Wall clock time and date at job start Wed Apr 1 2020 00:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.99371 * 2 1 4 4 C 1.54321 * 109.87920 * 121.09654 * 2 1 3 5 5 H 1.09008 * 110.71684 * 260.14934 * 4 2 1 6 6 C 1.50697 * 110.72507 * 23.24805 * 4 2 1 7 7 O 1.21280 * 120.00095 * 82.93901 * 6 4 2 8 8 N 1.34777 * 119.99770 * 262.66877 * 6 4 2 9 9 C 1.46507 * 119.99724 * 180.27641 * 8 6 4 10 10 C 1.52994 * 109.47008 * 180.02562 * 9 8 6 11 11 C 1.52998 * 109.47198 * 179.97438 * 10 9 8 12 12 C 1.50702 * 109.47278 * 179.97438 * 11 10 9 13 13 H 1.07992 * 119.99905 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99784 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00085 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99758 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47062 * 90.00154 * 16 14 12 18 18 H 1.48495 * 109.47340 * 210.00403 * 16 14 12 19 19 H 1.48498 * 109.47084 * 330.00587 * 16 14 12 20 20 C 1.55165 * 103.09967 * 141.70246 * 4 2 1 21 21 C 1.54914 * 101.57748 * 324.40351 * 20 4 2 22 22 N 1.47421 * 104.83030 * 37.01568 * 21 20 4 23 23 C 1.34780 * 125.64735 * 155.82822 * 22 21 20 24 24 O 1.21511 * 119.99989 * 180.02562 * 23 22 21 25 25 O 1.34635 * 120.00044 * 0.02562 * 23 22 21 26 26 C 1.45200 * 116.99909 * 180.02562 * 25 23 22 27 27 C 1.52994 * 109.47395 * 59.99660 * 26 25 23 28 28 C 1.53001 * 109.46751 * 179.97438 * 26 25 23 29 29 C 1.52995 * 109.47193 * 299.99523 * 26 25 23 30 30 H 1.08996 * 109.47246 * 292.44776 * 1 2 3 31 31 H 1.09004 * 109.47154 * 52.44851 * 1 2 3 32 32 H 1.08997 * 109.47178 * 172.44631 * 1 2 3 33 33 H 0.96997 * 120.00188 * 0.26941 * 8 6 4 34 34 H 1.09006 * 109.46631 * 299.99696 * 9 8 6 35 35 H 1.08993 * 109.47178 * 59.99358 * 9 8 6 36 36 H 1.09006 * 109.47160 * 299.99353 * 10 9 8 37 37 H 1.09001 * 109.47484 * 59.99337 * 10 9 8 38 38 H 1.09001 * 109.47382 * 299.99616 * 11 10 9 39 39 H 1.09001 * 109.47260 * 59.99426 * 11 10 9 40 40 H 0.97000 * 119.99561 * 180.02562 * 15 14 12 41 41 H 1.08996 * 111.00544 * 82.48275 * 20 4 2 42 42 H 1.08997 * 110.99927 * 206.33218 * 20 4 2 43 43 H 1.09002 * 110.35918 * 155.84501 * 21 20 4 44 44 H 1.08997 * 110.36809 * 278.17176 * 21 20 4 45 45 H 1.09009 * 109.47273 * 59.99873 * 27 26 25 46 46 H 1.09000 * 109.47339 * 179.97438 * 27 26 25 47 47 H 1.09007 * 109.47091 * 300.00018 * 27 26 25 48 48 H 1.09000 * 109.47597 * 60.00098 * 28 26 25 49 49 H 1.09000 * 109.47021 * 180.02562 * 28 26 25 50 50 H 1.08999 * 109.47119 * 299.99476 * 28 26 25 51 51 H 1.08997 * 109.47199 * 59.99728 * 29 26 25 52 52 H 1.08999 * 109.47642 * 180.02562 * 29 26 25 53 53 H 1.09007 * 109.47190 * 300.00570 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7495 1.2427 5 1 2.3500 -0.0460 2.0213 6 6 1.0183 -1.7124 1.7619 7 8 0.9076 -2.8118 1.2620 8 7 0.2180 -1.3537 2.7853 9 6 -0.7856 -2.2920 3.2940 10 6 -1.5539 -1.6417 4.4462 11 6 -2.6024 -2.6214 4.9771 12 6 -3.3588 -1.9811 6.1125 13 1 -3.1162 -0.9759 6.4239 14 6 -4.3612 -2.6784 6.7529 15 7 -4.6569 -3.9023 6.3732 16 14 -5.2983 -1.8850 8.1607 17 1 -6.4817 -1.1657 7.6244 18 1 -5.7458 -2.9345 9.1111 19 1 -4.4124 -0.9240 8.8655 20 6 3.2898 -1.5141 0.6968 21 6 2.8201 -1.8831 -0.7325 22 7 2.0353 -0.7197 -1.1840 23 6 1.8162 -0.3701 -2.4671 24 8 1.1512 0.6140 -2.7236 25 8 2.3344 -1.1112 -3.4646 26 6 2.0583 -0.6750 -4.8218 27 6 2.6132 0.7360 -5.0269 28 6 2.7246 -1.6334 -5.8109 29 6 0.5466 -0.6677 -5.0576 30 1 -0.3633 0.3924 0.9498 31 1 -0.3634 0.6264 -0.8148 32 1 -0.3633 -1.0187 -0.1351 33 1 0.3066 -0.4744 3.1851 34 1 -1.4801 -2.5498 2.4944 35 1 -0.2907 -3.1952 3.6507 36 1 -0.8596 -1.3835 5.2459 37 1 -2.0488 -0.7386 4.0891 38 1 -3.2967 -2.8792 4.1773 39 1 -2.1078 -3.5247 5.3341 40 1 -5.3624 -4.3926 6.8235 41 1 4.1668 -0.8677 0.6653 42 1 3.4871 -2.4092 1.2866 43 1 3.6789 -2.0380 -1.3857 44 1 2.1952 -2.7759 -0.7078 45 1 3.6902 0.7308 -4.8589 46 1 2.4063 1.0632 -6.0458 47 1 2.1388 1.4190 -4.3221 48 1 2.3297 -2.6388 -5.6650 49 1 2.5178 -1.3057 -6.8297 50 1 3.8016 -1.6381 -5.6428 51 1 0.0722 0.0151 -4.3528 52 1 0.3393 -0.3408 -6.0765 53 1 0.1512 -1.6730 -4.9114 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492674073.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:00 Heat of formation + Delta-G solvation = -155.310420 kcal Electronic energy + Delta-G solvation = -30647.548227 eV Core-core repulsion = 26517.851203 eV Total energy + Delta-G solvation = -4129.697024 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.15299 -41.21501 -39.13478 -37.52188 -36.83187 -35.22618 -35.12269 -33.37787 -32.49384 -32.35169 -28.80514 -28.37396 -28.29632 -27.22508 -25.37222 -24.71870 -23.22449 -22.32486 -22.27132 -20.60276 -20.22879 -18.93115 -18.55814 -18.40079 -17.44288 -17.30072 -16.87529 -16.74534 -16.39670 -16.22695 -15.80603 -15.68968 -15.25704 -14.81474 -14.52525 -14.37399 -14.32886 -14.16628 -14.10720 -13.74580 -13.47823 -13.43028 -13.33218 -13.08647 -12.92207 -12.86328 -12.78250 -12.74526 -12.57296 -12.52443 -12.43387 -12.38293 -12.26403 -12.20847 -11.97596 -11.65803 -11.55058 -11.38984 -11.22741 -11.06888 -10.65185 -10.55709 -10.05047 -9.82730 -8.19702 -6.31107 1.02669 1.41631 1.42812 1.53772 1.60786 1.73849 2.20023 2.42525 2.83923 3.14128 3.37157 3.43526 3.67408 3.75014 3.79628 3.94387 4.09518 4.13386 4.18349 4.22417 4.26051 4.36209 4.45417 4.50416 4.56809 4.61019 4.63024 4.68888 4.73704 4.75463 4.83707 4.87100 4.89263 4.95535 4.97132 5.01942 5.07873 5.14748 5.17122 5.18854 5.24405 5.27260 5.34740 5.45367 5.46818 5.54426 5.71222 5.84440 6.22155 6.39316 6.62065 6.86871 7.24429 7.30076 7.38599 8.92311 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.021598 B = 0.001896 C = 0.001845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.127264 B =14761.887176 C =15172.107095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.170 3.830 3 H 0.114 0.886 4 C -0.113 4.113 5 H 0.158 0.842 6 C 0.518 3.482 7 O -0.579 6.579 8 N -0.712 5.712 9 C 0.132 3.868 10 C -0.101 4.101 11 C 0.023 3.977 12 C -0.540 4.540 13 H 0.068 0.932 14 C -0.005 4.005 15 N -0.935 5.935 16 Si 0.967 3.033 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.259 1.259 20 C -0.102 4.102 21 C 0.101 3.899 22 N -0.602 5.602 23 C 0.663 3.337 24 O -0.588 6.588 25 O -0.369 6.369 26 C 0.123 3.877 27 C -0.175 4.175 28 C -0.135 4.135 29 C -0.180 4.180 30 H 0.087 0.913 31 H 0.060 0.940 32 H 0.031 0.969 33 H 0.416 0.584 34 H 0.042 0.958 35 H 0.050 0.950 36 H 0.071 0.929 37 H 0.067 0.933 38 H -0.012 1.012 39 H -0.008 1.008 40 H 0.263 0.737 41 H 0.119 0.881 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.056 0.944 45 H 0.065 0.935 46 H 0.090 0.910 47 H 0.062 0.938 48 H 0.063 0.937 49 H 0.103 0.897 50 H 0.072 0.928 51 H 0.060 0.940 52 H 0.092 0.908 53 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.915 10.944 -20.765 32.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.069 3.931 3 H 0.132 0.868 4 C -0.135 4.135 5 H 0.176 0.824 6 C 0.306 3.694 7 O -0.459 6.459 8 N -0.364 5.364 9 C 0.008 3.992 10 C -0.139 4.139 11 C -0.015 4.015 12 C -0.578 4.578 13 H 0.086 0.914 14 C -0.203 4.203 15 N -0.576 5.576 16 Si 0.792 3.208 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.183 1.183 20 C -0.140 4.140 21 C -0.021 4.021 22 N -0.343 5.343 23 C 0.418 3.582 24 O -0.479 6.479 25 O -0.283 6.283 26 C 0.087 3.913 27 C -0.233 4.233 28 C -0.192 4.192 29 C -0.237 4.237 30 H 0.106 0.894 31 H 0.079 0.921 32 H 0.050 0.950 33 H 0.254 0.746 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.007 0.993 39 H 0.010 0.990 40 H 0.071 0.929 41 H 0.138 0.862 42 H 0.110 0.890 43 H 0.111 0.889 44 H 0.075 0.925 45 H 0.084 0.916 46 H 0.109 0.891 47 H 0.081 0.919 48 H 0.082 0.918 49 H 0.122 0.878 50 H 0.091 0.909 51 H 0.079 0.921 52 H 0.111 0.889 53 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 21.512 10.329 -21.323 32.002 hybrid contribution -1.319 -0.031 0.824 1.556 sum 20.192 10.298 -20.499 30.561 Atomic orbital electron populations 1.22230 0.95471 1.01149 1.03632 1.21576 0.93803 0.96483 0.81278 0.86829 1.22582 0.94709 0.97957 0.98248 0.82438 1.20839 0.81895 0.87789 0.78899 1.90690 1.71376 1.24649 1.59182 1.46044 1.36005 1.19325 1.35065 1.21158 0.89793 0.92449 0.95794 1.21587 0.97364 0.98934 0.96031 1.18951 0.93379 0.94454 0.94733 1.21689 1.17932 1.01153 1.16981 0.91426 1.26040 0.98418 0.95402 1.00400 1.70114 1.31901 1.12269 1.43282 0.85416 0.78792 0.78129 0.78512 1.19973 1.21093 1.18278 1.22722 0.96172 1.01574 0.93566 1.22467 0.95192 0.87778 0.96679 1.47494 1.54573 1.30318 1.01953 1.17646 0.78314 0.81030 0.81192 1.90874 1.44304 1.29520 1.83209 1.86323 1.71398 1.54094 1.16521 1.22434 0.96065 0.96373 0.76440 1.22440 1.01402 0.95252 1.04156 1.21876 1.01322 0.98406 0.97577 1.22473 0.94790 1.02376 1.04104 0.89388 0.92096 0.94976 0.74625 0.93985 0.93179 0.91042 0.91469 0.99329 0.98965 0.92869 0.86233 0.88998 0.88942 0.92530 0.91639 0.89111 0.91891 0.91808 0.87841 0.90856 0.92115 0.88879 0.92866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.94 8.05 71.98 0.58 -3.36 16 2 C 0.17 3.20 3.40 45.25 0.15 3.35 16 3 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 4 C -0.11 -1.73 3.34 -10.35 -0.03 -1.76 16 5 H 0.16 1.05 8.14 -2.38 -0.02 1.03 16 6 C 0.52 12.88 4.76 87.66 0.42 13.30 16 7 O -0.58 -19.81 14.83 -3.03 -0.04 -19.85 16 8 N -0.71 -17.25 5.10 -463.06 -2.36 -19.61 16 9 C 0.13 4.46 5.67 86.38 0.49 4.95 16 10 C -0.10 -3.76 5.27 30.59 0.16 -3.60 16 11 C 0.02 1.16 4.97 29.85 0.15 1.31 16 12 C -0.54 -29.86 9.11 25.60 0.23 -29.62 16 13 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 14 C -0.01 -0.29 5.46 84.66 0.46 0.17 16 15 N -0.94 -57.16 13.29 21.45 0.28 -56.87 16 16 Si 0.97 43.64 29.54 68.60 2.03 45.67 16 17 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 18 H -0.29 -12.72 7.11 99.48 0.71 -12.02 16 19 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 20 C -0.10 -1.39 6.32 31.99 0.20 -1.18 16 21 C 0.10 1.96 6.53 86.86 0.57 2.53 16 22 N -0.60 -13.49 3.08 -917.11 -2.83 -16.32 16 23 C 0.66 17.14 7.73 129.79 1.00 18.14 16 24 O -0.59 -17.17 11.07 19.81 0.22 -16.95 16 25 O -0.37 -8.60 9.42 -55.45 -0.52 -9.12 16 26 C 0.12 2.22 1.13 -10.80 -0.01 2.21 16 27 C -0.18 -2.85 8.37 71.98 0.60 -2.24 16 28 C -0.13 -1.58 8.85 71.98 0.64 -0.94 16 29 C -0.18 -3.48 8.37 71.98 0.60 -2.88 16 30 H 0.09 1.75 7.59 -2.39 -0.02 1.73 16 31 H 0.06 1.60 7.15 -2.39 -0.02 1.59 16 32 H 0.03 0.96 7.27 -2.39 -0.02 0.95 16 33 H 0.42 7.06 8.47 -92.71 -0.79 6.28 16 34 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 35 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 37 H 0.07 2.33 8.14 -2.39 -0.02 2.32 16 38 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 39 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 40 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 41 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.09 1.36 7.96 -2.39 -0.02 1.34 16 43 H 0.09 1.50 8.04 -2.39 -0.02 1.48 16 44 H 0.06 1.46 6.97 -2.39 -0.02 1.44 16 45 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 46 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.06 1.37 5.88 -2.38 -0.01 1.36 16 48 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 49 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 50 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 51 H 0.06 1.53 5.88 -2.39 -0.01 1.52 16 52 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 53 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 Total: -1.00 -76.81 416.52 3.09 -73.72 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: 0.10 Total: 18.96 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: 6.21 Total: 0.36 kcal Atomic # 7 Polarization: -87.89 SS G_CDS: -4.90 Total: -92.80 kcal Atomic # 8 Polarization: -45.57 SS G_CDS: -0.35 Total: -45.92 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -76.81 3.09 -73.72 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492674073.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.586 kcal (2) G-P(sol) polarization free energy of solvation -76.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds