Wall clock time and date at job start Wed Apr 1 2020 00:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.87413 * 2 1 4 4 C 1.54321 * 109.88514 * 121.16953 * 2 1 3 5 5 H 1.09007 * 110.71611 * 23.24471 * 4 2 1 6 6 C 1.50698 * 110.72533 * 259.97948 * 4 2 1 7 7 O 1.21285 * 119.99621 * 359.97438 * 6 4 2 8 8 N 1.34777 * 120.00428 * 179.97438 * 6 4 2 9 9 C 1.46505 * 120.00030 * 179.97438 * 8 6 4 10 10 C 1.53001 * 109.47034 * 180.02562 * 9 8 6 11 11 C 1.52994 * 109.47066 * 180.02562 * 10 9 8 12 12 C 1.50703 * 109.47277 * 180.02562 * 11 10 9 13 13 H 1.08002 * 119.99815 * 359.97438 * 12 11 10 14 14 C 1.37869 * 120.00201 * 180.02562 * 12 11 10 15 15 N 1.31521 * 120.00149 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00145 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46973 * 90.00011 * 16 14 12 18 18 H 1.48502 * 109.47083 * 209.99826 * 16 14 12 19 19 H 1.48503 * 109.46947 * 330.00259 * 16 14 12 20 20 C 1.55149 * 102.94606 * 141.60835 * 4 2 1 21 21 C 1.54906 * 101.58341 * 324.50130 * 20 4 2 22 22 N 1.47014 * 109.88588 * 238.98085 * 2 1 3 23 23 C 1.34776 * 125.64928 * 61.60401 * 22 2 1 24 24 O 1.21508 * 120.00014 * 0.02562 * 23 22 2 25 25 O 1.34643 * 120.00089 * 180.02562 * 23 22 2 26 26 C 1.45202 * 117.00063 * 180.02562 * 25 23 22 27 27 C 1.52998 * 109.46859 * 59.99740 * 26 25 23 28 28 C 1.53002 * 109.47141 * 179.97438 * 26 25 23 29 29 C 1.53000 * 109.46834 * 299.99812 * 26 25 23 30 30 H 1.09002 * 109.47153 * 179.56545 * 1 2 3 31 31 H 1.09001 * 109.46832 * 59.56735 * 1 2 3 32 32 H 1.09004 * 109.47261 * 299.56717 * 1 2 3 33 33 H 0.96997 * 119.99946 * 359.97438 * 8 6 4 34 34 H 1.08998 * 109.47177 * 300.00390 * 9 8 6 35 35 H 1.09003 * 109.46737 * 60.00317 * 9 8 6 36 36 H 1.09005 * 109.46980 * 300.00676 * 10 9 8 37 37 H 1.09001 * 109.46652 * 60.00320 * 10 9 8 38 38 H 1.08992 * 109.47260 * 300.00580 * 11 10 9 39 39 H 1.09003 * 109.46907 * 60.00159 * 11 10 9 40 40 H 0.96996 * 120.00091 * 179.97438 * 15 14 12 41 41 H 1.09000 * 111.01148 * 206.42490 * 20 4 2 42 42 H 1.09004 * 111.00506 * 82.57471 * 20 4 2 43 43 H 1.08997 * 110.36871 * 278.16762 * 21 20 4 44 44 H 1.09000 * 110.46413 * 155.88996 * 21 20 4 45 45 H 1.08994 * 109.47527 * 60.00055 * 27 26 25 46 46 H 1.09006 * 109.46785 * 180.02562 * 27 26 25 47 47 H 1.09005 * 109.47348 * 299.99446 * 27 26 25 48 48 H 1.08997 * 109.46517 * 60.00362 * 28 26 25 49 49 H 1.08994 * 109.46651 * 179.97438 * 28 26 25 50 50 H 1.09000 * 109.46944 * 300.00274 * 28 26 25 51 51 H 1.08999 * 109.47029 * 60.00131 * 29 26 25 52 52 H 1.08996 * 109.46837 * 179.97438 * 29 26 25 53 53 H 1.08996 * 109.47165 * 299.99723 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7511 1.2417 5 1 1.3051 -1.4480 1.6163 6 6 2.4669 0.2201 2.3178 7 8 2.3598 1.4137 2.1308 8 7 2.9544 -0.2375 3.4880 9 6 3.3555 0.7067 4.5339 10 6 3.8702 -0.0669 5.7494 11 6 4.2884 0.9191 6.8419 12 6 4.7959 0.1572 8.0389 13 1 4.8176 -0.9225 8.0222 14 6 5.2316 0.8382 9.1556 15 7 5.2048 2.1530 9.1761 16 14 5.8601 -0.1063 10.6397 17 1 7.3233 -0.3219 10.5058 18 1 5.5853 0.6717 11.8743 19 1 5.1714 -1.4196 10.7185 20 6 3.2876 -1.5151 0.6904 21 6 2.8145 -1.8785 -0.7392 22 7 2.0300 -0.7124 -1.1848 23 6 1.8075 -0.3587 -2.4661 24 8 1.1424 0.6266 -2.7176 25 8 2.3220 -1.0972 -3.4675 26 6 2.0423 -0.6567 -4.8225 27 6 2.5977 0.7545 -5.0248 28 6 2.7049 -1.6125 -5.8166 29 6 0.5299 -0.6475 -5.0537 30 1 -0.3633 -1.0276 -0.0078 31 1 -0.3633 0.5206 -0.8861 32 1 -0.3634 0.5071 0.8939 33 1 3.0397 -1.1921 3.6377 34 1 4.1457 1.3547 4.1548 35 1 2.4972 1.3124 4.8250 36 1 3.0802 -0.7153 6.1286 37 1 4.7284 -0.6723 5.4579 38 1 5.0781 1.5678 6.4629 39 1 3.4298 1.5242 7.1332 40 1 5.5110 2.6322 9.9619 41 1 3.4852 -2.4127 1.2765 42 1 4.1654 -0.8697 0.6593 43 1 2.1887 -2.7705 -0.7164 44 1 3.6705 -2.0331 -1.3960 45 1 3.6751 0.7480 -4.8601 46 1 2.3872 1.0854 -6.0419 47 1 2.1259 1.4357 -4.3167 48 1 2.3095 -2.6180 -5.6725 49 1 2.4945 -1.2820 -6.8337 50 1 3.7823 -1.6187 -5.6516 51 1 0.0582 0.0337 -4.3455 52 1 0.3198 -0.3164 -6.0707 53 1 0.1342 -1.6529 -4.9095 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492674072.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:56 Heat of formation + Delta-G solvation = -159.114403 kcal Electronic energy + Delta-G solvation = -30086.541680 eV Core-core repulsion = 25956.679703 eV Total energy + Delta-G solvation = -4129.861977 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.07832 -41.14046 -39.35015 -37.54138 -36.93294 -35.20912 -35.14103 -33.37616 -32.56766 -32.26433 -28.87745 -28.37095 -28.28491 -27.30056 -25.25575 -24.62445 -23.21762 -22.29437 -22.12957 -20.78434 -20.27430 -19.12238 -18.52509 -18.25598 -17.47634 -17.28696 -16.90265 -16.66197 -16.41881 -16.20955 -15.93533 -15.46596 -15.25612 -15.01460 -14.69713 -14.50409 -14.26811 -14.18080 -13.90367 -13.74540 -13.57000 -13.43135 -13.32731 -13.07377 -12.94482 -12.86122 -12.84490 -12.73504 -12.66630 -12.52715 -12.44511 -12.35909 -12.26217 -11.98664 -11.85418 -11.64788 -11.56128 -11.38626 -11.22433 -11.07227 -10.81105 -10.54194 -10.10385 -9.82240 -8.18244 -6.29785 0.97363 1.43060 1.44223 1.55150 1.57356 1.73092 2.17143 2.43699 2.84980 3.15761 3.29152 3.42080 3.71307 3.75610 3.80175 3.94976 4.07468 4.17012 4.18482 4.23517 4.26510 4.33277 4.47444 4.52649 4.57682 4.61090 4.66211 4.70179 4.75592 4.76306 4.84185 4.88579 4.94612 4.96770 4.99975 5.03809 5.10518 5.12010 5.18851 5.20100 5.25871 5.27785 5.35695 5.44609 5.46320 5.54832 5.72747 5.85931 6.23276 6.39439 6.57993 6.88373 7.23597 7.26083 7.40107 8.93733 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.031058 B = 0.001655 C = 0.001634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.332326 B =16910.801140 C =17131.915944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.164 3.836 3 H 0.059 0.941 4 C -0.106 4.106 5 H 0.152 0.848 6 C 0.518 3.482 7 O -0.588 6.588 8 N -0.706 5.706 9 C 0.129 3.871 10 C -0.100 4.100 11 C 0.021 3.979 12 C -0.540 4.540 13 H 0.069 0.931 14 C -0.005 4.005 15 N -0.936 5.936 16 Si 0.967 3.033 17 H -0.273 1.273 18 H -0.287 1.287 19 H -0.259 1.259 20 C -0.115 4.115 21 C 0.103 3.897 22 N -0.603 5.603 23 C 0.662 3.338 24 O -0.592 6.592 25 O -0.362 6.362 26 C 0.125 3.875 27 C -0.181 4.181 28 C -0.133 4.133 29 C -0.178 4.178 30 H 0.079 0.921 31 H 0.050 0.950 32 H 0.067 0.933 33 H 0.419 0.581 34 H 0.046 0.954 35 H 0.048 0.952 36 H 0.070 0.930 37 H 0.071 0.929 38 H -0.010 1.010 39 H -0.009 1.009 40 H 0.262 0.738 41 H 0.138 0.862 42 H 0.069 0.931 43 H 0.101 0.899 44 H 0.090 0.910 45 H 0.059 0.941 46 H 0.091 0.909 47 H 0.056 0.944 48 H 0.073 0.927 49 H 0.101 0.899 50 H 0.068 0.932 51 H 0.058 0.942 52 H 0.089 0.911 53 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.038 -15.921 -29.951 34.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.061 3.939 3 H 0.077 0.923 4 C -0.128 4.128 5 H 0.170 0.830 6 C 0.305 3.695 7 O -0.468 6.468 8 N -0.357 5.357 9 C 0.005 3.995 10 C -0.138 4.138 11 C -0.017 4.017 12 C -0.578 4.578 13 H 0.087 0.913 14 C -0.202 4.202 15 N -0.576 5.576 16 Si 0.792 3.208 17 H -0.199 1.199 18 H -0.213 1.213 19 H -0.183 1.183 20 C -0.153 4.153 21 C -0.018 4.018 22 N -0.344 5.344 23 C 0.417 3.583 24 O -0.483 6.483 25 O -0.276 6.276 26 C 0.088 3.912 27 C -0.238 4.238 28 C -0.190 4.190 29 C -0.235 4.235 30 H 0.098 0.902 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.257 0.743 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.009 0.991 39 H 0.009 0.991 40 H 0.071 0.929 41 H 0.156 0.844 42 H 0.087 0.913 43 H 0.119 0.881 44 H 0.109 0.891 45 H 0.078 0.922 46 H 0.109 0.891 47 H 0.075 0.925 48 H 0.092 0.908 49 H 0.119 0.881 50 H 0.087 0.913 51 H 0.077 0.923 52 H 0.108 0.892 53 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.276 -14.635 -30.223 34.359 hybrid contribution 0.327 0.447 1.110 1.241 sum -6.949 -14.188 -29.113 33.123 Atomic orbital electron populations 1.22075 0.93590 1.03170 1.02410 1.21232 0.95194 0.95565 0.81884 0.92285 1.22382 1.01725 0.97017 0.91682 0.83046 1.20757 0.76391 0.89071 0.83321 1.90725 1.56214 1.19114 1.80776 1.45857 1.64131 1.11363 1.14393 1.21228 0.98558 0.92175 0.87556 1.21584 1.00811 0.98311 0.93104 1.18967 0.94738 0.94586 0.93394 1.21698 1.41967 0.93878 1.00216 0.91296 1.26034 0.96137 0.95760 1.02277 1.70119 1.48586 1.08248 1.30662 0.85416 0.78751 0.78767 0.77902 1.19880 1.21260 1.18261 1.22906 0.95054 1.01978 0.95378 1.22605 0.96040 0.87954 0.95242 1.47311 1.54851 1.30694 1.01593 1.17659 0.78437 0.80924 0.81268 1.90894 1.44645 1.29410 1.83400 1.86305 1.71388 1.53760 1.16196 1.22423 0.96470 0.95681 0.76580 1.22483 1.01188 0.96128 1.04038 1.21868 1.01179 0.98708 0.97284 1.22454 0.94191 1.02926 1.03959 0.90215 0.93068 0.91376 0.74291 0.93508 0.93397 0.91088 0.91031 0.99137 0.99106 0.92911 0.84433 0.91251 0.88091 0.89117 0.92202 0.89051 0.92496 0.90839 0.88061 0.91269 0.92294 0.89196 0.91626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 9.10 71.98 0.66 -2.60 16 2 C 0.16 3.69 2.88 45.34 0.13 3.82 16 3 H 0.06 1.85 6.81 -2.39 -0.02 1.83 16 4 C -0.11 -1.72 2.87 -10.36 -0.03 -1.75 16 5 H 0.15 1.43 7.85 -2.38 -0.02 1.41 16 6 C 0.52 13.31 7.13 87.66 0.63 13.94 16 7 O -0.59 -21.63 15.42 -3.05 -0.05 -21.67 16 8 N -0.71 -16.72 5.56 -463.04 -2.57 -19.29 16 9 C 0.13 4.29 5.67 86.38 0.49 4.78 16 10 C -0.10 -3.62 5.27 30.59 0.16 -3.46 16 11 C 0.02 1.06 4.97 29.85 0.15 1.21 16 12 C -0.54 -29.47 9.11 25.60 0.23 -29.23 16 13 H 0.07 3.50 7.74 -2.91 -0.02 3.47 16 14 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 15 N -0.94 -56.82 13.29 21.45 0.28 -56.53 16 16 Si 0.97 43.12 29.54 68.60 2.03 45.15 16 17 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 18 H -0.29 -12.71 7.11 99.48 0.71 -12.01 16 19 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 20 C -0.12 -1.24 6.52 31.98 0.21 -1.03 16 21 C 0.10 1.20 6.92 86.85 0.60 1.80 16 22 N -0.60 -12.33 3.07 -918.24 -2.81 -15.14 16 23 C 0.66 16.22 7.72 129.79 1.00 17.22 16 24 O -0.59 -17.89 10.92 19.81 0.22 -17.67 16 25 O -0.36 -7.32 9.42 -55.52 -0.52 -7.84 16 26 C 0.12 2.00 1.13 -10.79 -0.01 1.99 16 27 C -0.18 -3.16 8.37 71.98 0.60 -2.55 16 28 C -0.13 -1.22 8.85 71.98 0.64 -0.58 16 29 C -0.18 -2.81 8.37 71.98 0.60 -2.21 16 30 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.05 1.31 6.88 -2.39 -0.02 1.30 16 32 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 33 H 0.42 6.53 8.47 -92.71 -0.79 5.75 16 34 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.05 1.76 8.14 -2.39 -0.02 1.75 16 36 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 37 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 38 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 39 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 40 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 41 H 0.14 0.45 8.14 -2.39 -0.02 0.43 16 42 H 0.07 1.02 8.04 -2.38 -0.02 1.00 16 43 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.09 0.99 8.04 -2.39 -0.02 0.97 16 45 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 47 H 0.06 1.38 5.88 -2.38 -0.01 1.37 16 48 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 49 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 50 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 51 H 0.06 1.31 5.88 -2.39 -0.01 1.30 16 52 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 53 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -78.66 421.20 3.18 -75.47 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: 0.09 Total: 15.99 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: 6.52 Total: 1.54 kcal Atomic # 7 Polarization: -85.86 SS G_CDS: -5.10 Total: -90.96 kcal Atomic # 8 Polarization: -46.84 SS G_CDS: -0.35 Total: -47.19 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -78.66 3.18 -75.47 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492674072.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.641 kcal (2) G-P(sol) polarization free energy of solvation -78.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds