Wall clock time and date at job start Wed Apr 1 2020 00:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47325 * 2 1 4 4 C 1.50692 * 109.47175 * 120.00232 * 2 1 3 5 5 H 1.08004 * 120.00154 * 119.99592 * 4 2 1 6 6 C 1.37879 * 120.00210 * 299.99945 * 4 2 1 7 7 N 1.31517 * 119.99954 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00262 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47176 * 59.99528 * 8 6 4 10 10 H 1.48501 * 109.47000 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46614 * 299.99592 * 8 6 4 12 12 N 1.46496 * 109.46941 * 240.00311 * 2 1 3 13 13 C 1.34779 * 120.00266 * 85.00134 * 12 2 1 14 14 O 1.21280 * 120.00103 * 359.97438 * 13 12 2 15 15 C 1.50704 * 120.00148 * 180.02562 * 13 12 2 16 16 H 1.08999 * 109.69808 * 353.33887 * 15 13 12 17 17 C 1.53193 * 109.58410 * 232.98835 * 15 13 12 18 18 C 1.53042 * 109.31004 * 185.57791 * 17 15 13 19 19 H 1.09005 * 109.45512 * 301.34039 * 18 17 15 20 20 C 1.53000 * 109.45951 * 181.38689 * 18 17 15 21 21 C 1.53038 * 109.53765 * 61.36445 * 18 17 15 22 22 C 1.53194 * 109.31350 * 298.63192 * 21 18 17 23 23 N 1.46922 * 108.77511 * 54.63508 * 22 21 18 24 24 C 1.34777 * 120.62838 * 126.41068 * 23 22 21 25 25 O 1.21512 * 120.00120 * 184.03518 * 24 23 22 26 26 O 1.34633 * 120.00061 * 4.03961 * 24 23 22 27 27 C 1.45202 * 116.99862 * 179.97438 * 26 24 23 28 28 C 1.53001 * 109.46989 * 60.00327 * 27 26 24 29 29 C 1.53004 * 109.47099 * 179.97438 * 27 26 24 30 30 C 1.52996 * 109.47378 * 299.99653 * 27 26 24 31 31 H 1.08999 * 109.46821 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46585 * 300.00093 * 1 2 3 33 33 H 1.08998 * 109.47210 * 59.99609 * 1 2 3 34 34 H 0.96993 * 120.00077 * 180.02562 * 7 6 4 35 35 H 0.97003 * 120.00257 * 265.00350 * 12 2 1 36 36 H 1.08997 * 109.49796 * 305.52515 * 17 15 13 37 37 H 1.08996 * 109.49625 * 65.62587 * 17 15 13 38 38 H 1.08995 * 109.47277 * 59.99153 * 20 18 17 39 39 H 1.08995 * 109.46949 * 179.97438 * 20 18 17 40 40 H 1.09005 * 109.46543 * 299.99738 * 20 18 17 41 41 H 1.09007 * 109.49466 * 178.68563 * 21 18 17 42 42 H 1.08991 * 109.50204 * 58.58787 * 21 18 17 43 43 H 1.09000 * 109.58558 * 294.85158 * 22 21 18 44 44 H 1.08997 * 109.58595 * 174.42388 * 22 21 18 45 45 H 1.08995 * 109.47418 * 59.99924 * 28 27 26 46 46 H 1.09004 * 109.46922 * 180.02562 * 28 27 26 47 47 H 1.09005 * 109.47188 * 299.99224 * 28 27 26 48 48 H 1.08998 * 109.47325 * 59.99692 * 29 27 26 49 49 H 1.08991 * 109.47343 * 179.97438 * 29 27 26 50 50 H 1.09006 * 109.46779 * 300.00037 * 29 27 26 51 51 H 1.09003 * 109.46620 * 59.99985 * 30 27 26 52 52 H 1.08994 * 109.47535 * 179.97438 * 30 27 26 53 53 H 1.09000 * 109.47565 * 300.00454 * 30 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3226 -1.1197 4.0079 9 1 3.8075 -1.1192 4.0076 10 1 1.8270 -0.4201 5.2204 11 1 1.8280 -2.5199 4.0080 12 7 2.0183 -0.6905 -1.1962 13 6 2.1471 -0.0182 -2.3572 14 8 1.8582 1.1585 -2.4117 15 6 2.6488 -0.7287 -3.5878 16 1 2.9665 -1.7378 -3.3256 17 6 3.8312 0.0441 -4.1807 18 6 4.2465 -0.6032 -5.5039 19 1 4.5166 -1.6448 -5.3295 20 6 5.4494 0.1450 -6.0819 21 6 3.0813 -0.5374 -6.4938 22 6 1.8904 -1.3168 -5.9271 23 7 1.5766 -0.7947 -4.5901 24 6 0.3287 -0.3842 -4.2888 25 8 0.0980 0.1135 -3.2045 26 8 -0.6623 -0.5258 -5.1890 27 6 -1.9811 -0.0622 -4.7960 28 6 -1.9227 1.4339 -4.4808 29 6 -2.9683 -0.3036 -5.9397 30 6 -2.4417 -0.8276 -3.5540 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3632 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 0.7096 1.1617 3.4844 35 1 2.2490 -1.6317 -1.1527 36 1 3.5374 1.0786 -4.3583 37 1 4.6691 0.0178 -3.4840 38 1 6.2798 0.0973 -5.3775 39 1 5.7456 -0.3162 -7.0240 40 1 5.1799 1.1868 -6.2558 41 1 3.3854 -0.9777 -7.4435 42 1 2.7945 0.5025 -6.6496 43 1 2.1462 -2.3740 -5.8557 44 1 1.0271 -1.1909 -6.5805 45 1 -1.5946 1.9792 -5.3656 46 1 -2.9125 1.7818 -4.1853 47 1 -1.2193 1.6063 -3.6661 48 1 -3.0100 -1.3693 -6.1649 49 1 -3.9583 0.0440 -5.6446 50 1 -2.6400 0.2421 -6.8244 51 1 -1.7382 -0.6552 -2.7394 52 1 -3.4313 -0.4793 -3.2587 53 1 -2.4832 -1.8934 -3.7786 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495493350.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:18 Heat of formation + Delta-G solvation = -141.402098 kcal Electronic energy + Delta-G solvation = -33075.049259 eV Core-core repulsion = 28945.955345 eV Total energy + Delta-G solvation = -4129.093914 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.21881 -40.60220 -39.07629 -37.65402 -36.50807 -35.40851 -34.47580 -34.19613 -32.51669 -30.56577 -29.22668 -28.38361 -28.27631 -27.29535 -25.60169 -24.46338 -23.65540 -22.40630 -21.33126 -20.92140 -20.18257 -19.27726 -18.31264 -17.57463 -17.46710 -17.09451 -16.91625 -16.51522 -15.91674 -15.73893 -15.44571 -15.39934 -15.03173 -14.81163 -14.69212 -14.52982 -14.40772 -14.27380 -13.94839 -13.57147 -13.26015 -13.15026 -12.98099 -12.88360 -12.85023 -12.83328 -12.79499 -12.65859 -12.65679 -12.49569 -12.30564 -12.21502 -12.17076 -12.13276 -11.97465 -11.57541 -11.36920 -11.33117 -11.04474 -10.69335 -10.59540 -10.34242 -9.76363 -9.51760 -8.14404 -6.32728 0.99199 1.42861 1.46351 1.53978 1.86410 2.16477 2.36430 2.62916 2.99629 3.14891 3.71610 3.77222 3.79446 3.80329 3.85443 3.95384 4.00787 4.12807 4.18597 4.42984 4.52376 4.58393 4.63460 4.70150 4.71762 4.74042 4.74560 4.80451 4.81427 4.89346 4.89810 4.97421 5.04917 5.08885 5.11476 5.17252 5.19199 5.21392 5.29967 5.37337 5.39429 5.48071 5.51295 5.52332 5.54439 5.68089 5.79514 5.99730 6.16611 6.34938 6.76882 7.12200 7.34991 7.41039 7.81899 8.91642 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009983 B = 0.004278 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2804.020431 B = 6543.250120 C = 8733.012863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.286 3.714 3 H -0.013 1.013 4 C -0.547 4.547 5 H 0.072 0.928 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.974 3.026 9 H -0.268 1.268 10 H -0.286 1.286 11 H -0.264 1.264 12 N -0.708 5.708 13 C 0.521 3.479 14 O -0.581 6.581 15 C 0.150 3.850 16 H 0.116 0.884 17 C -0.112 4.112 18 C -0.083 4.083 19 H 0.097 0.903 20 C -0.143 4.143 21 C -0.125 4.125 22 C 0.111 3.889 23 N -0.588 5.588 24 C 0.625 3.375 25 O -0.546 6.546 26 O -0.359 6.359 27 C 0.132 3.868 28 C -0.178 4.178 29 C -0.128 4.128 30 C -0.178 4.178 31 H 0.021 0.979 32 H 0.055 0.945 33 H 0.019 0.981 34 H 0.264 0.736 35 H 0.396 0.604 36 H 0.047 0.953 37 H 0.082 0.918 38 H 0.057 0.943 39 H 0.077 0.923 40 H 0.042 0.958 41 H 0.111 0.889 42 H 0.049 0.951 43 H 0.097 0.903 44 H 0.095 0.905 45 H 0.062 0.938 46 H 0.084 0.916 47 H 0.046 0.954 48 H 0.076 0.924 49 H 0.097 0.903 50 H 0.073 0.927 51 H 0.049 0.951 52 H 0.082 0.918 53 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.057 -8.708 -23.467 25.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.183 3.817 3 H 0.005 0.995 4 C -0.585 4.585 5 H 0.090 0.910 6 C -0.188 4.188 7 N -0.558 5.558 8 Si 0.798 3.202 9 H -0.193 1.193 10 H -0.212 1.212 11 H -0.189 1.189 12 N -0.358 5.358 13 C 0.308 3.692 14 O -0.461 6.461 15 C 0.044 3.956 16 H 0.134 0.866 17 C -0.151 4.151 18 C -0.102 4.102 19 H 0.116 0.884 20 C -0.200 4.200 21 C -0.163 4.163 22 C -0.009 4.009 23 N -0.331 5.331 24 C 0.379 3.621 25 O -0.432 6.432 26 O -0.275 6.275 27 C 0.096 3.904 28 C -0.235 4.235 29 C -0.185 4.185 30 C -0.235 4.235 31 H 0.041 0.959 32 H 0.073 0.927 33 H 0.038 0.962 34 H 0.073 0.927 35 H 0.230 0.770 36 H 0.066 0.934 37 H 0.100 0.900 38 H 0.076 0.924 39 H 0.096 0.904 40 H 0.062 0.938 41 H 0.129 0.871 42 H 0.067 0.933 43 H 0.115 0.885 44 H 0.114 0.886 45 H 0.081 0.919 46 H 0.103 0.897 47 H 0.065 0.935 48 H 0.095 0.905 49 H 0.116 0.884 50 H 0.092 0.908 51 H 0.068 0.932 52 H 0.101 0.899 53 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.581 -7.569 -23.038 24.256 hybrid contribution 0.035 0.031 1.523 1.524 sum 0.616 -7.538 -21.514 22.805 Atomic orbital electron populations 1.21703 0.98713 0.98031 0.99066 1.18081 0.90744 0.91146 0.81758 0.99497 1.21574 1.32475 1.13473 0.91007 0.90967 1.25862 0.94889 0.95608 1.02437 1.70095 1.37165 1.24121 1.24448 0.85372 0.78765 0.78606 0.77408 1.19251 1.21167 1.18909 1.46104 1.66244 1.13416 1.10036 1.20377 0.76723 0.87343 0.84712 1.90597 1.51410 1.19115 1.85017 1.21269 0.87409 1.01114 0.85782 0.86595 1.21905 0.95318 0.98955 0.98914 1.21133 0.95595 1.01036 0.92404 0.88428 1.21784 0.96784 0.99819 1.01633 1.22011 0.94057 1.00492 0.99738 1.22030 0.99660 0.98921 0.80301 1.46897 1.04431 1.66585 1.15214 1.18555 0.82512 0.78190 0.82820 1.91155 1.81359 1.46717 1.24015 1.86228 1.18699 1.78348 1.44191 1.22280 0.78151 0.93347 0.96654 1.22425 1.03571 0.95305 1.02200 1.21829 0.96997 1.03797 0.95866 1.22436 1.02672 1.00523 0.97916 0.95942 0.92659 0.96228 0.92730 0.77026 0.93406 0.89979 0.92398 0.90370 0.93838 0.87078 0.93255 0.88528 0.88618 0.91932 0.89749 0.93538 0.90538 0.88439 0.90796 0.93238 0.89874 0.91440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.65 9.26 71.98 0.67 -5.98 16 2 C 0.29 16.27 2.56 44.24 0.11 16.39 16 3 H -0.01 -0.87 7.58 -2.39 -0.02 -0.88 16 4 C -0.55 -30.84 8.73 25.60 0.22 -30.61 16 5 H 0.07 3.76 7.74 -2.91 -0.02 3.74 16 6 C 0.01 0.66 5.30 84.65 0.45 1.10 16 7 N -0.92 -55.98 11.32 21.45 0.24 -55.74 16 8 Si 0.97 43.81 29.54 68.60 2.03 45.83 16 9 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 10 H -0.29 -12.74 7.11 99.48 0.71 -12.04 16 11 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 12 N -0.71 -32.69 5.07 -446.10 -2.26 -34.96 16 13 C 0.52 22.92 4.33 87.66 0.38 23.30 16 14 O -0.58 -31.59 14.20 20.66 0.29 -31.29 16 15 C 0.15 4.54 3.31 44.23 0.15 4.68 16 16 H 0.12 2.76 7.94 -2.39 -0.02 2.74 16 17 C -0.11 -2.89 4.57 30.67 0.14 -2.75 16 18 C -0.08 -1.34 2.68 -10.77 -0.03 -1.37 16 19 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16 20 C -0.14 -2.01 9.19 71.98 0.66 -1.35 16 21 C -0.12 -1.86 5.36 30.67 0.16 -1.69 16 22 C 0.11 1.97 6.43 86.36 0.56 2.52 16 23 N -0.59 -16.74 2.97 -929.42 -2.76 -19.50 16 24 C 0.62 22.08 7.61 129.79 0.99 23.07 16 25 O -0.55 -24.26 6.08 27.68 0.17 -24.09 16 26 O -0.36 -10.56 8.54 -55.42 -0.47 -11.03 16 27 C 0.13 3.52 1.13 -10.79 -0.01 3.51 16 28 C -0.18 -5.36 8.37 71.98 0.60 -4.75 16 29 C -0.13 -2.17 8.85 71.98 0.64 -1.53 16 30 C -0.18 -5.19 8.37 71.98 0.60 -4.59 16 31 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.05 3.41 6.07 -2.39 -0.01 3.39 16 33 H 0.02 1.12 6.75 -2.39 -0.02 1.10 16 34 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 35 H 0.40 15.62 8.40 -92.71 -0.78 14.84 16 36 H 0.05 1.55 7.85 -2.39 -0.02 1.53 16 37 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.04 0.72 8.14 -2.38 -0.02 0.70 16 41 H 0.11 0.94 8.14 -2.38 -0.02 0.92 16 42 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.10 1.64 6.95 -2.39 -0.02 1.62 16 45 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 46 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 47 H 0.05 1.90 5.88 -2.38 -0.01 1.89 16 48 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 49 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 50 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 51 H 0.05 1.93 5.88 -2.39 -0.01 1.92 16 52 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 53 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -80.84 404.73 3.63 -77.21 By element: Atomic # 1 Polarization: 33.52 SS G_CDS: 0.11 Total: 33.62 kcal Atomic # 6 Polarization: 13.66 SS G_CDS: 6.29 Total: 19.94 kcal Atomic # 7 Polarization: -105.42 SS G_CDS: -4.78 Total: -110.20 kcal Atomic # 8 Polarization: -66.40 SS G_CDS: -0.01 Total: -66.41 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Total: -80.84 3.63 -77.21 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495493350.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.190 kcal (2) G-P(sol) polarization free energy of solvation -80.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds