Wall clock time and date at job start Wed Apr 1 2020 00:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.44691 * 2 1 4 4 C 1.53041 * 109.45772 * 119.96210 * 2 1 3 5 5 C 1.53193 * 109.31418 * 181.38585 * 4 2 1 6 6 N 1.46926 * 108.77453 * 305.36960 * 5 4 2 7 7 C 1.34778 * 120.62542 * 233.62588 * 6 5 4 8 8 O 1.21513 * 119.99982 * 186.20301 * 7 6 5 9 9 O 1.34634 * 120.00089 * 6.21171 * 7 6 5 10 10 C 1.45204 * 116.99917 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.46927 * 60.00088 * 10 9 7 12 12 C 1.53003 * 109.46959 * 179.97438 * 10 9 7 13 13 C 1.52993 * 109.47088 * 300.00160 * 10 9 7 14 14 C 1.46916 * 118.74139 * 53.60387 * 6 5 4 15 15 H 1.09007 * 109.70677 * 66.25084 * 14 6 5 16 16 C 1.50707 * 109.58654 * 186.60558 * 14 6 5 17 17 O 1.21280 * 119.99412 * 61.32916 * 16 14 6 18 18 N 1.34777 * 119.99864 * 241.32396 * 16 14 6 19 19 C 1.46502 * 119.99474 * 179.97438 * 18 16 14 20 20 C 1.53002 * 109.46762 * 180.02562 * 19 18 16 21 21 C 1.50694 * 109.46987 * 179.97438 * 20 19 18 22 22 H 1.08005 * 120.00423 * 0.02562 * 21 20 19 23 23 C 1.37877 * 119.99999 * 180.02562 * 21 20 19 24 24 N 1.31515 * 119.99997 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00180 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.47110 * 89.99843 * 25 23 21 27 27 H 1.48496 * 109.47327 * 209.99873 * 25 23 21 28 28 H 1.48496 * 109.47337 * 330.00527 * 25 23 21 29 29 C 1.53033 * 109.46066 * 240.02908 * 2 1 3 30 30 H 1.09002 * 109.47057 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47324 * 299.96950 * 1 2 3 32 32 H 1.08999 * 109.46983 * 59.97209 * 1 2 3 33 33 H 1.09002 * 109.49680 * 301.33621 * 4 2 1 34 34 H 1.08999 * 109.50232 * 61.43717 * 4 2 1 35 35 H 1.09005 * 109.58281 * 65.15334 * 5 4 2 36 36 H 1.08998 * 109.59085 * 185.42877 * 5 4 2 37 37 H 1.09004 * 109.47537 * 59.99667 * 11 10 9 38 38 H 1.08999 * 109.47618 * 179.97438 * 11 10 9 39 39 H 1.09003 * 109.47059 * 300.00058 * 11 10 9 40 40 H 1.09000 * 109.46697 * 60.00626 * 12 10 9 41 41 H 1.08996 * 109.46664 * 180.02562 * 12 10 9 42 42 H 1.08996 * 109.47119 * 300.00445 * 12 10 9 43 43 H 1.08994 * 109.47631 * 60.00170 * 13 10 9 44 44 H 1.09009 * 109.47172 * 179.97438 * 13 10 9 45 45 H 1.09004 * 109.47303 * 299.99452 * 13 10 9 46 46 H 0.96991 * 120.00087 * 0.02562 * 18 16 14 47 47 H 1.08998 * 109.47317 * 60.00415 * 19 18 16 48 48 H 1.08997 * 109.47294 * 300.00078 * 19 18 16 49 49 H 1.08995 * 109.47571 * 300.00328 * 20 19 18 50 50 H 1.08998 * 109.46992 * 60.00062 * 20 19 18 51 51 H 0.97005 * 120.00145 * 179.97438 * 24 23 21 52 52 H 1.08994 * 109.50027 * 58.66425 * 29 2 1 53 53 H 1.08996 * 109.52740 * 298.58099 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0398 -0.7207 1.2502 5 6 3.5714 -0.6885 1.2644 6 7 4.0679 -1.2488 0.0002 7 6 4.9615 -2.2577 0.0003 8 8 5.4497 -2.6371 -1.0458 9 8 5.3131 -2.8454 1.1595 10 6 6.2803 -3.9258 1.0840 11 6 7.5833 -3.4023 0.4766 12 6 6.5537 -4.4647 2.4897 13 6 5.7233 -5.0484 0.2063 14 6 3.5715 -0.6886 -1.2640 15 1 3.9143 0.3407 -1.3698 16 6 4.0835 -1.5127 -2.4173 17 8 3.7855 -2.6851 -2.5042 18 7 4.8724 -0.9466 -3.3521 19 6 5.3706 -1.7479 -4.4728 20 6 6.2363 -0.8720 -5.3807 21 6 6.7493 -1.6963 -6.5333 22 1 6.4840 -2.7404 -6.6108 23 6 7.5573 -1.1176 -7.4889 24 7 7.8807 0.1537 -7.3943 25 14 8.1937 -2.1395 -8.9172 26 1 7.2305 -2.0677 -10.0452 27 1 9.5102 -1.6110 -9.3561 28 1 8.3463 -3.5522 -8.4859 29 6 2.0399 -0.7208 -1.2500 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5134 0.8903 32 1 -0.3633 0.5143 -0.8897 33 1 1.6572 -0.2205 2.1399 34 1 1.6979 -1.7556 1.2385 35 1 3.9142 0.3410 1.3675 36 1 3.9416 -1.2822 2.1002 37 1 7.9801 -2.6025 1.1018 38 1 8.3095 -4.2132 0.4203 39 1 7.3888 -3.0181 -0.5248 40 1 5.6255 -4.8375 2.9227 41 1 7.2800 -5.2754 2.4330 42 1 6.9506 -3.6647 3.1146 43 1 5.5289 -4.6643 -0.7950 44 1 6.4496 -5.8594 0.1492 45 1 4.7950 -5.4215 0.6390 46 1 5.1109 -0.0091 -3.2823 47 1 4.5278 -2.1401 -5.0420 48 1 5.9676 -2.5758 -4.0905 49 1 5.6397 -0.0438 -5.7630 50 1 7.0790 -0.4801 -4.8113 51 1 8.4495 0.5607 -8.0665 52 1 1.6573 -0.2209 -2.1397 53 1 1.6979 -1.7557 -1.2387 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495575750.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:10 Heat of formation + Delta-G solvation = -151.300564 kcal Electronic energy + Delta-G solvation = -32150.701430 eV Core-core repulsion = 28021.178287 eV Total energy + Delta-G solvation = -4129.523143 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.31647 -40.71215 -39.14169 -37.74547 -36.47491 -35.45767 -34.78713 -34.49395 -32.67519 -31.27873 -29.29629 -28.40605 -28.30267 -27.04396 -25.30177 -24.48297 -23.54857 -22.66105 -21.46025 -21.13040 -20.20830 -19.09427 -18.54074 -17.76491 -17.67178 -17.08589 -16.80572 -16.53544 -16.38681 -15.99269 -15.56299 -15.48153 -15.27014 -15.05473 -14.79442 -14.62010 -14.48819 -14.35029 -14.26003 -13.94224 -13.30068 -13.22026 -13.17514 -12.96621 -12.90886 -12.88127 -12.82824 -12.72317 -12.54589 -12.52076 -12.38322 -12.27745 -12.18385 -12.01483 -11.66340 -11.61186 -11.46699 -11.39813 -11.36718 -10.83491 -10.61532 -10.57395 -9.93851 -9.75872 -8.25766 -6.36432 0.91364 1.38603 1.39944 1.51568 1.79467 1.93989 2.25416 2.42915 2.89920 3.08137 3.59866 3.74165 3.75644 3.76502 3.79774 3.92700 3.97008 4.06315 4.09912 4.39452 4.49194 4.50064 4.53802 4.56577 4.61353 4.67865 4.70076 4.72178 4.72847 4.79647 4.84817 4.87189 4.88491 4.95889 5.04375 5.07253 5.11927 5.17827 5.26568 5.31252 5.34141 5.38545 5.44411 5.47398 5.52833 5.55100 5.57693 5.78481 6.15981 6.26280 6.72116 6.75983 7.27428 7.32433 7.50329 8.86246 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010160 B = 0.003347 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2755.148992 B = 8364.190722 C =10449.160146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.085 4.085 3 H 0.097 0.903 4 C -0.125 4.125 5 C 0.110 3.890 6 N -0.588 5.588 7 C 0.634 3.366 8 O -0.561 6.561 9 O -0.359 6.359 10 C 0.130 3.870 11 C -0.178 4.178 12 C -0.129 4.129 13 C -0.178 4.178 14 C 0.149 3.851 15 H 0.120 0.880 16 C 0.525 3.475 17 O -0.574 6.574 18 N -0.717 5.717 19 C 0.156 3.844 20 C 0.028 3.972 21 C -0.548 4.548 22 H 0.053 0.947 23 C 0.008 3.992 24 N -0.925 5.925 25 Si 0.966 3.034 26 H -0.269 1.269 27 H -0.276 1.276 28 H -0.270 1.270 29 C -0.113 4.113 30 H 0.044 0.956 31 H 0.075 0.925 32 H 0.058 0.942 33 H 0.109 0.891 34 H 0.051 0.949 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.068 0.932 38 H 0.085 0.915 39 H 0.048 0.952 40 H 0.072 0.928 41 H 0.098 0.902 42 H 0.076 0.924 43 H 0.048 0.952 44 H 0.085 0.915 45 H 0.060 0.940 46 H 0.404 0.596 47 H 0.040 0.960 48 H 0.028 0.972 49 H 0.011 0.989 50 H 0.002 0.998 51 H 0.267 0.733 52 H 0.088 0.912 53 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.866 0.740 26.038 28.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.103 4.103 3 H 0.115 0.885 4 C -0.163 4.163 5 C -0.011 4.011 6 N -0.331 5.331 7 C 0.389 3.611 8 O -0.449 6.449 9 O -0.274 6.274 10 C 0.094 3.906 11 C -0.235 4.235 12 C -0.186 4.186 13 C -0.235 4.235 14 C 0.043 3.957 15 H 0.137 0.863 16 C 0.313 3.687 17 O -0.454 6.454 18 N -0.369 5.369 19 C 0.032 3.968 20 C -0.010 4.010 21 C -0.587 4.587 22 H 0.072 0.928 23 C -0.190 4.190 24 N -0.565 5.565 25 Si 0.790 3.210 26 H -0.194 1.194 27 H -0.202 1.202 28 H -0.194 1.194 29 C -0.152 4.152 30 H 0.063 0.937 31 H 0.094 0.906 32 H 0.077 0.923 33 H 0.128 0.872 34 H 0.070 0.930 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.087 0.913 38 H 0.104 0.896 39 H 0.067 0.933 40 H 0.091 0.909 41 H 0.117 0.883 42 H 0.095 0.905 43 H 0.067 0.933 44 H 0.104 0.896 45 H 0.079 0.921 46 H 0.239 0.761 47 H 0.058 0.942 48 H 0.047 0.953 49 H 0.030 0.970 50 H 0.021 0.979 51 H 0.076 0.924 52 H 0.107 0.893 53 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.763 -0.162 25.615 27.785 hybrid contribution 0.753 -0.285 -1.383 1.600 sum -10.011 -0.447 24.232 26.222 Atomic orbital electron populations 1.21786 0.93702 1.01718 1.02858 1.21137 0.96721 1.00036 0.92413 0.88479 1.22014 0.93803 1.01152 0.99379 1.22056 0.95224 1.00511 0.83260 1.46909 1.43618 1.34413 1.08168 1.18408 0.80124 0.80109 0.82487 1.91051 1.56681 1.65133 1.32043 1.86240 1.59986 1.49201 1.31935 1.22328 0.85996 0.83523 0.98785 1.22440 0.96727 1.02684 1.01691 1.21840 1.03441 1.02026 0.91300 1.22429 1.01858 0.98627 1.00611 1.21272 0.96603 0.97245 0.80555 0.86289 1.20443 0.77723 0.87566 0.83006 1.90616 1.59914 1.17912 1.76928 1.45941 1.50730 1.14330 1.25853 1.20975 0.95958 0.93768 0.86082 1.19089 0.93764 0.94792 0.93327 1.21437 1.31206 0.96890 1.09123 0.92842 1.25872 0.96036 0.96244 1.00891 1.70059 1.37290 1.12646 1.36461 0.85439 0.77936 0.78771 0.78867 1.19417 1.20160 1.19411 1.21945 0.90282 1.01868 1.01109 0.93653 0.90591 0.92284 0.87235 0.92981 0.88504 0.88530 0.91281 0.89614 0.93295 0.90903 0.88333 0.90464 0.93322 0.89598 0.92141 0.76090 0.94203 0.95333 0.97029 0.97934 0.92450 0.89324 0.92972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.19 71.98 0.66 -0.96 16 2 C -0.08 -1.10 2.68 -10.77 -0.03 -1.13 16 3 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 4 C -0.13 -1.54 5.36 30.67 0.16 -1.38 16 5 C 0.11 1.68 6.45 86.36 0.56 2.24 16 6 N -0.59 -14.98 2.97 -929.40 -2.76 -17.74 16 7 C 0.63 20.65 7.42 129.79 0.96 21.61 16 8 O -0.56 -23.15 7.64 27.64 0.21 -22.93 16 9 O -0.36 -9.80 8.54 -55.44 -0.47 -10.27 16 10 C 0.13 3.19 1.13 -10.80 -0.01 3.18 16 11 C -0.18 -4.68 8.37 71.98 0.60 -4.08 16 12 C -0.13 -1.98 8.85 71.98 0.64 -1.34 16 13 C -0.18 -5.00 8.37 71.98 0.60 -4.39 16 14 C 0.15 3.88 3.31 44.23 0.15 4.03 16 15 H 0.12 2.39 7.92 -2.38 -0.02 2.37 16 16 C 0.53 20.04 4.37 87.66 0.38 20.43 16 17 O -0.57 -27.08 14.60 20.56 0.30 -26.78 16 18 N -0.72 -28.60 5.56 -463.05 -2.57 -31.17 16 19 C 0.16 7.65 5.61 86.38 0.48 8.13 16 20 C 0.03 1.51 5.09 29.85 0.15 1.66 16 21 C -0.55 -32.61 9.11 25.60 0.23 -32.37 16 22 H 0.05 3.15 7.74 -2.91 -0.02 3.13 16 23 C 0.01 0.49 5.46 84.65 0.46 0.95 16 24 N -0.93 -55.93 13.29 21.45 0.28 -55.65 16 25 Si 0.97 45.37 29.54 68.60 2.03 47.40 16 26 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 27 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 28 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 29 C -0.11 -2.41 4.60 30.67 0.14 -2.27 16 30 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.10 1.03 8.14 -2.38 -0.02 1.01 16 36 H 0.10 1.45 6.93 -2.39 -0.02 1.43 16 37 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.05 1.73 5.88 -2.39 -0.01 1.72 16 40 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.05 1.86 5.88 -2.39 -0.01 1.85 16 44 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 45 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 46 H 0.40 13.83 8.31 -92.71 -0.77 13.06 16 47 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 48 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 49 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 50 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 51 H 0.27 15.05 8.31 -92.70 -0.77 14.28 16 52 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 53 H 0.05 1.42 7.93 -2.39 -0.02 1.40 16 Total: -1.00 -80.41 412.45 3.27 -77.14 By element: Atomic # 1 Polarization: 25.60 SS G_CDS: 0.11 Total: 25.71 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: 6.15 Total: 14.31 kcal Atomic # 7 Polarization: -99.51 SS G_CDS: -5.05 Total: -104.56 kcal Atomic # 8 Polarization: -60.03 SS G_CDS: 0.04 Total: -59.99 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -80.41 3.27 -77.14 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495575750.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.164 kcal (2) G-P(sol) polarization free energy of solvation -80.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds