Wall clock time and date at job start Wed Apr 1 2020 00:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 110.00398 * 2 1 4 4 C 1.54341 * 109.98715 * 238.95887 * 2 1 3 5 5 H 1.09006 * 110.84257 * 100.20080 * 4 2 1 6 6 C 1.50694 * 110.66909 * 337.05196 * 4 2 1 7 7 O 1.21284 * 119.99823 * 279.73864 * 6 4 2 8 8 N 1.34773 * 120.00220 * 99.74253 * 6 4 2 9 9 C 1.46503 * 119.99987 * 179.97438 * 8 6 4 10 10 C 1.53005 * 109.47008 * 179.97438 * 9 8 6 11 11 C 1.52998 * 109.47007 * 180.02562 * 10 9 8 12 12 C 1.50707 * 109.46861 * 180.02562 * 11 10 9 13 13 H 1.07997 * 119.99807 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99796 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99766 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99866 * 179.97438 * 14 12 11 17 17 H 1.48489 * 109.47256 * 59.99937 * 16 14 12 18 18 H 1.48506 * 109.46885 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.46780 * 299.99597 * 16 14 12 20 20 C 1.55153 * 103.02108 * 218.66492 * 4 2 1 21 21 C 1.54912 * 101.58253 * 35.30990 * 20 4 2 22 22 N 1.47024 * 109.88277 * 121.09827 * 2 1 3 23 23 C 1.34771 * 125.64675 * 298.39046 * 22 2 1 24 24 O 1.21512 * 120.00047 * 359.71907 * 23 22 2 25 25 O 1.34640 * 120.00171 * 179.71640 * 23 22 2 26 26 C 1.45196 * 117.00168 * 179.97438 * 25 23 22 27 27 C 1.52995 * 109.47073 * 60.00584 * 26 25 23 28 28 C 1.53001 * 109.47438 * 300.00344 * 26 25 23 29 29 C 1.53007 * 109.47030 * 180.02562 * 26 25 23 30 30 H 1.09006 * 109.47059 * 304.78266 * 1 2 3 31 31 H 1.08996 * 109.47437 * 64.78519 * 1 2 3 32 32 H 1.09001 * 109.47320 * 184.79006 * 1 2 3 33 33 H 0.97006 * 120.00047 * 359.97438 * 8 6 4 34 34 H 1.08998 * 109.47199 * 299.99078 * 9 8 6 35 35 H 1.08998 * 109.47086 * 60.00158 * 9 8 6 36 36 H 1.09002 * 109.47107 * 299.99841 * 10 9 8 37 37 H 1.09003 * 109.47110 * 59.99430 * 10 9 8 38 38 H 1.09002 * 109.46952 * 299.99807 * 11 10 9 39 39 H 1.08992 * 109.47509 * 60.00120 * 11 10 9 40 40 H 0.97003 * 119.99210 * 180.02562 * 15 14 12 41 41 H 1.09000 * 111.00615 * 277.23579 * 20 4 2 42 42 H 1.09000 * 111.00706 * 153.38223 * 20 4 2 43 43 H 1.08995 * 110.36829 * 204.14872 * 21 20 4 44 44 H 1.08999 * 110.45815 * 81.87527 * 21 20 4 45 45 H 1.09008 * 109.47087 * 299.99916 * 27 26 25 46 46 H 1.09003 * 109.47261 * 179.97438 * 27 26 25 47 47 H 1.08996 * 109.47662 * 59.99518 * 27 26 25 48 48 H 1.09003 * 109.47336 * 179.97438 * 28 26 25 49 49 H 1.08998 * 109.46815 * 299.99741 * 28 26 25 50 50 H 1.08997 * 109.47313 * 59.99801 * 28 26 25 51 51 H 1.08996 * 109.46937 * 300.00011 * 29 26 25 52 52 H 1.09000 * 109.46680 * 60.00920 * 29 26 25 53 53 H 1.09003 * 109.46944 * 180.02562 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0575 -0.7479 -1.2427 5 1 2.3596 -0.0450 -2.0192 6 6 1.0192 -1.7055 -1.7678 7 8 0.8696 -2.7871 -1.2397 8 7 0.2568 -1.3602 -2.8242 9 6 -0.7522 -2.2914 -3.3349 10 6 -1.4725 -1.6591 -4.5276 11 6 -2.5268 -2.6314 -5.0606 12 6 -3.2358 -2.0088 -6.2357 13 1 -2.9621 -1.0186 -6.5687 14 6 -4.2338 -2.7035 -6.8857 15 7 -4.5667 -3.9095 -6.4804 16 14 -5.1131 -1.9315 -8.3418 17 1 -4.1288 -1.6320 -9.4124 18 1 -6.1363 -2.8753 -8.8592 19 1 -5.7738 -0.6734 -7.9107 20 6 3.2862 -1.5185 -0.6916 21 6 2.8099 -1.8826 0.7368 22 7 2.0300 -0.7141 1.1839 23 6 1.8074 -0.3621 2.4656 24 8 1.1463 0.6256 2.7184 25 8 2.3175 -1.1048 3.4661 26 6 2.0381 -0.6659 4.8216 27 6 0.5255 -0.6507 5.0511 28 6 2.5994 0.7424 5.0277 29 6 2.6954 -1.6267 5.8145 30 1 -0.3633 0.5863 0.8441 31 1 -0.3634 0.4378 -0.9297 32 1 -0.3634 -1.0241 0.0858 33 1 0.3763 -0.4950 -3.2463 34 1 -0.2674 -3.2151 -3.6510 35 1 -1.4750 -2.5108 -2.5491 36 1 -1.9574 -0.7356 -4.2112 37 1 -0.7499 -1.4393 -5.3135 38 1 -2.0422 -3.5552 -5.3769 39 1 -3.2492 -2.8508 -4.2746 40 1 -5.2686 -4.3983 -6.9379 41 1 4.1668 -0.8770 -0.6580 42 1 3.4805 -2.4157 -1.2792 43 1 3.6655 -2.0413 1.3931 44 1 2.1805 -2.7723 0.7133 45 1 0.0575 0.0340 4.3437 46 1 0.3157 -0.3216 6.0689 47 1 0.1255 -1.6539 4.9043 48 1 2.3892 1.0721 6.0452 49 1 3.6770 0.7315 4.8643 50 1 2.1315 1.4271 4.3204 51 1 2.2958 -2.6302 5.6679 52 1 3.7730 -1.6371 5.6510 53 1 2.4852 -1.2975 6.8322 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492674070.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:49 Heat of formation + Delta-G solvation = -155.461978 kcal Electronic energy + Delta-G solvation = -30637.059485 eV Core-core repulsion = 26507.355889 eV Total energy + Delta-G solvation = -4129.703596 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.17014 -41.21604 -39.15231 -37.52593 -36.82630 -35.21569 -35.12429 -33.36341 -32.50244 -32.36962 -28.80877 -28.37400 -28.29649 -27.22041 -25.37600 -24.72647 -23.23147 -22.32537 -22.26973 -20.60591 -20.22748 -18.93840 -18.55664 -18.40243 -17.44349 -17.30376 -16.88163 -16.73900 -16.40076 -16.22393 -15.81000 -15.69040 -15.25748 -14.82507 -14.51221 -14.36019 -14.33600 -14.16761 -14.10327 -13.75014 -13.49138 -13.41904 -13.32764 -13.08515 -12.92138 -12.86307 -12.77564 -12.70984 -12.58134 -12.53063 -12.43848 -12.41175 -12.26830 -12.21003 -11.97870 -11.65265 -11.54580 -11.38997 -11.24078 -11.06870 -10.64351 -10.54790 -10.05056 -9.82529 -8.19367 -6.30914 1.02940 1.41682 1.44675 1.52449 1.60833 1.73527 2.20186 2.42794 2.84308 3.14318 3.37188 3.43525 3.67622 3.74985 3.79628 3.94352 4.09873 4.13392 4.18534 4.22514 4.26064 4.35932 4.45770 4.50477 4.56869 4.60984 4.62952 4.68855 4.73709 4.75519 4.83645 4.87131 4.88990 4.95530 4.97000 5.01776 5.08009 5.14895 5.17090 5.18833 5.25115 5.27300 5.34892 5.45345 5.46914 5.54456 5.71320 5.84496 6.22234 6.39252 6.62367 6.86831 7.24326 7.30385 7.38760 8.92414 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.022169 B = 0.001883 C = 0.001835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.744751 B =14868.555985 C =15251.620712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.171 3.829 3 H 0.113 0.887 4 C -0.113 4.113 5 H 0.158 0.842 6 C 0.519 3.481 7 O -0.580 6.580 8 N -0.712 5.712 9 C 0.132 3.868 10 C -0.101 4.101 11 C 0.023 3.977 12 C -0.541 4.541 13 H 0.068 0.932 14 C -0.005 4.005 15 N -0.935 5.935 16 Si 0.967 3.033 17 H -0.264 1.264 18 H -0.287 1.287 19 H -0.266 1.266 20 C -0.102 4.102 21 C 0.100 3.900 22 N -0.601 5.601 23 C 0.663 3.337 24 O -0.588 6.588 25 O -0.368 6.368 26 C 0.123 3.877 27 C -0.180 4.180 28 C -0.175 4.175 29 C -0.135 4.135 30 H 0.059 0.941 31 H 0.087 0.913 32 H 0.032 0.968 33 H 0.417 0.583 34 H 0.050 0.950 35 H 0.042 0.958 36 H 0.067 0.933 37 H 0.071 0.929 38 H -0.008 1.008 39 H -0.012 1.012 40 H 0.263 0.737 41 H 0.120 0.880 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.057 0.943 45 H 0.060 0.940 46 H 0.092 0.908 47 H 0.052 0.948 48 H 0.090 0.910 49 H 0.065 0.935 50 H 0.062 0.938 51 H 0.063 0.937 52 H 0.073 0.927 53 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.748 10.867 21.012 32.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.068 3.932 3 H 0.130 0.870 4 C -0.134 4.134 5 H 0.175 0.825 6 C 0.306 3.694 7 O -0.459 6.459 8 N -0.364 5.364 9 C 0.008 3.992 10 C -0.139 4.139 11 C -0.015 4.015 12 C -0.579 4.579 13 H 0.086 0.914 14 C -0.202 4.202 15 N -0.576 5.576 16 Si 0.791 3.209 17 H -0.189 1.189 18 H -0.213 1.213 19 H -0.191 1.191 20 C -0.140 4.140 21 C -0.022 4.022 22 N -0.342 5.342 23 C 0.418 3.582 24 O -0.479 6.479 25 O -0.283 6.283 26 C 0.087 3.913 27 C -0.237 4.237 28 C -0.233 4.233 29 C -0.192 4.192 30 H 0.078 0.922 31 H 0.106 0.894 32 H 0.052 0.948 33 H 0.254 0.746 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.010 0.990 39 H 0.007 0.993 40 H 0.071 0.929 41 H 0.138 0.862 42 H 0.110 0.890 43 H 0.111 0.889 44 H 0.075 0.925 45 H 0.079 0.921 46 H 0.111 0.889 47 H 0.071 0.929 48 H 0.109 0.891 49 H 0.084 0.916 50 H 0.081 0.919 51 H 0.082 0.918 52 H 0.092 0.908 53 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 21.312 10.268 21.594 32.030 hybrid contribution -1.283 -0.026 -0.865 1.548 sum 20.029 10.242 20.728 30.589 Atomic orbital electron populations 1.22237 0.95570 1.01216 1.03584 1.21476 0.93781 0.96528 0.81370 0.86951 1.22579 0.94717 0.97988 0.98153 0.82471 1.20836 0.81937 0.87468 0.79174 1.90693 1.70358 1.25681 1.59187 1.46039 1.36975 1.20898 1.32496 1.21159 0.89804 0.92586 0.95650 1.21589 0.97654 0.99036 0.95631 1.18947 0.93352 0.94442 0.94754 1.21663 1.18839 1.02587 1.14780 0.91425 1.26041 0.98081 0.95368 1.00750 1.70113 1.31533 1.13191 1.42716 0.85469 0.78155 0.78192 0.79035 1.18883 1.21282 1.19107 1.22722 0.96232 1.01551 0.93534 1.22475 0.95272 0.87681 0.96729 1.47362 1.54748 1.30128 1.01961 1.17636 0.78269 0.81073 0.81176 1.90874 1.44410 1.29306 1.83316 1.86322 1.71679 1.53855 1.16459 1.22437 0.96033 0.96359 0.76486 1.22474 0.94771 1.02385 1.04118 1.22439 1.01374 0.95281 1.04158 1.21877 1.01394 0.98382 0.97522 0.92176 0.89448 0.94845 0.74615 0.93196 0.93975 0.91470 0.91041 0.98987 0.99326 0.92869 0.86205 0.88975 0.88938 0.92507 0.92121 0.88874 0.92860 0.89107 0.91629 0.91904 0.91810 0.90846 0.87838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.02 8.12 71.98 0.58 -3.43 16 2 C 0.17 3.23 3.38 45.35 0.15 3.38 16 3 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 4 C -0.11 -1.72 3.36 -10.35 -0.03 -1.76 16 5 H 0.16 1.05 8.13 -2.38 -0.02 1.03 16 6 C 0.52 12.88 4.72 87.66 0.41 13.29 16 7 O -0.58 -19.82 14.72 -3.04 -0.04 -19.86 16 8 N -0.71 -17.23 5.35 -463.06 -2.48 -19.71 16 9 C 0.13 4.46 5.67 86.38 0.49 4.95 16 10 C -0.10 -3.76 5.27 30.60 0.16 -3.59 16 11 C 0.02 1.17 4.97 29.85 0.15 1.32 16 12 C -0.54 -29.92 9.11 25.60 0.23 -29.68 16 13 H 0.07 3.49 7.74 -2.91 -0.02 3.46 16 14 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 15 N -0.94 -57.16 13.29 21.45 0.28 -56.88 16 16 Si 0.97 43.60 29.54 68.60 2.03 45.63 16 17 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 18 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 19 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 20 C -0.10 -1.38 6.33 31.99 0.20 -1.18 16 21 C 0.10 1.95 6.52 86.86 0.57 2.52 16 22 N -0.60 -13.48 3.06 -918.20 -2.81 -16.30 16 23 C 0.66 17.15 7.72 129.79 1.00 18.16 16 24 O -0.59 -17.19 11.00 19.80 0.22 -16.97 16 25 O -0.37 -8.59 9.42 -55.49 -0.52 -9.11 16 26 C 0.12 2.22 1.13 -10.79 -0.01 2.21 16 27 C -0.18 -3.48 8.37 71.98 0.60 -2.88 16 28 C -0.18 -2.85 8.37 71.98 0.60 -2.24 16 29 C -0.13 -1.57 8.85 71.98 0.64 -0.94 16 30 H 0.06 1.61 7.03 -2.38 -0.02 1.59 16 31 H 0.09 1.76 7.87 -2.39 -0.02 1.74 16 32 H 0.03 1.01 7.02 -2.39 -0.02 0.99 16 33 H 0.42 7.05 8.46 -92.70 -0.78 6.26 16 34 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 38 H -0.01 -0.47 8.14 -2.39 -0.02 -0.48 16 39 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 40 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 41 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.09 1.34 7.99 -2.39 -0.02 1.32 16 43 H 0.09 1.50 8.04 -2.39 -0.02 1.48 16 44 H 0.06 1.46 6.96 -2.39 -0.02 1.44 16 45 H 0.06 1.53 5.88 -2.38 -0.01 1.51 16 46 H 0.09 1.29 8.14 -2.39 -0.02 1.28 16 47 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 48 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 49 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 50 H 0.06 1.37 5.88 -2.39 -0.01 1.36 16 51 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 52 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 53 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -76.78 416.51 2.98 -73.80 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: 0.10 Total: 19.10 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: 6.21 Total: 0.31 kcal Atomic # 7 Polarization: -87.88 SS G_CDS: -5.01 Total: -92.89 kcal Atomic # 8 Polarization: -45.60 SS G_CDS: -0.35 Total: -45.95 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -76.78 2.98 -73.80 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492674070.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.660 kcal (2) G-P(sol) polarization free energy of solvation -76.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds