Wall clock time and date at job start Tue Mar 31 2020 23:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 112.85203 * 2 1 4 4 C 1.53783 * 113.69072 * 228.72946 * 2 1 3 5 5 C 1.53774 * 87.08441 * 220.01246 * 4 2 1 6 6 C 1.53780 * 87.08295 * 25.42908 * 5 4 2 7 7 H 1.09007 * 113.68350 * 89.12897 * 6 5 4 8 8 N 1.46496 * 113.61905 * 220.01919 * 6 5 4 9 9 C 1.34776 * 120.00101 * 252.50369 * 8 6 5 10 10 O 1.21279 * 120.00265 * 359.97438 * 9 8 6 11 11 C 1.50705 * 120.00005 * 180.02562 * 9 8 6 12 12 H 1.09002 * 109.46640 * 299.99587 * 11 9 8 13 13 C 1.53000 * 109.47153 * 59.99392 * 11 9 8 14 14 C 1.53004 * 109.46988 * 184.99960 * 13 11 9 15 15 C 1.50699 * 109.46843 * 180.02562 * 14 13 11 16 16 H 1.08002 * 120.00516 * 359.97438 * 15 14 13 17 17 C 1.37884 * 119.99783 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99707 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 119.99956 * 180.27458 * 17 15 14 20 20 H 1.48497 * 109.47172 * 179.72730 * 19 17 15 21 21 H 1.48506 * 109.47132 * 299.72429 * 19 17 15 22 22 H 1.48501 * 109.47173 * 59.72550 * 19 17 15 23 23 N 1.46501 * 109.46995 * 179.97438 * 11 9 8 24 24 C 1.34773 * 120.00315 * 85.00036 * 23 11 9 25 25 O 1.21517 * 119.99450 * 359.97438 * 24 23 11 26 26 O 1.34638 * 120.00276 * 179.97438 * 24 23 11 27 27 C 1.45195 * 117.00027 * 179.97438 * 26 24 23 28 28 C 1.53006 * 109.47082 * 59.99867 * 27 26 24 29 29 C 1.52997 * 109.47196 * 179.97438 * 27 26 24 30 30 C 1.52995 * 109.47472 * 300.00372 * 27 26 24 31 31 H 1.09004 * 109.47257 * 288.80175 * 1 2 3 32 32 H 1.08993 * 109.47216 * 48.80085 * 1 2 3 33 33 H 1.09001 * 109.47095 * 168.80424 * 1 2 3 34 34 H 1.09006 * 113.61211 * 334.55936 * 4 2 1 35 35 H 1.08999 * 113.61408 * 105.45513 * 4 2 1 36 36 H 1.09006 * 113.60968 * 270.88654 * 5 4 2 37 37 H 1.08998 * 113.61778 * 139.98382 * 5 4 2 38 38 H 0.96993 * 119.99886 * 72.49803 * 8 6 5 39 39 H 1.09006 * 109.46826 * 65.00308 * 13 11 9 40 40 H 1.08997 * 109.47123 * 305.00243 * 13 11 9 41 41 H 1.09001 * 109.46361 * 60.00532 * 14 13 11 42 42 H 1.08997 * 109.46991 * 300.00423 * 14 13 11 43 43 H 0.97005 * 119.99656 * 179.97438 * 18 17 15 44 44 H 0.97002 * 119.99651 * 264.99298 * 23 11 9 45 45 H 1.09008 * 109.46837 * 59.99939 * 28 27 26 46 46 H 1.08998 * 109.47013 * 179.97438 * 28 27 26 47 47 H 1.08998 * 109.47369 * 300.00408 * 28 27 26 48 48 H 1.09002 * 109.46848 * 60.00574 * 29 27 26 49 49 H 1.08998 * 109.47365 * 180.02562 * 29 27 26 50 50 H 1.08999 * 109.47581 * 300.00389 * 29 27 26 51 51 H 1.08998 * 109.47421 * 59.99728 * 30 27 26 52 52 H 1.08998 * 109.47373 * 180.02562 * 30 27 26 53 53 H 1.09002 * 109.46913 * 299.99635 * 30 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9533 1.0045 0.0000 4 6 2.1479 -0.9289 -1.0584 5 6 3.1936 -1.3121 0.0019 6 6 2.1460 -0.9281 1.0602 7 1 1.4945 -1.7523 1.3506 8 7 2.7074 -0.2145 2.2099 9 6 2.8152 -0.8353 3.4013 10 8 2.4470 -1.9845 3.5218 11 6 3.3922 -0.1010 4.5841 12 1 4.4116 0.2105 4.3563 13 6 2.5376 1.1318 4.8855 14 6 3.1917 1.9445 6.0048 15 6 2.3496 3.1584 6.3021 16 1 1.4392 3.3331 5.7479 17 6 2.7419 4.0467 7.2809 18 7 3.8513 3.8348 7.9547 19 14 1.6942 5.5473 7.6547 20 1 2.3265 6.3336 8.7442 21 1 1.5834 6.3895 6.4366 22 1 0.3398 5.1118 8.0804 23 7 3.4008 -0.9860 5.7515 24 6 4.4272 -1.8380 5.9438 25 8 5.3453 -1.8724 5.1485 26 8 4.4353 -2.6511 7.0169 27 6 5.5722 -3.5428 7.1597 28 6 6.8576 -2.7187 7.2585 29 6 5.4062 -4.3818 8.4283 30 6 5.6514 -4.4671 5.9431 31 1 -0.3634 0.3312 0.9729 32 1 -0.3633 0.6768 -0.7732 33 1 -0.3633 -1.0081 -0.1995 34 1 1.4974 -1.7541 -1.3483 35 1 2.5670 -0.3986 -1.9135 36 1 4.0717 -0.6662 0.0025 37 1 3.4466 -2.3722 0.0025 38 1 3.0017 0.7047 2.1136 39 1 1.5426 0.8162 5.1995 40 1 2.4578 1.7466 3.9890 41 1 4.1866 2.2601 5.6907 42 1 3.2715 1.3296 6.9012 43 1 4.1275 4.4599 8.6431 44 1 2.6677 -0.9587 6.3862 45 1 6.8012 -2.0601 8.1253 46 1 7.7110 -3.3882 7.3661 47 1 6.9761 -2.1206 6.3550 48 1 4.4905 -4.9690 8.3583 49 1 6.2598 -5.0510 8.5358 50 1 5.3500 -3.7231 9.2949 51 1 5.7700 -3.8691 5.0395 52 1 6.5046 -5.1369 6.0505 53 1 4.7358 -5.0543 5.8727 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496202999.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:26:08 Heat of formation + Delta-G solvation = -143.155877 kcal Electronic energy + Delta-G solvation = -31212.331381 eV Core-core repulsion = 27083.161418 eV Total energy + Delta-G solvation = -4129.169963 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.99949 -41.16863 -39.67660 -38.23099 -36.79079 -35.34185 -34.81544 -34.55305 -32.67127 -30.67302 -29.38259 -28.36073 -28.29164 -26.44106 -25.25383 -23.96844 -23.48640 -22.48259 -21.46681 -21.06744 -20.52019 -19.29522 -18.68609 -18.14309 -17.84269 -17.45600 -16.94261 -16.51567 -16.37151 -15.93272 -15.60955 -15.43825 -15.32395 -15.12344 -14.70426 -14.49814 -14.42842 -14.16154 -14.07497 -13.69107 -13.59227 -13.34130 -13.15036 -12.90530 -12.85972 -12.82463 -12.73187 -12.60455 -12.54337 -12.51918 -12.44966 -12.31474 -12.09200 -11.82431 -11.67748 -11.39334 -11.37212 -11.30152 -11.24510 -11.12224 -11.08263 -10.51255 -10.06835 -9.97067 -8.15633 -6.26302 1.12116 1.44547 1.46256 1.52512 1.54290 1.72166 2.27684 2.44596 3.16567 3.19156 3.50358 3.68435 3.68995 3.76308 3.80686 3.88379 3.91626 3.95307 3.98442 4.07865 4.49975 4.54005 4.57179 4.58585 4.61192 4.70575 4.75386 4.75964 4.82047 4.83758 4.86271 4.87471 4.95224 4.99113 5.04412 5.09183 5.10475 5.19214 5.21925 5.29342 5.30790 5.36858 5.41544 5.53715 5.55232 5.66656 5.70503 5.86788 6.23871 6.35938 6.49201 6.90728 7.17246 7.33003 7.43207 8.95436 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.005253 B = 0.004817 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 5329.407963 B = 5811.617152 C =10561.688326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.110 4.110 3 H 0.106 0.894 4 C -0.121 4.121 5 C -0.155 4.155 6 C 0.113 3.887 7 H 0.092 0.908 8 N -0.704 5.704 9 C 0.510 3.490 10 O -0.572 6.572 11 C 0.154 3.846 12 H 0.106 0.894 13 C -0.095 4.095 14 C 0.031 3.969 15 C -0.538 4.538 16 H 0.067 0.933 17 C 0.003 3.997 18 N -0.932 5.932 19 Si 0.959 3.041 20 H -0.290 1.290 21 H -0.265 1.265 22 H -0.269 1.269 23 N -0.681 5.681 24 C 0.655 3.345 25 O -0.592 6.592 26 O -0.372 6.372 27 C 0.121 3.879 28 C -0.180 4.180 29 C -0.134 4.134 30 C -0.175 4.175 31 H 0.047 0.953 32 H 0.071 0.929 33 H 0.057 0.943 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.059 0.941 38 H 0.414 0.586 39 H 0.069 0.931 40 H 0.097 0.903 41 H -0.006 1.006 42 H -0.002 1.002 43 H 0.261 0.739 44 H 0.413 0.587 45 H 0.055 0.945 46 H 0.098 0.902 47 H 0.058 0.942 48 H 0.069 0.931 49 H 0.108 0.892 50 H 0.066 0.934 51 H 0.056 0.944 52 H 0.097 0.903 53 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.742 -12.571 -12.134 17.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.129 4.129 3 H 0.125 0.875 4 C -0.159 4.159 5 C -0.194 4.194 6 C 0.008 3.992 7 H 0.110 0.890 8 N -0.356 5.356 9 C 0.296 3.704 10 O -0.451 6.451 11 C 0.046 3.954 12 H 0.123 0.877 13 C -0.133 4.133 14 C -0.006 4.006 15 C -0.576 4.576 16 H 0.085 0.915 17 C -0.195 4.195 18 N -0.572 5.572 19 Si 0.784 3.216 20 H -0.215 1.215 21 H -0.190 1.190 22 H -0.194 1.194 23 N -0.339 5.339 24 C 0.409 3.591 25 O -0.484 6.484 26 O -0.287 6.287 27 C 0.085 3.915 28 C -0.237 4.237 29 C -0.191 4.191 30 C -0.232 4.232 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.078 0.922 38 H 0.251 0.749 39 H 0.087 0.913 40 H 0.115 0.885 41 H 0.012 0.988 42 H 0.016 0.984 43 H 0.070 0.930 44 H 0.249 0.751 45 H 0.075 0.925 46 H 0.116 0.884 47 H 0.077 0.923 48 H 0.088 0.912 49 H 0.127 0.873 50 H 0.085 0.915 51 H 0.075 0.925 52 H 0.116 0.884 53 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.413 -13.403 -12.248 18.161 hybrid contribution -0.302 1.234 0.847 1.527 sum -0.715 -12.169 -11.401 16.690 Atomic orbital electron populations 1.21731 0.94030 1.02309 1.01950 1.22970 0.96463 0.99189 0.94268 0.87541 1.22780 0.97300 0.99390 0.96429 1.23405 0.98177 1.01649 0.96190 1.22848 0.96401 0.96439 0.83475 0.89011 1.45919 1.63455 1.17325 1.08870 1.21208 0.77431 0.86696 0.85090 1.90632 1.50518 1.18923 1.85039 1.20972 1.02446 0.89185 0.82841 0.87672 1.21771 0.97904 0.92204 1.01416 1.18943 0.94826 0.93814 0.93048 1.21617 1.08781 1.08038 1.19180 0.91493 1.25897 0.96229 1.01349 0.96022 1.70102 1.24445 1.38262 1.24382 0.85588 0.78868 0.79153 0.77953 1.21543 1.18959 1.19368 1.44294 1.23339 1.38925 1.27324 1.18099 0.82315 0.78618 0.80087 1.90828 1.37526 1.72167 1.47835 1.86307 1.49002 1.49711 1.43662 1.22485 0.82873 0.88010 0.98152 1.22479 0.97240 1.01245 1.02728 1.21883 1.04429 0.99102 0.93670 1.22424 1.03331 0.99544 0.97880 0.93368 0.90977 0.92411 0.89275 0.89205 0.89331 0.92189 0.74901 0.91261 0.88475 0.98777 0.98359 0.93003 0.75062 0.92546 0.88374 0.92269 0.91207 0.87317 0.91510 0.92506 0.88444 0.92396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.71 71.98 0.70 -1.51 16 2 C -0.11 -1.75 4.11 -10.27 -0.04 -1.79 16 3 H 0.11 1.49 8.12 -2.39 -0.02 1.47 16 4 C -0.12 -1.69 7.64 31.12 0.24 -1.46 16 5 C -0.16 -2.98 7.88 31.12 0.25 -2.74 16 6 C 0.11 2.53 3.80 45.52 0.17 2.70 16 7 H 0.09 2.46 7.42 -2.38 -0.02 2.45 16 8 N -0.70 -17.90 5.22 -440.03 -2.30 -20.20 16 9 C 0.51 17.11 7.19 87.66 0.63 17.74 16 10 O -0.57 -23.00 15.92 -3.03 -0.05 -23.05 16 11 C 0.15 5.40 2.38 44.25 0.11 5.51 16 12 H 0.11 3.89 7.58 -2.39 -0.02 3.87 16 13 C -0.09 -3.41 4.64 30.60 0.14 -3.27 16 14 C 0.03 1.49 4.86 29.85 0.15 1.63 16 15 C -0.54 -28.31 9.11 25.60 0.23 -28.08 16 16 H 0.07 3.30 7.74 -2.91 -0.02 3.28 16 17 C 0.00 0.17 5.46 84.66 0.46 0.63 16 18 N -0.93 -55.07 13.29 21.45 0.28 -54.79 16 19 Si 0.96 42.45 29.54 68.60 2.03 44.48 16 20 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 21 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 22 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 23 N -0.68 -25.55 4.06 -573.71 -2.33 -27.88 16 24 C 0.66 25.72 7.89 129.79 1.02 26.74 16 25 O -0.59 -24.80 11.54 19.79 0.23 -24.57 16 26 O -0.37 -13.16 9.94 -55.47 -0.55 -13.71 16 27 C 0.12 3.37 1.13 -10.79 -0.01 3.36 16 28 C -0.18 -4.98 8.37 71.98 0.60 -4.38 16 29 C -0.13 -2.67 8.85 71.98 0.64 -2.03 16 30 C -0.17 -4.67 8.37 71.98 0.60 -4.06 16 31 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 32 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.06 0.87 7.95 -2.39 -0.02 0.85 16 34 H 0.09 1.15 7.97 -2.38 -0.02 1.14 16 35 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 37 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.41 8.64 8.09 -92.71 -0.75 7.89 16 39 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 40 H 0.10 3.03 7.43 -2.39 -0.02 3.01 16 41 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 42 H 0.00 -0.11 7.75 -2.39 -0.02 -0.12 16 43 H 0.26 14.71 8.31 -92.70 -0.77 13.94 16 44 H 0.41 14.75 8.71 -92.71 -0.81 13.94 16 45 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 46 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 47 H 0.06 2.01 5.88 -2.39 -0.01 2.00 16 48 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 49 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 50 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 51 H 0.06 1.90 5.88 -2.39 -0.01 1.89 16 52 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 53 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -72.18 425.02 2.54 -69.64 By element: Atomic # 1 Polarization: 41.74 SS G_CDS: -0.66 Total: 41.08 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: 5.88 Total: 9.00 kcal Atomic # 7 Polarization: -98.53 SS G_CDS: -4.34 Total: -102.87 kcal Atomic # 8 Polarization: -60.96 SS G_CDS: -0.37 Total: -61.33 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -72.18 2.54 -69.64 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496202999.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.513 kcal (2) G-P(sol) polarization free energy of solvation -72.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds