Wall clock time and date at job start Wed Apr 1 2020 00:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.44848 * 2 1 4 4 C 1.53043 * 109.46214 * 119.96573 * 2 1 3 5 5 C 1.53185 * 109.31168 * 181.38189 * 4 2 1 6 6 N 1.46920 * 108.77916 * 305.36762 * 5 4 2 7 7 C 1.34782 * 120.63378 * 233.58600 * 6 5 4 8 8 O 1.21504 * 120.00627 * 186.19429 * 7 6 5 9 9 O 1.34643 * 119.99458 * 6.19582 * 7 6 5 10 10 C 1.45204 * 116.99876 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.46704 * 60.00082 * 10 9 7 12 12 C 1.53000 * 109.47009 * 180.02562 * 10 9 7 13 13 C 1.52996 * 109.47104 * 300.00276 * 10 9 7 14 14 C 1.46920 * 118.73889 * 53.60882 * 6 5 4 15 15 H 1.08998 * 109.58813 * 66.32589 * 14 6 5 16 16 C 1.50701 * 109.58840 * 186.60342 * 14 6 5 17 17 O 1.21289 * 120.00006 * 62.24918 * 16 14 6 18 18 N 1.34779 * 120.00227 * 242.25081 * 16 14 6 19 19 C 1.46493 * 119.99988 * 359.97438 * 18 16 14 20 20 C 1.46505 * 119.99550 * 180.02562 * 18 16 14 21 21 C 1.50701 * 109.47014 * 269.99269 * 20 18 16 22 22 H 1.08006 * 119.99843 * 0.02562 * 21 20 18 23 23 C 1.37870 * 119.99950 * 180.02562 * 21 20 18 24 24 N 1.31506 * 120.00427 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99818 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47177 * 359.97438 * 25 23 21 27 27 H 1.48506 * 109.47011 * 120.00030 * 25 23 21 28 28 H 1.48499 * 109.47188 * 239.99553 * 25 23 21 29 29 C 1.53041 * 109.46033 * 240.03836 * 2 1 3 30 30 H 1.09000 * 109.46856 * 300.03681 * 1 2 3 31 31 H 1.09004 * 109.47049 * 60.03087 * 1 2 3 32 32 H 1.08992 * 109.47327 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.49316 * 61.43424 * 4 2 1 34 34 H 1.08994 * 109.49766 * 301.33829 * 4 2 1 35 35 H 1.09007 * 109.58708 * 185.57726 * 5 4 2 36 36 H 1.09008 * 109.70610 * 65.22859 * 5 4 2 37 37 H 1.08999 * 109.47180 * 60.00544 * 11 10 9 38 38 H 1.09000 * 109.46792 * 179.97438 * 11 10 9 39 39 H 1.08996 * 109.47148 * 300.00051 * 11 10 9 40 40 H 1.08997 * 109.47111 * 60.00295 * 12 10 9 41 41 H 1.09000 * 109.47017 * 180.02562 * 12 10 9 42 42 H 1.09000 * 109.47053 * 300.00003 * 12 10 9 43 43 H 1.09000 * 109.47647 * 59.99880 * 13 10 9 44 44 H 1.09000 * 109.47008 * 179.97438 * 13 10 9 45 45 H 1.09006 * 109.47319 * 300.00014 * 13 10 9 46 46 H 1.08999 * 109.47716 * 270.00227 * 19 18 16 47 47 H 1.09004 * 109.47118 * 30.00928 * 19 18 16 48 48 H 1.09004 * 109.47077 * 150.00186 * 19 18 16 49 49 H 1.09008 * 109.46496 * 149.99993 * 20 18 16 50 50 H 1.08997 * 109.47507 * 29.99824 * 20 18 16 51 51 H 0.97003 * 119.99802 * 0.02562 * 24 23 21 52 52 H 1.08993 * 109.50108 * 58.66045 * 29 2 1 53 53 H 1.09003 * 109.49181 * 298.56740 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0279 0.0000 4 6 2.0399 -0.7207 1.2501 5 6 3.5714 -0.6886 1.2641 6 7 4.0678 -1.2488 -0.0001 7 6 4.9621 -2.2572 -0.0002 8 8 5.4500 -2.6366 -1.0463 9 8 5.3147 -2.8443 1.1591 10 6 6.2825 -3.9241 1.0834 11 6 7.5849 -3.4000 0.4751 12 6 6.5561 -4.4631 2.4890 13 6 5.7258 -5.0474 0.2065 14 6 3.5713 -0.6885 -1.2643 15 1 3.9164 0.3401 -1.3686 16 6 4.0833 -1.5124 -2.4176 17 8 3.7717 -2.6807 -2.5138 18 7 4.8873 -0.9511 -3.3423 19 6 5.2632 0.4600 -3.2264 20 6 5.3845 -1.7520 -4.4638 21 6 6.6933 -2.3938 -4.0814 22 1 7.1126 -2.2225 -3.1010 23 6 7.3554 -3.1995 -4.9833 24 7 6.8451 -3.4076 -6.1773 25 14 8.9774 -3.9955 -4.5091 26 1 9.3330 -3.6056 -3.1210 27 1 8.8465 -5.4725 -4.5908 28 1 10.0424 -3.5408 -5.4387 29 6 2.0398 -0.7207 -1.2501 30 1 -0.3633 0.5144 0.8897 31 1 -0.3633 0.5134 -0.8903 32 1 -0.3633 -1.0276 0.0005 33 1 1.6978 -1.7556 1.2383 34 1 1.6573 -0.2208 2.1398 35 1 3.9417 -1.2846 2.0983 36 1 3.9165 0.3401 1.3685 37 1 7.9815 -2.5998 1.0999 38 1 8.3115 -4.2105 0.4187 39 1 7.3896 -3.0163 -0.5262 40 1 5.6282 -4.8365 2.9219 41 1 7.2830 -5.2734 2.4323 42 1 6.9526 -3.6630 3.1141 43 1 5.5305 -4.6638 -0.7949 44 1 6.4525 -5.8578 0.1493 45 1 4.7979 -5.4208 0.6398 46 1 4.5332 1.0750 -3.7528 47 1 5.2870 0.7446 -2.1745 48 1 6.2493 0.6106 -3.6658 49 1 5.5348 -1.1089 -5.3310 50 1 4.6575 -2.5267 -4.7075 51 1 6.0030 -2.9940 -6.4237 52 1 1.6572 -0.2207 -2.1398 53 1 1.6977 -1.7555 -1.2384 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495491887.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:55 Heat of formation + Delta-G solvation = -132.396786 kcal Electronic energy + Delta-G solvation = -33710.673703 eV Core-core repulsion = 29581.970289 eV Total energy + Delta-G solvation = -4128.703414 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.28645 -40.73018 -39.12821 -37.70358 -36.58571 -35.42164 -34.92256 -34.44201 -32.46601 -29.59366 -29.07924 -28.41894 -28.29856 -27.30004 -25.84636 -24.67196 -24.30465 -23.03679 -21.26261 -20.58155 -20.01525 -18.98098 -18.67814 -17.91303 -17.56803 -17.02596 -16.98271 -16.32221 -16.09128 -15.71925 -15.54709 -15.47527 -15.04385 -15.02341 -14.74774 -14.58311 -14.45223 -14.11918 -13.95281 -13.75539 -13.56520 -13.33643 -13.27509 -13.17676 -12.92552 -12.89547 -12.84636 -12.79328 -12.66448 -12.53753 -12.43396 -12.30351 -12.20404 -12.02412 -11.98128 -11.60755 -11.39640 -11.34929 -11.12992 -10.71848 -10.57254 -10.43294 -9.74328 -9.31964 -8.61350 -6.32416 0.96198 1.41488 1.53338 1.70474 1.89533 1.98834 2.36417 2.52810 2.92193 3.15162 3.49877 3.72229 3.74325 3.76098 3.79179 3.89344 3.92503 4.01323 4.06732 4.30554 4.39402 4.49399 4.54581 4.56920 4.60235 4.66709 4.68918 4.70212 4.70984 4.75251 4.77792 4.84298 4.87175 4.87513 4.94321 4.99301 5.04152 5.06862 5.11138 5.16791 5.28039 5.34735 5.37826 5.47664 5.49601 5.51972 5.68506 5.93593 6.29736 6.32664 6.55131 6.79277 7.36548 7.41998 7.63971 8.72587 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010042 B = 0.005449 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2787.704527 B = 5136.954292 C = 7232.547878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.082 4.082 3 H 0.100 0.900 4 C -0.125 4.125 5 C 0.111 3.889 6 N -0.590 5.590 7 C 0.621 3.379 8 O -0.539 6.539 9 O -0.360 6.360 10 C 0.133 3.867 11 C -0.178 4.178 12 C -0.126 4.126 13 C -0.179 4.179 14 C 0.147 3.853 15 H 0.122 0.878 16 C 0.523 3.477 17 O -0.583 6.583 18 N -0.607 5.607 19 C 0.080 3.920 20 C 0.257 3.743 21 C -0.579 4.579 22 H 0.041 0.959 23 C -0.038 4.038 24 N -0.942 5.942 25 Si 1.118 2.882 26 H -0.279 1.279 27 H -0.285 1.285 28 H -0.268 1.268 29 C -0.112 4.112 30 H 0.078 0.922 31 H 0.059 0.941 32 H 0.041 0.959 33 H 0.047 0.953 34 H 0.113 0.887 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.044 0.956 40 H 0.073 0.927 41 H 0.097 0.903 42 H 0.079 0.921 43 H 0.042 0.958 44 H 0.082 0.918 45 H 0.060 0.940 46 H 0.077 0.923 47 H 0.084 0.916 48 H 0.060 0.940 49 H 0.013 0.987 50 H -0.017 1.017 51 H 0.252 0.748 52 H 0.086 0.914 53 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.932 10.807 22.597 26.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.100 4.100 3 H 0.119 0.881 4 C -0.163 4.163 5 C -0.010 4.010 6 N -0.334 5.334 7 C 0.375 3.625 8 O -0.425 6.425 9 O -0.275 6.275 10 C 0.097 3.903 11 C -0.235 4.235 12 C -0.183 4.183 13 C -0.236 4.236 14 C 0.042 3.958 15 H 0.139 0.861 16 C 0.312 3.688 17 O -0.462 6.462 18 N -0.340 5.340 19 C -0.062 4.062 20 C 0.136 3.864 21 C -0.618 4.618 22 H 0.059 0.941 23 C -0.235 4.235 24 N -0.581 5.581 25 Si 0.941 3.059 26 H -0.204 1.204 27 H -0.211 1.211 28 H -0.193 1.193 29 C -0.151 4.151 30 H 0.097 0.903 31 H 0.078 0.922 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.131 0.869 35 H 0.112 0.888 36 H 0.117 0.883 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.063 0.937 40 H 0.092 0.908 41 H 0.116 0.884 42 H 0.098 0.902 43 H 0.061 0.939 44 H 0.101 0.899 45 H 0.079 0.921 46 H 0.096 0.904 47 H 0.102 0.898 48 H 0.079 0.921 49 H 0.031 0.969 50 H 0.001 0.999 51 H 0.061 0.939 52 H 0.104 0.896 53 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.666 9.043 21.703 24.438 hybrid contribution -1.181 0.342 -0.503 1.328 sum -7.847 9.384 21.201 24.477 Atomic orbital electron populations 1.21782 0.93588 1.01605 1.02992 1.21133 0.96767 1.00023 0.92119 0.88134 1.22014 0.93857 1.00986 0.99469 1.22050 0.95195 1.00479 0.83252 1.46913 1.43815 1.34640 1.08078 1.18610 0.80642 0.80538 0.82699 1.91237 1.55636 1.64163 1.31483 1.86206 1.59979 1.49216 1.32103 1.22268 0.85874 0.83454 0.98730 1.22429 0.96846 1.02568 1.01674 1.21819 1.03428 1.02027 0.90990 1.22424 1.01724 0.98793 1.00646 1.21401 0.96415 0.97335 0.80666 0.86054 1.20422 0.78038 0.87227 0.83085 1.90602 1.60738 1.18685 1.76211 1.47778 1.47851 1.12098 1.26246 1.21906 1.01368 0.80180 1.02790 1.18702 0.93261 0.89701 0.84783 1.22445 1.06541 1.31545 1.01223 0.94065 1.27184 1.07000 0.95968 0.93302 1.70861 1.20687 1.45094 1.21411 0.82927 0.71773 0.75671 0.75547 1.20417 1.21114 1.19340 1.21931 0.90545 1.01480 1.01166 0.90275 0.92175 0.93967 0.93399 0.86924 0.88761 0.88326 0.90946 0.90038 0.93698 0.90822 0.88437 0.90175 0.93867 0.89904 0.92097 0.90411 0.89765 0.92129 0.96910 0.99891 0.93877 0.89597 0.93729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.19 71.98 0.66 -1.23 16 2 C -0.08 -1.28 2.68 -10.77 -0.03 -1.31 16 3 H 0.10 1.12 8.14 -2.38 -0.02 1.10 16 4 C -0.13 -1.91 5.36 30.67 0.16 -1.74 16 5 C 0.11 2.07 6.46 86.36 0.56 2.63 16 6 N -0.59 -18.00 2.97 -929.43 -2.76 -20.76 16 7 C 0.62 24.16 7.43 129.79 0.96 25.12 16 8 O -0.54 -26.78 7.50 27.64 0.21 -26.57 16 9 O -0.36 -11.81 8.53 -55.52 -0.47 -12.29 16 10 C 0.13 4.08 1.13 -10.79 -0.01 4.07 16 11 C -0.18 -5.91 8.37 71.98 0.60 -5.31 16 12 C -0.13 -2.48 8.85 71.98 0.64 -1.84 16 13 C -0.18 -6.38 8.37 71.98 0.60 -5.78 16 14 C 0.15 4.60 2.92 44.23 0.13 4.73 16 15 H 0.12 2.97 5.45 -2.39 -0.01 2.96 16 16 C 0.52 24.00 4.17 87.66 0.37 24.36 16 17 O -0.58 -33.40 14.24 20.44 0.29 -33.11 16 18 N -0.61 -28.48 2.86 -851.11 -2.43 -30.91 16 19 C 0.08 2.66 10.03 127.77 1.28 3.94 16 20 C 0.26 15.04 4.47 85.63 0.38 15.42 16 21 C -0.58 -36.50 9.39 25.60 0.24 -36.26 16 22 H 0.04 2.70 7.63 -2.91 -0.02 2.68 16 23 C -0.04 -2.41 5.46 84.65 0.46 -1.94 16 24 N -0.94 -62.42 13.65 21.44 0.29 -62.12 16 25 Si 1.12 56.31 29.90 68.60 2.05 58.36 16 26 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 27 H -0.28 -14.10 7.11 99.48 0.71 -13.39 16 28 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 29 C -0.11 -2.88 4.59 30.67 0.14 -2.74 16 30 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.09 1.75 6.92 -2.38 -0.02 1.73 16 36 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 37 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 39 H 0.04 1.99 5.88 -2.39 -0.01 1.98 16 40 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.04 2.08 5.88 -2.39 -0.01 2.06 16 44 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 45 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 46 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 47 H 0.08 2.28 5.98 -2.38 -0.01 2.27 16 48 H 0.06 2.16 8.07 -2.38 -0.02 2.14 16 49 H 0.01 0.75 7.94 -2.38 -0.02 0.73 16 50 H -0.02 -1.13 7.29 -2.39 -0.02 -1.15 16 51 H 0.25 16.93 7.22 -92.71 -0.67 16.26 16 52 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 53 H 0.04 1.46 7.92 -2.39 -0.02 1.44 16 Total: -1.00 -91.80 406.29 5.30 -86.50 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: 0.97 Total: 18.79 kcal Atomic # 6 Polarization: 14.97 SS G_CDS: 7.15 Total: 22.12 kcal Atomic # 7 Polarization: -108.89 SS G_CDS: -4.90 Total: -113.79 kcal Atomic # 8 Polarization: -72.00 SS G_CDS: 0.02 Total: -71.97 kcal Atomic # 14 Polarization: 56.31 SS G_CDS: 2.05 Total: 58.36 kcal Total: -91.80 5.30 -86.50 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495491887.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.900 kcal (2) G-P(sol) polarization free energy of solvation -91.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds