89 6.70 -2.39 -0.02 1.88 16 51 H 0.04 1.27 6.81 -2.39 -0.02 1.25 16 52 H 0.04 1.41 8.13 -2.39 -0.02 1.39 16 53 H 0.08 2.41 8.07 -2.38 -0.02 2.39 16 Total: -1.00 -71.14 407.58 3.70 -67.44 By element: Atomic # 1 Polarization: 38.20 SS G_CDS: 0.29 Total: 38.49 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: 6.40 Total: 5.88 kcal Atomic # 7 Polarization: -98.74 SS G_CDS: -4.67 Total: -103.41 kcal Atomic # 8 Polarization: -56.67 SS G_CDS: -0.37 Total: -57.04 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.05 Total: 48.63 kcal Total: -71.14 3.70 -67.44 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492660545.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.488 kcal (2) G-P(sol) polarization free energy of solvation -71.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds