Wall clock time and date at job start Tue Mar 31 2020 23:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.45607 * 2 1 4 4 C 1.53046 * 109.46045 * 240.04501 * 2 1 3 5 5 C 1.53198 * 109.30825 * 178.61328 * 4 2 1 6 6 H 1.09000 * 109.58180 * 174.56469 * 5 4 2 7 7 C 1.53001 * 109.58716 * 294.84314 * 5 4 2 8 8 N 1.46917 * 108.77691 * 54.63266 * 5 4 2 9 9 C 1.34783 * 120.62821 * 126.41014 * 8 5 4 10 10 O 1.21680 * 119.99998 * 354.75125 * 9 8 5 11 11 C 1.46378 * 119.99773 * 174.75182 * 9 8 5 12 12 H 1.08007 * 119.99964 * 348.70494 * 11 9 8 13 13 C 1.40053 * 119.99997 * 168.70792 * 11 9 8 14 14 N 1.30673 * 119.99842 * 170.78383 * 13 11 9 15 15 Si 1.86800 * 119.99765 * 350.78881 * 13 11 9 16 16 H 1.48501 * 109.47099 * 84.69742 * 15 13 11 17 17 H 1.48502 * 109.46915 * 204.69682 * 15 13 11 18 18 H 1.48496 * 109.47363 * 324.69958 * 15 13 11 19 19 C 1.46930 * 118.76777 * 306.40965 * 8 5 4 20 20 C 1.53033 * 109.46131 * 119.97433 * 2 1 3 21 21 H 1.08997 * 109.50085 * 61.40463 * 20 2 1 22 22 C 1.53004 * 109.49956 * 301.33735 * 20 2 1 23 23 N 1.46495 * 109.47518 * 175.06455 * 22 20 2 24 24 C 1.34776 * 120.00116 * 180.02562 * 23 22 20 25 25 O 1.21506 * 119.99789 * 0.02562 * 24 23 22 26 26 O 1.34640 * 119.99813 * 179.97438 * 24 23 22 27 27 C 1.45199 * 116.99511 * 179.97438 * 26 24 23 28 28 C 1.52997 * 109.46932 * 60.00904 * 27 26 24 29 29 C 1.52996 * 109.47525 * 300.00464 * 27 26 24 30 30 C 1.53007 * 109.46835 * 180.02562 * 27 26 24 31 31 H 1.08998 * 109.47387 * 300.02392 * 1 2 3 32 32 H 1.09005 * 109.47096 * 60.03113 * 1 2 3 33 33 H 1.09008 * 109.46879 * 180.02562 * 1 2 3 34 34 H 1.08995 * 109.49774 * 298.56072 * 4 2 1 35 35 H 1.08995 * 109.49787 * 58.63081 * 4 2 1 36 36 H 1.09003 * 109.47153 * 60.00127 * 7 5 4 37 37 H 1.09002 * 109.47277 * 180.02562 * 7 5 4 38 38 H 1.09001 * 109.47214 * 300.00709 * 7 5 4 39 39 H 0.97001 * 119.99463 * 179.97438 * 14 13 11 40 40 H 1.08997 * 109.56413 * 293.78710 * 19 8 5 41 41 H 1.09005 * 109.61734 * 173.35847 * 19 8 5 42 42 H 1.09001 * 109.46674 * 55.06232 * 22 20 2 43 43 H 1.09000 * 109.46782 * 295.06830 * 22 20 2 44 44 H 0.97005 * 120.00045 * 0.02562 * 23 22 20 45 45 H 1.09001 * 109.47074 * 299.99286 * 28 27 26 46 46 H 1.09001 * 109.47682 * 59.99993 * 28 27 26 47 47 H 1.09007 * 109.47138 * 179.97438 * 28 27 26 48 48 H 1.09003 * 109.47131 * 180.02562 * 29 27 26 49 49 H 1.09006 * 109.47089 * 299.99964 * 29 27 26 50 50 H 1.09001 * 109.47169 * 60.00293 * 29 27 26 51 51 H 1.09002 * 109.46738 * 299.99874 * 30 27 26 52 52 H 1.08995 * 109.47120 * 59.99910 * 30 27 26 53 53 H 1.08999 * 109.47049 * 180.02562 * 30 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7205 -1.2503 5 6 3.5714 -0.6883 -1.2643 6 1 3.9417 -1.2820 -2.1001 7 6 4.0527 0.7569 -1.4089 8 7 4.0679 -1.2486 -0.0002 9 6 4.9621 -2.2570 -0.0004 10 8 5.2938 -2.7759 -1.0498 11 6 5.5343 -2.7280 1.2620 12 1 5.3861 -2.1587 2.1677 13 6 6.2739 -3.9169 1.2952 14 7 6.9341 -4.2456 2.3739 15 14 6.3166 -5.0324 -0.2026 16 1 7.3692 -4.5633 -1.1393 17 1 6.6175 -6.4226 0.2241 18 1 4.9973 -4.9980 -0.8832 19 6 3.5714 -0.6893 1.2645 20 6 2.0398 -0.7209 1.2499 21 1 1.6974 -1.7556 1.2383 22 6 1.5027 -0.0192 2.4990 23 7 1.8930 -0.7767 3.6906 24 6 1.5275 -0.3443 4.9137 25 8 0.8740 0.6736 5.0279 26 8 1.8858 -1.0409 6.0088 27 6 1.4578 -0.5158 7.2931 28 6 -0.0700 -0.4460 7.3320 29 6 2.0376 0.8863 7.4897 30 6 1.9555 -1.4344 8.4110 31 1 -0.3634 0.5142 0.8897 32 1 -0.3633 0.5134 -0.8903 33 1 -0.3633 -1.0278 0.0005 34 1 1.6979 -1.7554 -1.2386 35 1 1.6568 -0.2207 -2.1399 36 1 3.6856 1.3478 -0.5697 37 1 5.1425 0.7776 -1.4191 38 1 3.6728 1.1748 -2.3411 39 1 7.4461 -5.0692 2.3970 40 1 3.9147 0.3400 1.3681 41 1 3.9412 -1.2857 2.0986 42 1 0.4156 0.0377 2.4445 43 1 1.9169 0.9874 2.5566 44 1 2.4144 -1.5896 3.5994 45 1 -0.4242 0.2086 6.5356 46 1 -0.4831 -1.4450 7.1920 47 1 -0.3914 -0.0523 8.2963 48 1 1.7167 1.2803 8.4541 49 1 3.1262 0.8366 7.4621 50 1 1.6834 1.5409 6.6934 51 1 1.5426 -2.4334 8.2711 52 1 3.0439 -1.4838 8.3831 53 1 1.6338 -1.0405 9.3751 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496046034.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:35 Heat of formation + Delta-G solvation = -165.687114 kcal Electronic energy + Delta-G solvation = -31889.304747 eV Core-core repulsion = 27759.157756 eV Total energy + Delta-G solvation = -4130.146991 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.81037 -41.07627 -39.02192 -38.14903 -36.16128 -35.10671 -34.94029 -34.51823 -33.14982 -30.13451 -28.50519 -28.31471 -28.26499 -27.78853 -26.78556 -23.94366 -23.26714 -22.49374 -21.78328 -20.85688 -19.78320 -19.08749 -18.72693 -17.96061 -17.64593 -17.23468 -16.90147 -16.31778 -16.03359 -15.85380 -15.63301 -15.35967 -15.17538 -14.84024 -14.72085 -14.53117 -14.30137 -14.16199 -14.04007 -13.88971 -13.46829 -13.31833 -13.28584 -13.09075 -12.93619 -12.86022 -12.82622 -12.74355 -12.64983 -12.46302 -12.38803 -12.33110 -12.25199 -12.00243 -11.86506 -11.49613 -11.33887 -11.23080 -11.19115 -11.04191 -11.00751 -10.14475 -9.93099 -9.24298 -8.78763 -6.99410 1.25730 1.31563 1.36513 1.60229 1.80633 2.10214 2.33139 2.66335 3.20495 3.30953 3.64321 3.79319 3.81312 3.83007 3.84910 3.99154 4.03122 4.15992 4.33712 4.45167 4.53304 4.55708 4.60182 4.65614 4.66601 4.67666 4.78483 4.80222 4.80470 4.87936 4.88429 4.91063 4.95193 4.98889 5.00603 5.03770 5.10218 5.15062 5.17953 5.26128 5.30099 5.32479 5.37443 5.41497 5.49176 5.60955 5.62437 5.70148 6.04001 6.28370 6.40779 6.64314 7.17529 7.36525 8.01753 8.26443 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009669 B = 0.003774 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2895.255261 B = 7416.853882 C = 9647.583578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.075 4.075 3 H 0.090 0.910 4 C -0.111 4.111 5 C 0.129 3.871 6 H 0.060 0.940 7 C -0.149 4.149 8 N -0.623 5.623 9 C 0.549 3.451 10 O -0.648 6.648 11 C -0.548 4.548 12 H 0.085 0.915 13 C 0.073 3.927 14 N -0.847 5.847 15 Si 1.009 2.991 16 H -0.296 1.296 17 H -0.302 1.302 18 H -0.287 1.287 19 C 0.124 3.876 20 C -0.099 4.099 21 H 0.071 0.929 22 C 0.152 3.848 23 N -0.708 5.708 24 C 0.647 3.353 25 O -0.589 6.589 26 O -0.376 6.376 27 C 0.122 3.878 28 C -0.177 4.177 29 C -0.179 4.179 30 C -0.139 4.139 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.050 0.950 34 H 0.047 0.953 35 H 0.097 0.903 36 H 0.071 0.929 37 H 0.032 0.968 38 H 0.085 0.915 39 H 0.291 0.709 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.087 0.913 43 H 0.074 0.926 44 H 0.410 0.590 45 H 0.066 0.934 46 H 0.059 0.941 47 H 0.093 0.907 48 H 0.093 0.907 49 H 0.055 0.945 50 H 0.065 0.935 51 H 0.066 0.934 52 H 0.062 0.938 53 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.513 10.620 7.028 20.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.094 4.094 3 H 0.108 0.892 4 C -0.149 4.149 5 C 0.026 3.974 6 H 0.079 0.921 7 C -0.207 4.207 8 N -0.354 5.354 9 C 0.357 3.643 10 O -0.543 6.543 11 C -0.584 4.584 12 H 0.103 0.897 13 C -0.143 4.143 14 N -0.477 5.477 15 Si 0.843 3.157 16 H -0.223 1.223 17 H -0.232 1.232 18 H -0.214 1.214 19 C 0.000 4.000 20 C -0.119 4.119 21 H 0.090 0.910 22 C 0.029 3.971 23 N -0.367 5.367 24 C 0.401 3.599 25 O -0.481 6.481 26 O -0.291 6.291 27 C 0.086 3.914 28 C -0.234 4.234 29 C -0.236 4.236 30 C -0.195 4.195 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.115 0.885 36 H 0.090 0.910 37 H 0.051 0.949 38 H 0.104 0.896 39 H 0.101 0.899 40 H 0.081 0.919 41 H 0.094 0.906 42 H 0.105 0.895 43 H 0.092 0.908 44 H 0.246 0.754 45 H 0.084 0.916 46 H 0.078 0.922 47 H 0.111 0.889 48 H 0.112 0.888 49 H 0.074 0.926 50 H 0.084 0.916 51 H 0.085 0.915 52 H 0.081 0.919 53 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -15.569 10.801 6.807 20.134 hybrid contribution 0.910 -1.120 -0.546 1.543 sum -14.658 9.680 6.262 18.649 Atomic orbital electron populations 1.21888 0.93349 1.02064 1.02911 1.21050 0.96694 0.99690 0.91923 0.89155 1.21894 0.93096 1.00618 0.99301 1.21108 0.94740 0.94803 0.86787 0.92124 1.22071 1.00184 0.95232 1.03257 1.47644 1.44625 1.36683 1.06447 1.18272 0.78186 0.78764 0.89094 1.90151 1.67577 1.60596 1.35984 1.20983 1.33154 1.09394 0.94912 0.89707 1.26182 0.90824 0.98597 0.98706 1.69568 1.24090 1.24352 1.29717 0.84620 0.78759 0.74414 0.77918 1.22349 1.23201 1.21354 1.21631 0.93213 0.98495 0.86628 1.21743 0.94768 1.00631 0.94715 0.91023 1.21463 1.00697 0.94602 0.80296 1.44958 1.58120 1.30438 1.03177 1.18189 0.78351 0.81508 0.81867 1.90854 1.44232 1.26450 1.86530 1.86362 1.73672 1.53592 1.15490 1.22428 0.95430 0.94958 0.78587 1.22454 0.93476 1.02885 1.04564 1.22472 1.01027 0.95814 1.04310 1.21904 1.02195 0.99300 0.96151 0.91478 0.91008 0.93134 0.93401 0.88486 0.91022 0.94909 0.89577 0.89920 0.91887 0.90648 0.89490 0.90767 0.75425 0.91556 0.92175 0.88866 0.88796 0.92582 0.91574 0.91459 0.91865 0.87562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 8.81 71.98 0.63 -1.74 16 2 C -0.07 -1.55 2.02 -10.77 -0.02 -1.57 16 3 H 0.09 1.67 6.51 -2.39 -0.02 1.66 16 4 C -0.11 -2.78 4.84 30.68 0.15 -2.63 16 5 C 0.13 4.32 3.21 44.98 0.14 4.46 16 6 H 0.06 2.43 7.00 -2.39 -0.02 2.41 16 7 C -0.15 -4.02 9.02 71.98 0.65 -3.37 16 8 N -0.62 -25.27 2.68 -800.05 -2.14 -27.41 16 9 C 0.55 28.83 7.35 86.36 0.63 29.47 16 10 O -0.65 -37.68 11.68 -4.29 -0.05 -37.73 16 11 C -0.55 -30.45 9.22 24.83 0.23 -30.22 16 12 H 0.09 4.68 6.20 -2.91 -0.02 4.66 16 13 C 0.07 4.12 5.52 85.31 0.47 4.59 16 14 N -0.85 -47.48 13.92 21.84 0.30 -47.18 16 15 Si 1.01 52.96 25.86 68.60 1.77 54.73 16 16 H -0.30 -16.18 7.11 99.48 0.71 -15.48 16 17 H -0.30 -14.51 7.11 99.48 0.71 -13.81 16 18 H -0.29 -15.95 6.61 99.48 0.66 -15.29 16 19 C 0.12 4.08 4.96 86.36 0.43 4.51 16 20 C -0.10 -2.49 1.92 -10.72 -0.02 -2.51 16 21 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 22 C 0.15 3.48 4.82 86.38 0.42 3.90 16 23 N -0.71 -18.86 5.33 -590.85 -3.15 -22.01 16 24 C 0.65 18.84 8.06 129.79 1.05 19.88 16 25 O -0.59 -18.31 11.88 19.82 0.24 -18.08 16 26 O -0.38 -10.61 9.94 -55.50 -0.55 -11.16 16 27 C 0.12 2.67 1.13 -10.79 -0.01 2.66 16 28 C -0.18 -3.50 8.37 71.98 0.60 -2.90 16 29 C -0.18 -3.77 8.37 71.98 0.60 -3.17 16 30 C -0.14 -2.31 8.85 71.98 0.64 -1.67 16 31 H 0.07 1.01 6.30 -2.39 -0.02 0.99 16 32 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 33 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 34 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.07 1.68 5.72 -2.39 -0.01 1.67 16 37 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.29 14.97 8.29 -92.71 -0.77 14.20 16 40 H 0.06 1.92 7.48 -2.39 -0.02 1.90 16 41 H 0.08 2.84 4.71 -2.38 -0.01 2.83 16 42 H 0.09 1.83 6.14 -2.39 -0.01 1.81 16 43 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.41 11.35 7.81 -92.70 -0.72 10.62 16 45 H 0.07 1.63 5.88 -2.39 -0.01 1.61 16 46 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 47 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 48 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 49 H 0.06 1.21 8.14 -2.38 -0.02 1.20 16 50 H 0.07 1.70 5.88 -2.39 -0.01 1.69 16 51 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 52 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 53 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -70.89 398.65 3.14 -67.75 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: 0.14 Total: 21.40 kcal Atomic # 6 Polarization: 13.10 SS G_CDS: 6.59 Total: 19.69 kcal Atomic # 7 Polarization: -91.61 SS G_CDS: -4.99 Total: -96.60 kcal Atomic # 8 Polarization: -66.61 SS G_CDS: -0.37 Total: -66.97 kcal Atomic # 14 Polarization: 52.96 SS G_CDS: 1.77 Total: 54.73 kcal Total: -70.89 3.14 -67.75 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496046034.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.940 kcal (2) G-P(sol) polarization free energy of solvation -70.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds