Wall clock time and date at job start Wed Apr 1 2020 01:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09006 * 109.46869 * 2 1 4 4 N 1.46500 * 109.47296 * 119.99528 * 2 1 3 5 5 C 1.34776 * 120.00278 * 275.00053 * 4 2 1 6 6 O 1.21278 * 119.99655 * 0.02562 * 5 4 2 7 7 C 1.50697 * 119.99784 * 179.97438 * 5 4 2 8 8 H 1.09005 * 109.47284 * 300.00061 * 7 5 4 9 9 C 1.52999 * 109.47220 * 60.00502 * 7 5 4 10 10 C 1.53005 * 109.47150 * 184.99927 * 9 7 5 11 11 C 1.50698 * 109.46971 * 180.02562 * 10 9 7 12 12 H 1.08002 * 120.00134 * 359.97438 * 11 10 9 13 13 C 1.37880 * 119.99813 * 180.02562 * 11 10 9 14 14 N 1.31511 * 119.99929 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99998 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47214 * 59.99058 * 15 13 11 17 17 H 1.48495 * 109.47255 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46908 * 299.99395 * 15 13 11 19 19 N 1.46506 * 109.47063 * 180.02562 * 7 5 4 20 20 C 1.34773 * 119.99969 * 84.72117 * 19 7 5 21 21 O 1.21514 * 120.00185 * 0.02562 * 20 19 7 22 22 O 1.34634 * 120.00021 * 180.02562 * 20 19 7 23 23 C 1.45198 * 117.00454 * 180.02562 * 22 20 19 24 24 C 1.53002 * 109.47118 * 59.99679 * 23 22 20 25 25 C 1.53002 * 109.47695 * 179.97438 * 23 22 20 26 26 C 1.52998 * 109.46801 * 299.99999 * 23 22 20 27 27 C 1.53002 * 109.47224 * 240.00232 * 2 1 3 28 28 C 1.53000 * 117.50020 * 128.62080 * 27 2 1 29 29 C 1.52996 * 117.50016 * 59.99837 * 27 2 1 30 30 H 1.08996 * 109.47239 * 60.00156 * 1 2 3 31 31 H 1.09006 * 109.46869 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47287 * 299.99951 * 1 2 3 33 33 H 0.97008 * 119.99618 * 95.00166 * 4 2 1 34 34 H 1.08996 * 109.47238 * 304.99475 * 9 7 5 35 35 H 1.09004 * 109.47119 * 65.00015 * 9 7 5 36 36 H 1.09006 * 109.46641 * 299.99859 * 10 9 7 37 37 H 1.09000 * 109.47259 * 59.99588 * 10 9 7 38 38 H 0.97001 * 120.00065 * 180.02562 * 14 13 11 39 39 H 0.97005 * 119.99811 * 265.00170 * 19 7 5 40 40 H 1.09003 * 109.47056 * 60.00497 * 24 23 22 41 41 H 1.08999 * 109.46878 * 180.02562 * 24 23 22 42 42 H 1.08997 * 109.46990 * 300.00536 * 24 23 22 43 43 H 1.08997 * 109.46800 * 59.99380 * 25 23 22 44 44 H 1.08999 * 109.47432 * 180.02562 * 25 23 22 45 45 H 1.09001 * 109.46524 * 299.99893 * 25 23 22 46 46 H 1.08998 * 109.47435 * 60.00025 * 26 23 22 47 47 H 1.09008 * 109.47422 * 179.97438 * 26 23 22 48 48 H 1.09000 * 109.47606 * 299.99887 * 26 23 22 49 49 H 1.09007 * 115.54707 * 274.32245 * 27 2 1 50 50 H 1.09007 * 117.49993 * 359.97438 * 28 27 2 51 51 H 1.09004 * 117.49794 * 145.01739 * 28 27 2 52 52 H 1.09002 * 117.49580 * 214.97813 * 29 27 2 53 53 H 1.09002 * 117.50017 * 359.97438 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1471 -0.0181 2.3571 6 8 1.8582 1.1585 2.4116 7 6 2.6489 -0.7286 3.5877 8 1 1.9760 -1.5505 3.8326 9 6 4.0513 -1.2796 3.3222 10 6 4.5106 -2.1064 4.5249 11 6 5.8922 -2.6485 4.2637 12 1 6.3925 -2.4260 3.3328 13 6 6.5171 -3.4296 5.2127 14 7 5.9076 -3.7010 6.3460 15 14 8.2294 -4.1021 4.8886 16 1 9.1718 -2.9746 4.6745 17 1 8.6752 -4.9045 6.0559 18 1 8.2026 -4.9615 3.6778 19 7 2.6977 0.2126 4.7093 20 6 1.5919 0.4430 5.4444 21 8 0.5543 -0.1304 5.1772 22 8 1.6366 1.3084 6.4748 23 6 0.4081 1.5069 7.2228 24 6 -0.0438 0.1746 7.8242 25 6 0.6524 2.5163 8.3464 26 6 -0.6788 2.0385 6.2864 27 6 2.0400 -0.7212 -1.2493 28 6 3.0741 0.0052 -2.1117 29 6 1.6357 -0.1495 -2.6096 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 2.2490 -1.6317 1.1527 34 1 4.0317 -1.9106 2.4338 35 1 4.7431 -0.4520 3.1649 36 1 4.5303 -1.4753 5.4135 37 1 3.8189 -2.9340 4.6823 38 1 6.3474 -4.2501 7.0138 39 1 3.5250 0.6731 4.9203 40 1 0.7306 -0.2042 8.4914 41 1 -0.9663 0.3236 8.3854 42 1 -0.2178 -0.5448 7.0241 43 1 0.9746 3.4655 7.9183 44 1 -0.2697 2.6650 8.9082 45 1 1.4266 2.1371 9.0134 46 1 -0.8529 1.3191 5.4863 47 1 -1.6013 2.1872 6.8478 48 1 -0.3570 2.9877 5.8579 49 1 2.1268 -1.8045 -1.1642 50 1 3.3908 0.9972 -1.7893 51 1 3.8416 -0.6001 -2.5942 52 1 1.4569 -0.8566 -3.4196 53 1 1.0060 0.7402 -2.6146 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496230017.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:06:36 Heat of formation + Delta-G solvation = -135.258448 kcal Electronic energy + Delta-G solvation = -31180.742947 eV Core-core repulsion = 27051.915442 eV Total energy + Delta-G solvation = -4128.827505 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.98656 -41.00547 -39.01644 -38.15551 -36.79173 -35.48032 -35.22599 -34.79538 -32.82243 -31.32494 -29.01793 -28.35735 -28.28899 -26.13954 -25.08608 -23.57037 -23.13091 -22.48484 -21.51231 -21.15282 -21.01642 -19.29100 -18.74674 -18.14593 -17.85662 -17.49392 -16.96126 -16.51633 -16.47833 -15.90049 -15.62860 -15.51072 -15.28344 -15.19507 -14.90925 -14.61870 -14.44359 -14.24226 -14.07919 -13.64735 -13.33999 -13.32016 -13.14438 -13.00789 -12.90061 -12.85605 -12.81498 -12.59431 -12.53767 -12.46511 -12.31163 -12.29075 -11.84878 -11.81930 -11.74296 -11.39751 -11.36865 -11.28514 -11.11872 -11.09561 -11.03852 -10.50975 -10.10347 -10.05794 -8.15347 -6.25969 1.12103 1.44693 1.46344 1.53417 1.55029 1.71649 2.20162 2.44664 2.92145 3.16898 3.19440 3.62656 3.68718 3.76547 3.81023 3.89505 3.95631 4.00783 4.08302 4.13350 4.20666 4.41371 4.49117 4.50727 4.59172 4.61405 4.71706 4.75357 4.76240 4.82023 4.83712 4.84031 4.87783 4.95341 5.04571 5.05062 5.10784 5.18602 5.20293 5.26893 5.29569 5.29675 5.37181 5.53798 5.55286 5.56116 5.70778 5.87202 6.24307 6.36417 6.47973 6.91080 7.17007 7.33488 7.43516 8.95729 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.005154 B = 0.004881 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 5430.894022 B = 5735.195802 C =10652.161735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.174 3.826 3 H 0.066 0.934 4 N -0.709 5.709 5 C 0.512 3.488 6 O -0.570 6.570 7 C 0.154 3.846 8 H 0.106 0.894 9 C -0.095 4.095 10 C 0.031 3.969 11 C -0.538 4.538 12 H 0.067 0.933 13 C 0.003 3.997 14 N -0.932 5.932 15 Si 0.959 3.041 16 H -0.269 1.269 17 H -0.290 1.290 18 H -0.265 1.265 19 N -0.681 5.681 20 C 0.655 3.345 21 O -0.592 6.592 22 O -0.372 6.372 23 C 0.121 3.879 24 C -0.180 4.180 25 C -0.134 4.134 26 C -0.175 4.175 27 C -0.169 4.169 28 C -0.182 4.182 29 C -0.156 4.156 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.030 0.970 33 H 0.413 0.587 34 H 0.097 0.903 35 H 0.069 0.931 36 H -0.002 1.002 37 H -0.006 1.006 38 H 0.261 0.739 39 H 0.413 0.587 40 H 0.055 0.945 41 H 0.097 0.903 42 H 0.058 0.942 43 H 0.069 0.931 44 H 0.108 0.892 45 H 0.066 0.934 46 H 0.056 0.944 47 H 0.097 0.903 48 H 0.057 0.943 49 H 0.122 0.878 50 H 0.086 0.914 51 H 0.105 0.895 52 H 0.113 0.887 53 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.519 9.050 -9.709 17.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.069 3.931 3 H 0.084 0.916 4 N -0.361 5.361 5 C 0.297 3.703 6 O -0.449 6.449 7 C 0.046 3.954 8 H 0.123 0.877 9 C -0.133 4.133 10 C -0.006 4.006 11 C -0.576 4.576 12 H 0.085 0.915 13 C -0.195 4.195 14 N -0.572 5.572 15 Si 0.784 3.216 16 H -0.194 1.194 17 H -0.215 1.215 18 H -0.190 1.190 19 N -0.339 5.339 20 C 0.409 3.591 21 O -0.483 6.483 22 O -0.287 6.287 23 C 0.085 3.915 24 C -0.237 4.237 25 C -0.191 4.191 26 C -0.232 4.232 27 C -0.188 4.188 28 C -0.219 4.219 29 C -0.194 4.194 30 H 0.102 0.898 31 H 0.087 0.913 32 H 0.050 0.950 33 H 0.250 0.750 34 H 0.115 0.885 35 H 0.087 0.913 36 H 0.017 0.983 37 H 0.012 0.988 38 H 0.070 0.930 39 H 0.249 0.751 40 H 0.075 0.925 41 H 0.116 0.884 42 H 0.077 0.923 43 H 0.088 0.912 44 H 0.127 0.873 45 H 0.085 0.915 46 H 0.075 0.925 47 H 0.115 0.885 48 H 0.076 0.924 49 H 0.140 0.860 50 H 0.104 0.896 51 H 0.123 0.877 52 H 0.131 0.869 53 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -12.259 9.560 -9.576 18.259 hybrid contribution 1.288 -0.769 0.421 1.558 sum -10.971 8.791 -9.155 16.777 Atomic orbital electron populations 1.22084 0.94636 1.02726 1.01760 1.20485 0.94123 0.95786 0.82663 0.91599 1.45964 1.66717 1.14699 1.08770 1.21150 0.76618 0.87109 0.85437 1.90637 1.51370 1.17459 1.85427 1.20957 1.00868 0.90503 0.83037 0.87651 1.21769 0.90682 0.99859 1.00985 1.18944 0.94945 0.93791 0.92952 1.21616 1.02080 1.31055 1.02846 0.91509 1.25892 1.01940 0.96769 0.94886 1.70098 1.39734 1.39166 1.08197 0.85591 0.79763 0.78558 0.77669 1.19374 1.21541 1.18973 1.44295 1.11682 1.46839 1.31059 1.18094 0.83764 0.78257 0.78991 1.90828 1.30445 1.54224 1.72820 1.86306 1.41593 1.58962 1.41827 1.22483 0.80760 0.97135 0.91129 1.22477 1.02842 0.96742 1.01628 1.21884 1.04418 0.97265 0.95518 1.22424 0.99057 1.01206 1.00481 1.22416 1.05557 0.99979 0.90802 1.23102 0.93314 1.01817 1.03659 1.23027 0.97386 1.03378 0.95586 0.89822 0.91337 0.95038 0.74965 0.88481 0.91268 0.98339 0.98770 0.93003 0.75059 0.92543 0.88390 0.92262 0.91213 0.87328 0.91517 0.92493 0.88466 0.92398 0.86020 0.89557 0.87675 0.86874 0.88305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.30 9.32 71.98 0.67 -2.63 16 2 C 0.17 3.89 2.80 44.99 0.13 4.02 16 3 H 0.07 1.76 7.33 -2.38 -0.02 1.75 16 4 N -0.71 -18.07 4.94 -442.54 -2.19 -20.25 16 5 C 0.51 17.08 7.15 87.66 0.63 17.71 16 6 O -0.57 -22.71 15.98 -3.02 -0.05 -22.76 16 7 C 0.15 5.42 2.37 44.24 0.11 5.52 16 8 H 0.11 3.89 7.58 -2.38 -0.02 3.87 16 9 C -0.09 -3.42 4.64 30.60 0.14 -3.27 16 10 C 0.03 1.49 4.86 29.85 0.15 1.63 16 11 C -0.54 -28.33 9.11 25.60 0.23 -28.09 16 12 H 0.07 3.30 7.74 -2.91 -0.02 3.27 16 13 C 0.00 0.17 5.46 84.66 0.46 0.64 16 14 N -0.93 -55.09 13.29 21.45 0.28 -54.80 16 15 Si 0.96 42.49 29.54 68.60 2.03 44.51 16 16 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 17 H -0.29 -12.83 7.11 99.48 0.71 -12.13 16 18 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 19 N -0.68 -25.46 4.07 -573.72 -2.34 -27.80 16 20 C 0.66 25.62 7.87 129.79 1.02 26.64 16 21 O -0.59 -24.67 11.55 19.80 0.23 -24.45 16 22 O -0.37 -13.12 9.94 -55.44 -0.55 -13.67 16 23 C 0.12 3.36 1.13 -10.79 -0.01 3.35 16 24 C -0.18 -4.96 8.37 71.98 0.60 -4.36 16 25 C -0.13 -2.66 8.85 71.98 0.64 -2.02 16 26 C -0.17 -4.64 8.37 71.98 0.60 -4.04 16 27 C -0.17 -2.79 5.35 -10.79 -0.06 -2.85 16 28 C -0.18 -2.88 10.18 30.59 0.31 -2.57 16 29 C -0.16 -2.05 9.73 30.59 0.30 -1.75 16 30 H 0.08 1.42 7.29 -2.39 -0.02 1.40 16 31 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 32 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.41 8.70 7.91 -92.70 -0.73 7.97 16 34 H 0.10 3.04 7.43 -2.39 -0.02 3.02 16 35 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.00 -0.09 7.75 -2.38 -0.02 -0.11 16 37 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 38 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 39 H 0.41 14.71 8.71 -92.70 -0.81 13.90 16 40 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.06 2.01 5.88 -2.39 -0.01 2.00 16 43 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.06 1.90 5.88 -2.39 -0.01 1.89 16 47 H 0.10 1.92 8.14 -2.38 -0.02 1.90 16 48 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 49 H 0.12 1.76 8.07 -2.38 -0.02 1.75 16 50 H 0.09 1.53 8.05 -2.38 -0.02 1.51 16 51 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16 52 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 53 H 0.10 1.25 7.61 -2.39 -0.02 1.23 16 Total: -1.00 -72.07 427.58 2.70 -69.37 By element: Atomic # 1 Polarization: 42.55 SS G_CDS: -0.64 Total: 41.91 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: 5.92 Total: 7.93 kcal Atomic # 7 Polarization: -98.62 SS G_CDS: -4.24 Total: -102.85 kcal Atomic # 8 Polarization: -60.50 SS G_CDS: -0.37 Total: -60.87 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.51 kcal Total: -72.07 2.70 -69.37 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496230017.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.886 kcal (2) G-P(sol) polarization free energy of solvation -72.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds