Wall clock time and date at job start Wed Apr 1 2020 00:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.45884 * 2 1 4 4 C 1.53039 * 109.45758 * 240.02905 * 2 1 3 5 5 C 1.53200 * 109.31160 * 178.62691 * 4 2 1 6 6 N 1.46931 * 108.77279 * 54.63574 * 5 4 2 7 7 C 1.34773 * 120.63029 * 126.41292 * 6 5 4 8 8 O 1.21503 * 119.99990 * 179.97438 * 7 6 5 9 9 O 1.34639 * 119.99959 * 359.97438 * 7 6 5 10 10 C 1.45199 * 117.00028 * 179.97438 * 9 7 6 11 11 C 1.53003 * 109.47104 * 59.99843 * 10 9 7 12 12 C 1.53001 * 109.47054 * 179.97438 * 10 9 7 13 13 C 1.53002 * 109.47134 * 300.00070 * 10 9 7 14 14 C 1.46928 * 118.73792 * 306.39072 * 6 5 4 15 15 H 1.08999 * 109.58766 * 173.40097 * 14 6 5 16 16 C 1.50701 * 109.58631 * 293.68105 * 14 6 5 17 17 O 1.21287 * 120.00001 * 19.99853 * 16 14 6 18 18 N 1.34779 * 119.99924 * 200.00401 * 16 14 6 19 19 C 1.46502 * 119.99833 * 179.97438 * 18 16 14 20 20 C 1.53002 * 109.46913 * 179.97438 * 19 18 16 21 21 C 1.50701 * 109.47004 * 180.02562 * 20 19 18 22 22 H 1.08004 * 119.99798 * 0.02562 * 21 20 19 23 23 C 1.37875 * 119.99912 * 180.02562 * 21 20 19 24 24 N 1.31511 * 119.99901 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99884 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47127 * 89.99699 * 25 23 21 27 27 H 1.48498 * 109.47222 * 210.00044 * 25 23 21 28 28 H 1.48505 * 109.47048 * 329.99810 * 25 23 21 29 29 C 1.53046 * 109.46126 * 119.97399 * 2 1 3 30 30 H 1.09001 * 109.46935 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46843 * 299.99847 * 1 2 3 32 32 H 1.08991 * 109.47356 * 59.99781 * 1 2 3 33 33 H 1.08997 * 109.49901 * 298.57269 * 4 2 1 34 34 H 1.08992 * 109.50107 * 58.67848 * 4 2 1 35 35 H 1.08998 * 109.58358 * 174.41666 * 5 4 2 36 36 H 1.08995 * 109.58474 * 294.70356 * 5 4 2 37 37 H 1.08999 * 109.47300 * 59.99879 * 11 10 9 38 38 H 1.08995 * 109.47085 * 180.02562 * 11 10 9 39 39 H 1.09002 * 109.46838 * 299.99729 * 11 10 9 40 40 H 1.08995 * 109.46860 * 60.00158 * 12 10 9 41 41 H 1.09008 * 109.46891 * 180.02562 * 12 10 9 42 42 H 1.08999 * 109.46861 * 299.99821 * 12 10 9 43 43 H 1.09002 * 109.47664 * 59.99746 * 13 10 9 44 44 H 1.08995 * 109.47362 * 179.97438 * 13 10 9 45 45 H 1.09000 * 109.46933 * 299.99867 * 13 10 9 46 46 H 0.96991 * 120.00076 * 359.97438 * 18 16 14 47 47 H 1.09000 * 109.47403 * 299.99932 * 19 18 16 48 48 H 1.09005 * 109.47005 * 59.99537 * 19 18 16 49 49 H 1.08993 * 109.47160 * 299.99781 * 20 19 18 50 50 H 1.08999 * 109.46834 * 60.00260 * 20 19 18 51 51 H 0.97000 * 119.99601 * 180.02562 * 24 23 21 52 52 H 1.08996 * 109.49379 * 301.32134 * 29 2 1 53 53 H 1.08994 * 109.49581 * 61.41903 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0398 -0.7209 -1.2500 5 6 3.5714 -0.6890 -1.2641 6 7 4.0676 -1.2493 0.0003 7 6 4.9616 -2.2579 0.0004 8 8 5.3647 -2.7123 1.0527 9 8 5.4081 -2.7619 -1.1656 10 6 6.3703 -3.8466 -1.0895 11 6 5.7489 -5.0281 -0.3420 12 6 6.7576 -4.2849 -2.5033 13 6 7.6180 -3.3701 -0.3430 14 6 3.5711 -0.6890 1.2645 15 1 3.9412 -1.2849 2.0987 16 6 4.0484 0.7332 1.4087 17 8 4.4100 1.3536 0.4312 18 7 4.0734 1.3157 2.6238 19 6 4.5379 2.6980 2.7641 20 6 4.4659 3.1135 4.2348 21 6 4.9431 4.5356 4.3790 22 1 5.2651 5.0880 3.5086 23 6 4.9687 5.1315 5.6221 24 7 4.5770 4.4587 6.6820 25 14 5.5595 6.8946 5.8007 26 1 4.4073 7.8200 5.6552 27 1 6.1750 7.0772 7.1397 28 1 6.5661 7.1883 4.7491 29 6 2.0399 -0.7209 1.2500 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.6977 -1.7557 -1.2382 34 1 1.6574 -0.2208 -2.1398 35 1 3.9416 -1.2851 -2.0981 36 1 3.9145 0.3402 -1.3697 37 1 4.8600 -5.3676 -0.8737 38 1 6.4714 -5.8422 -0.2845 39 1 5.4728 -4.7161 0.6653 40 1 7.2001 -3.4433 -3.0361 41 1 7.4796 -5.0995 -2.4461 42 1 5.8685 -4.6245 -3.0347 43 1 7.3418 -3.0580 0.6643 44 1 8.3401 -4.1844 -0.2854 45 1 8.0607 -2.5283 -0.8755 46 1 3.7839 0.8197 3.4054 47 1 5.5679 2.7724 2.4151 48 1 3.9044 3.3563 2.1694 49 1 3.4359 3.0392 4.5833 50 1 5.0992 2.4553 4.8297 51 1 4.5946 4.8781 7.5565 52 1 1.6575 -0.2208 2.1398 53 1 1.6977 -1.7557 1.2382 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495575748.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:03 Heat of formation + Delta-G solvation = -158.678435 kcal Electronic energy + Delta-G solvation = -31537.539608 eV Core-core repulsion = 27407.696536 eV Total energy + Delta-G solvation = -4129.843072 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.28838 -41.09162 -39.05869 -37.77890 -36.58738 -35.51934 -34.86401 -34.51186 -32.83880 -31.22976 -29.37796 -28.36543 -28.28164 -26.99283 -25.45355 -24.41391 -23.55283 -22.66441 -21.94646 -21.05568 -20.22268 -19.05993 -18.56934 -17.94479 -17.64681 -17.19935 -16.84399 -16.69402 -16.45602 -16.02283 -15.59191 -15.53332 -15.32100 -15.00756 -14.87550 -14.76503 -14.44676 -14.33062 -14.28320 -13.70323 -13.27371 -13.25970 -13.18860 -13.11835 -12.95206 -12.88370 -12.85551 -12.78068 -12.62551 -12.55390 -12.40767 -12.26004 -12.24779 -11.90954 -11.75438 -11.58072 -11.44715 -11.42302 -11.39959 -11.09754 -10.94707 -10.61775 -10.06757 -9.71216 -8.25267 -6.35919 0.91641 1.40589 1.41211 1.52515 1.54049 1.64594 2.23725 2.43573 2.76301 3.09474 3.59809 3.66383 3.71811 3.76490 3.80630 3.83473 3.95314 4.02039 4.18743 4.41782 4.44958 4.46990 4.50138 4.60907 4.62613 4.66021 4.72649 4.73990 4.76762 4.81024 4.82525 4.84712 4.88832 4.90194 4.99514 5.04228 5.11403 5.14993 5.24980 5.28442 5.32981 5.36571 5.38186 5.45570 5.46345 5.50536 5.56425 5.77026 6.14357 6.22482 6.53586 6.77187 7.15716 7.20098 7.33451 8.86566 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012658 B = 0.002671 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.445824 B =10479.290304 C =11836.283067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.099 4.099 3 H 0.050 0.950 4 C -0.116 4.116 5 C 0.105 3.895 6 N -0.575 5.575 7 C 0.652 3.348 8 O -0.591 6.591 9 O -0.362 6.362 10 C 0.123 3.877 11 C -0.176 4.176 12 C -0.134 4.134 13 C -0.182 4.182 14 C 0.144 3.856 15 H 0.122 0.878 16 C 0.501 3.499 17 O -0.569 6.569 18 N -0.714 5.714 19 C 0.145 3.855 20 C 0.023 3.977 21 C -0.547 4.547 22 H 0.058 0.942 23 C 0.008 3.992 24 N -0.926 5.926 25 Si 0.964 3.036 26 H -0.270 1.270 27 H -0.280 1.280 28 H -0.267 1.267 29 C -0.111 4.111 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.091 0.909 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.103 0.897 42 H 0.074 0.926 43 H 0.057 0.943 44 H 0.094 0.906 45 H 0.054 0.946 46 H 0.410 0.590 47 H 0.040 0.960 48 H 0.051 0.949 49 H 0.012 0.988 50 H 0.005 0.995 51 H 0.266 0.734 52 H 0.093 0.907 53 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.787 -20.564 -18.619 28.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.117 4.117 3 H 0.069 0.931 4 C -0.154 4.154 5 C -0.017 4.017 6 N -0.314 5.314 7 C 0.407 3.593 8 O -0.482 6.482 9 O -0.277 6.277 10 C 0.087 3.913 11 C -0.234 4.234 12 C -0.191 4.191 13 C -0.239 4.239 14 C 0.037 3.963 15 H 0.140 0.860 16 C 0.286 3.714 17 O -0.449 6.449 18 N -0.365 5.365 19 C 0.021 3.979 20 C -0.014 4.014 21 C -0.585 4.585 22 H 0.076 0.924 23 C -0.191 4.191 24 N -0.566 5.566 25 Si 0.789 3.211 26 H -0.196 1.196 27 H -0.205 1.205 28 H -0.192 1.192 29 C -0.149 4.149 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.110 0.890 35 H 0.116 0.884 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.109 0.891 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.122 0.878 42 H 0.093 0.907 43 H 0.076 0.924 44 H 0.112 0.888 45 H 0.073 0.927 46 H 0.246 0.754 47 H 0.059 0.941 48 H 0.069 0.931 49 H 0.030 0.970 50 H 0.024 0.976 51 H 0.075 0.925 52 H 0.112 0.888 53 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.359 -20.310 -18.870 28.064 hybrid contribution 0.534 1.046 1.078 1.594 sum -3.825 -19.265 -17.791 26.501 Atomic orbital electron populations 1.21746 0.92855 1.02720 1.02241 1.21153 0.97345 0.98768 0.94470 0.93102 1.21915 0.93095 1.01846 0.98573 1.21992 0.95678 1.00027 0.83990 1.46635 1.43045 1.33552 1.08123 1.18047 0.78631 0.79933 0.82651 1.90881 1.61406 1.63401 1.32558 1.86308 1.58637 1.51426 1.31284 1.22470 0.86143 0.83745 0.98984 1.22448 1.02132 0.97406 1.01377 1.21874 1.03069 1.02507 0.91607 1.22488 0.97455 1.02676 1.01306 1.21089 0.97300 0.90245 0.87619 0.85989 1.21373 0.77525 0.89512 0.82949 1.90611 1.49515 1.66130 1.38598 1.46155 1.65624 1.15244 1.09449 1.21205 0.97525 0.80709 0.98460 1.19125 0.96539 0.95698 0.90043 1.21454 1.44275 0.98944 0.93870 0.92379 1.25865 0.95186 1.02626 0.95451 1.70056 1.48243 1.38861 0.99391 0.85457 0.78776 0.79297 0.77600 1.19555 1.20532 1.19186 1.21990 0.89047 1.03721 1.00148 0.91198 0.92713 0.91908 0.90192 0.88956 0.88433 0.91299 0.91440 0.89055 0.92056 0.91631 0.87831 0.90672 0.92438 0.88764 0.92733 0.75447 0.94126 0.93076 0.96951 0.97649 0.92511 0.88845 0.88209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.19 71.98 0.66 -1.42 16 2 C -0.10 -1.94 2.52 -10.76 -0.03 -1.97 16 3 H 0.05 1.32 7.09 -2.39 -0.02 1.31 16 4 C -0.12 -2.02 5.36 30.67 0.16 -1.86 16 5 C 0.10 2.43 5.94 86.36 0.51 2.94 16 6 N -0.57 -15.46 2.55 -929.46 -2.37 -17.83 16 7 C 0.65 18.81 7.74 129.79 1.00 19.82 16 8 O -0.59 -19.30 11.29 19.83 0.22 -19.07 16 9 O -0.36 -8.97 8.53 -55.48 -0.47 -9.44 16 10 C 0.12 2.39 1.13 -10.79 -0.01 2.38 16 11 C -0.18 -3.15 8.37 71.98 0.60 -2.55 16 12 C -0.13 -1.65 8.85 71.98 0.64 -1.01 16 13 C -0.18 -3.89 8.37 71.98 0.60 -3.29 16 14 C 0.14 3.85 3.00 44.22 0.13 3.98 16 15 H 0.12 3.28 7.00 -2.39 -0.02 3.27 16 16 C 0.50 17.08 6.16 87.66 0.54 17.62 16 17 O -0.57 -22.90 13.94 -3.05 -0.04 -22.94 16 18 N -0.71 -25.25 5.56 -463.04 -2.57 -27.82 16 19 C 0.14 6.29 5.61 86.38 0.48 6.77 16 20 C 0.02 1.19 5.09 29.85 0.15 1.34 16 21 C -0.55 -30.78 9.11 25.60 0.23 -30.55 16 22 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 23 C 0.01 0.43 5.46 84.65 0.46 0.89 16 24 N -0.93 -54.59 13.29 21.45 0.28 -54.31 16 25 Si 0.96 43.86 29.54 68.60 2.03 45.89 16 26 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 27 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 28 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 29 C -0.11 -2.20 4.82 30.66 0.15 -2.05 16 30 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.10 2.01 6.93 -2.39 -0.02 1.99 16 36 H 0.07 1.99 6.17 -2.39 -0.01 1.97 16 37 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.06 1.47 5.88 -2.39 -0.01 1.45 16 40 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.10 0.80 8.14 -2.38 -0.02 0.78 16 42 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.06 1.61 5.88 -2.39 -0.01 1.60 16 44 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 46 H 0.41 12.59 8.47 -92.71 -0.79 11.80 16 47 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 48 H 0.05 2.27 8.14 -2.38 -0.02 2.25 16 49 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 50 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 51 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 52 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 53 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -70.80 412.77 3.48 -67.32 By element: Atomic # 1 Polarization: 27.07 SS G_CDS: 0.10 Total: 27.16 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: 6.30 Total: 11.04 kcal Atomic # 7 Polarization: -95.30 SS G_CDS: -4.65 Total: -99.95 kcal Atomic # 8 Polarization: -51.17 SS G_CDS: -0.29 Total: -51.46 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -70.80 3.48 -67.32 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495575748.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.357 kcal (2) G-P(sol) polarization free energy of solvation -70.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds