Wall clock time and date at job start Tue Mar 31 2020 23:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.46274 * 2 1 4 4 C 1.53039 * 109.45721 * 240.02905 * 2 1 3 5 5 C 1.53196 * 109.33748 * 178.59861 * 4 2 1 6 6 N 1.46995 * 108.73708 * 54.62190 * 5 4 2 7 7 C 1.34779 * 120.60954 * 126.39083 * 6 5 4 8 8 O 1.21511 * 119.99426 * 180.02562 * 7 6 5 9 9 O 1.34630 * 120.00346 * 0.02562 * 7 6 5 10 10 C 1.45200 * 116.99796 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.47436 * 59.99684 * 10 9 7 12 12 C 1.53003 * 109.46970 * 179.97438 * 10 9 7 13 13 C 1.53004 * 109.47330 * 299.99480 * 10 9 7 14 14 C 1.46925 * 118.75597 * 306.40484 * 6 5 4 15 15 C 1.53033 * 109.46004 * 119.95865 * 2 1 3 16 16 H 1.08997 * 109.50670 * 301.33526 * 15 2 1 17 17 N 1.46498 * 109.50054 * 61.40406 * 15 2 1 18 18 C 1.34775 * 120.00598 * 205.00022 * 17 15 2 19 19 O 1.21284 * 119.99806 * 359.97438 * 18 17 15 20 20 C 1.50700 * 120.00605 * 179.97438 * 18 17 15 21 21 C 1.52997 * 109.47292 * 179.97438 * 20 18 17 22 22 C 1.50700 * 109.46949 * 179.97438 * 21 20 18 23 23 H 1.07999 * 119.99926 * 0.02562 * 22 21 20 24 24 C 1.37877 * 120.00062 * 179.97438 * 22 21 20 25 25 N 1.31520 * 119.99917 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00245 * 180.02562 * 24 22 21 27 27 H 1.48505 * 109.46801 * 90.00291 * 26 24 22 28 28 H 1.48499 * 109.47014 * 210.00343 * 26 24 22 29 29 H 1.48498 * 109.47084 * 330.00461 * 26 24 22 30 30 H 1.08999 * 109.47143 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.46794 * 299.97314 * 1 2 3 32 32 H 1.08999 * 109.47146 * 59.96636 * 1 2 3 33 33 H 1.09002 * 109.49756 * 298.56584 * 4 2 1 34 34 H 1.09000 * 109.49883 * 58.63327 * 4 2 1 35 35 H 1.09001 * 109.58261 * 174.43824 * 5 4 2 36 36 H 1.08996 * 109.58319 * 294.86146 * 5 4 2 37 37 H 1.09000 * 109.46815 * 59.99950 * 11 10 9 38 38 H 1.09000 * 109.47277 * 179.97438 * 11 10 9 39 39 H 1.08994 * 109.47173 * 299.99950 * 11 10 9 40 40 H 1.09003 * 109.47421 * 59.99754 * 12 10 9 41 41 H 1.09000 * 109.47110 * 179.97438 * 12 10 9 42 42 H 1.09000 * 109.47220 * 300.00013 * 12 10 9 43 43 H 1.09003 * 109.46800 * 59.99710 * 13 10 9 44 44 H 1.08995 * 109.47741 * 180.02562 * 13 10 9 45 45 H 1.09000 * 109.46803 * 300.00665 * 13 10 9 46 46 H 1.09004 * 109.58683 * 293.82929 * 14 6 5 47 47 H 1.08993 * 109.58510 * 173.40005 * 14 6 5 48 48 H 0.97003 * 120.00111 * 24.99429 * 17 15 2 49 49 H 1.08998 * 109.47107 * 300.00204 * 20 18 17 50 50 H 1.09004 * 109.46751 * 59.99838 * 20 18 17 51 51 H 1.08998 * 109.47362 * 300.00233 * 21 20 18 52 52 H 1.09004 * 109.47203 * 60.00301 * 21 20 18 53 53 H 0.96990 * 120.00060 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0398 -0.7209 -1.2500 5 6 3.5714 -0.6887 -1.2650 6 7 4.0678 -1.2489 0.0001 7 6 4.9614 -2.2578 0.0000 8 8 5.3640 -2.7127 1.0524 9 8 5.4080 -2.7616 -1.1659 10 6 6.3689 -3.8475 -1.0897 11 6 5.7457 -5.0287 -0.3433 12 6 6.7565 -4.2855 -2.5036 13 6 7.6167 -3.3729 -0.3423 14 6 3.5714 -0.6884 1.2643 15 6 2.0398 -0.7206 1.2501 16 1 1.6573 -0.2205 2.1399 17 7 1.5796 -2.1113 1.2349 18 6 1.4510 -2.7914 2.3913 19 8 1.7168 -2.2521 3.4447 20 6 0.9770 -4.2218 2.3757 21 6 0.9202 -4.7560 3.8083 22 6 0.4456 -6.1862 3.7926 23 1 0.2086 -6.6662 2.8547 24 6 0.3150 -6.8822 4.9756 25 7 0.6042 -6.2977 6.1178 26 14 -0.2727 -8.6552 4.9562 27 1 0.8968 -9.5630 4.8398 28 1 -1.0034 -8.9483 6.2153 29 1 -1.1785 -8.8638 3.7982 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5135 0.8903 32 1 -0.3633 0.5143 -0.8897 33 1 1.6977 -1.7557 -1.2382 34 1 1.6567 -0.2212 -2.1398 35 1 3.9411 -1.2846 -2.0995 36 1 3.9142 0.3408 -1.3683 37 1 4.8568 -5.3668 -0.8758 38 1 6.4669 -5.8440 -0.2865 39 1 5.4692 -4.7170 0.6639 40 1 7.2003 -3.4441 -3.0358 41 1 7.4782 -5.1004 -2.4465 42 1 5.8674 -4.6237 -3.0357 43 1 7.3402 -3.0610 0.6649 44 1 8.3383 -4.1878 -0.2855 45 1 8.0606 -2.5314 -0.8741 46 1 3.9143 0.3411 1.3672 47 1 3.9418 -1.2842 2.0984 48 1 1.3672 -2.5427 0.3924 49 1 -0.0164 -4.2705 1.9298 50 1 1.6684 -4.8272 1.7896 51 1 1.9138 -4.7073 4.2538 52 1 0.2290 -4.1506 4.3947 53 1 0.5119 -6.7872 6.9501 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496398444.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:58:58 Heat of formation + Delta-G solvation = -160.054131 kcal Electronic energy + Delta-G solvation = -32066.834963 eV Core-core repulsion = 27936.932237 eV Total energy + Delta-G solvation = -4129.902727 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.08511 -41.06634 -39.46460 -37.84524 -35.88455 -35.57442 -34.71851 -34.06111 -33.05625 -31.26207 -29.21986 -28.38628 -28.28102 -27.72045 -25.09389 -24.41749 -23.61208 -22.75593 -21.39019 -20.98482 -19.97976 -19.01578 -18.73475 -17.72202 -17.58087 -17.32542 -16.97797 -16.53234 -16.45022 -16.06259 -15.55924 -15.46098 -15.26533 -14.89619 -14.85411 -14.51129 -14.42744 -14.22692 -14.10404 -13.81259 -13.57979 -13.26987 -13.23478 -13.11935 -12.91411 -12.85797 -12.84780 -12.78357 -12.65142 -12.49251 -12.46255 -12.25065 -11.98009 -11.92096 -11.69666 -11.60218 -11.42263 -11.38725 -11.33579 -11.01302 -10.72187 -10.59991 -10.32529 -9.59175 -8.20168 -6.34977 1.09649 1.38980 1.42660 1.53539 1.70359 1.79418 2.24683 2.43022 2.85010 3.12339 3.59790 3.73242 3.75960 3.79470 3.84367 3.94765 3.98432 4.06480 4.29712 4.39140 4.43032 4.47652 4.50824 4.53136 4.59065 4.64828 4.69494 4.72124 4.74949 4.78806 4.82747 4.88914 4.89412 4.98542 5.01381 5.04482 5.13194 5.15152 5.27382 5.32624 5.33712 5.42128 5.44976 5.47238 5.51157 5.58708 5.61457 5.81823 6.14738 6.32175 6.57223 6.82720 7.30714 7.33623 7.35933 8.92746 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009054 B = 0.003608 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3091.765452 B = 7757.951810 C = 9860.665168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 H 0.112 0.888 4 C -0.126 4.126 5 C 0.108 3.892 6 N -0.587 5.587 7 C 0.643 3.357 8 O -0.602 6.602 9 O -0.358 6.358 10 C 0.128 3.872 11 C -0.183 4.183 12 C -0.131 4.131 13 C -0.179 4.179 14 C 0.118 3.882 15 C 0.133 3.867 16 H 0.083 0.917 17 N -0.707 5.707 18 C 0.513 3.487 19 O -0.584 6.584 20 C -0.119 4.119 21 C 0.047 3.953 22 C -0.545 4.545 23 H 0.074 0.926 24 C -0.006 4.006 25 N -0.937 5.937 26 Si 0.975 3.025 27 H -0.273 1.273 28 H -0.283 1.283 29 H -0.254 1.254 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.082 0.918 33 H 0.058 0.942 34 H 0.116 0.884 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.062 0.938 38 H 0.086 0.914 39 H 0.048 0.952 40 H 0.077 0.923 41 H 0.097 0.903 42 H 0.071 0.929 43 H 0.052 0.948 44 H 0.086 0.914 45 H 0.069 0.931 46 H 0.105 0.895 47 H 0.053 0.947 48 H 0.408 0.592 49 H 0.104 0.896 50 H 0.087 0.913 51 H -0.025 1.025 52 H -0.015 1.015 53 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.054 13.678 -26.983 31.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.105 4.105 3 H 0.130 0.870 4 C -0.164 4.164 5 C -0.013 4.013 6 N -0.328 5.328 7 C 0.398 3.602 8 O -0.493 6.493 9 O -0.272 6.272 10 C 0.092 3.908 11 C -0.240 4.240 12 C -0.188 4.188 13 C -0.236 4.236 14 C -0.005 4.005 15 C 0.027 3.973 16 H 0.101 0.899 17 N -0.360 5.360 18 C 0.301 3.699 19 O -0.464 6.464 20 C -0.159 4.159 21 C 0.010 3.990 22 C -0.583 4.583 23 H 0.092 0.908 24 C -0.204 4.204 25 N -0.577 5.577 26 Si 0.799 3.201 27 H -0.198 1.198 28 H -0.208 1.208 29 H -0.177 1.177 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.101 0.899 33 H 0.077 0.923 34 H 0.134 0.866 35 H 0.116 0.884 36 H 0.114 0.886 37 H 0.081 0.919 38 H 0.105 0.895 39 H 0.067 0.933 40 H 0.096 0.904 41 H 0.116 0.884 42 H 0.090 0.910 43 H 0.071 0.929 44 H 0.105 0.895 45 H 0.088 0.912 46 H 0.123 0.877 47 H 0.072 0.928 48 H 0.245 0.755 49 H 0.122 0.878 50 H 0.106 0.894 51 H -0.007 1.007 52 H 0.004 0.996 53 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.421 13.854 -25.805 30.476 hybrid contribution -0.145 -1.188 1.005 1.563 sum 8.276 12.666 -24.800 29.051 Atomic orbital electron populations 1.21800 0.93912 1.01943 1.02578 1.21401 0.96709 1.00467 0.91922 0.86981 1.22027 0.94144 1.01318 0.98928 1.22053 0.94739 1.00671 0.83849 1.47003 1.42622 1.34016 1.09149 1.18281 0.79605 0.80055 0.82290 1.90959 1.61989 1.62984 1.33370 1.86257 1.58797 1.50905 1.31249 1.22344 0.86273 0.83331 0.98851 1.22480 1.02046 0.98318 1.01140 1.21849 1.02902 1.02746 0.91267 1.22458 0.97067 1.02905 1.01202 1.22013 0.94263 0.99592 0.84613 1.21491 0.92269 0.82447 1.01056 0.89935 1.45918 1.68184 1.13619 1.08311 1.21186 0.75905 0.89198 0.83572 1.90643 1.51619 1.71110 1.33019 1.21595 1.02806 0.91036 1.00459 1.18626 0.94402 0.94929 0.91077 1.21687 1.44968 0.97957 0.93679 0.90834 1.26161 0.95419 1.03822 0.94975 1.70186 1.49744 1.39219 0.98561 0.85302 0.78607 0.78131 0.78092 1.19811 1.20838 1.17743 0.93484 0.93444 0.89936 0.92307 0.86600 0.88415 0.88601 0.91908 0.89505 0.93341 0.90439 0.88405 0.90966 0.92902 0.89469 0.91190 0.87662 0.92844 0.75498 0.87755 0.89421 1.00683 0.99647 0.92801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.05 71.98 0.65 -1.28 16 2 C -0.09 -1.10 2.48 -10.77 -0.03 -1.13 16 3 H 0.11 0.95 8.14 -2.38 -0.02 0.93 16 4 C -0.13 -1.23 5.19 30.67 0.16 -1.07 16 5 C 0.11 1.32 6.45 86.35 0.56 1.88 16 6 N -0.59 -13.12 2.89 -949.07 -2.74 -15.86 16 7 C 0.64 18.62 7.74 129.79 1.00 19.63 16 8 O -0.60 -23.04 11.29 19.81 0.22 -22.82 16 9 O -0.36 -8.48 8.53 -55.39 -0.47 -8.95 16 10 C 0.13 2.74 1.13 -10.79 -0.01 2.73 16 11 C -0.18 -4.64 8.37 71.98 0.60 -4.03 16 12 C -0.13 -1.69 8.85 71.98 0.64 -1.06 16 13 C -0.18 -3.90 8.37 71.98 0.60 -3.30 16 14 C 0.12 2.99 6.04 86.37 0.52 3.51 16 15 C 0.13 3.10 2.24 45.07 0.10 3.20 16 16 H 0.08 2.29 7.58 -2.39 -0.02 2.27 16 17 N -0.71 -20.28 4.25 -442.17 -1.88 -22.16 16 18 C 0.51 21.39 7.80 87.66 0.68 22.07 16 19 O -0.58 -30.19 15.64 -3.04 -0.05 -30.23 16 20 C -0.12 -5.26 5.64 29.85 0.17 -5.09 16 21 C 0.05 2.81 4.26 29.85 0.13 2.93 16 22 C -0.55 -32.60 9.11 25.60 0.23 -32.37 16 23 H 0.07 4.02 7.74 -2.91 -0.02 4.00 16 24 C -0.01 -0.38 5.46 84.65 0.46 0.08 16 25 N -0.94 -61.56 13.29 21.45 0.28 -61.28 16 26 Si 0.98 45.79 29.54 68.60 2.03 47.82 16 27 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 28 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 29 H -0.25 -11.00 7.11 99.48 0.71 -10.30 16 30 H 0.05 0.75 7.54 -2.39 -0.02 0.73 16 31 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 32 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.06 0.73 6.40 -2.39 -0.02 0.71 16 34 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.10 1.15 6.93 -2.39 -0.02 1.14 16 36 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.05 1.67 5.88 -2.39 -0.01 1.66 16 40 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.05 1.57 5.88 -2.39 -0.01 1.55 16 44 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.07 1.30 8.14 -2.39 -0.02 1.29 16 46 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 47 H 0.05 1.96 7.00 -2.39 -0.02 1.94 16 48 H 0.41 9.52 6.64 -92.71 -0.62 8.90 16 49 H 0.10 4.00 8.14 -2.39 -0.02 3.98 16 50 H 0.09 3.65 8.14 -2.38 -0.02 3.63 16 51 H -0.03 -1.72 8.10 -2.39 -0.02 -1.74 16 52 H -0.01 -0.98 8.10 -2.38 -0.02 -1.00 16 53 H 0.26 16.13 8.31 -92.72 -0.77 15.36 16 Total: -1.00 -87.80 413.17 4.13 -83.67 By element: Atomic # 1 Polarization: 22.82 SS G_CDS: 0.27 Total: 23.08 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: 6.47 Total: 6.72 kcal Atomic # 7 Polarization: -94.96 SS G_CDS: -4.34 Total: -99.30 kcal Atomic # 8 Polarization: -61.70 SS G_CDS: -0.30 Total: -62.00 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -87.80 4.13 -83.67 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496398444.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.382 kcal (2) G-P(sol) polarization free energy of solvation -87.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds