Wall clock time and date at job start Tue Mar 31 2020 23:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.45181 * 2 1 4 4 C 1.53045 * 109.45946 * 119.96839 * 2 1 3 5 5 C 1.53190 * 109.31214 * 181.38165 * 4 2 1 6 6 N 1.46925 * 108.77732 * 305.36472 * 5 4 2 7 7 C 1.34766 * 120.62992 * 233.58353 * 6 5 4 8 8 O 1.21514 * 120.00446 * 180.02562 * 7 6 5 9 9 O 1.34636 * 120.00196 * 0.02562 * 7 6 5 10 10 C 1.45200 * 117.00546 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.47145 * 59.99792 * 10 9 7 12 12 C 1.52999 * 109.47387 * 180.02562 * 10 9 7 13 13 C 1.53007 * 109.46862 * 300.00293 * 10 9 7 14 14 C 1.46927 * 118.73836 * 53.61035 * 6 5 4 15 15 C 1.53039 * 109.45878 * 240.03167 * 2 1 3 16 16 H 1.09010 * 109.52487 * 58.65160 * 15 2 1 17 17 N 1.46499 * 109.50009 * 298.56926 * 15 2 1 18 18 C 1.34784 * 119.99971 * 155.16086 * 17 15 2 19 19 O 1.21274 * 119.99897 * 359.72827 * 18 17 15 20 20 C 1.50695 * 119.99635 * 179.97438 * 18 17 15 21 21 C 1.53002 * 109.47004 * 179.97438 * 20 18 17 22 22 C 1.50700 * 109.47331 * 180.02562 * 21 20 18 23 23 H 1.07999 * 119.99988 * 359.97438 * 22 21 20 24 24 C 1.37875 * 120.00042 * 180.02562 * 22 21 20 25 25 N 1.31508 * 120.00130 * 180.02562 * 24 22 21 26 26 Si 1.86803 * 120.00039 * 0.02562 * 24 22 21 27 27 H 1.48498 * 109.47174 * 89.99966 * 26 24 22 28 28 H 1.48504 * 109.46913 * 210.00216 * 26 24 22 29 29 H 1.48501 * 109.47062 * 330.00015 * 26 24 22 30 30 H 1.09002 * 109.47581 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47488 * 299.96677 * 1 2 3 32 32 H 1.09003 * 109.46863 * 59.96339 * 1 2 3 33 33 H 1.09003 * 109.49406 * 61.43031 * 4 2 1 34 34 H 1.09004 * 109.51907 * 301.35080 * 4 2 1 35 35 H 1.08996 * 109.58195 * 185.57384 * 5 4 2 36 36 H 1.09006 * 109.69807 * 65.21935 * 5 4 2 37 37 H 1.09003 * 109.46884 * 59.99914 * 11 10 9 38 38 H 1.08990 * 109.47467 * 180.02562 * 11 10 9 39 39 H 1.09000 * 109.47330 * 300.00670 * 11 10 9 40 40 H 1.08995 * 109.46942 * 60.00213 * 12 10 9 41 41 H 1.09002 * 109.46623 * 180.02562 * 12 10 9 42 42 H 1.09004 * 109.46900 * 299.99618 * 12 10 9 43 43 H 1.09000 * 109.47010 * 59.99699 * 13 10 9 44 44 H 1.09002 * 109.46868 * 179.97438 * 13 10 9 45 45 H 1.08996 * 109.46923 * 299.99661 * 13 10 9 46 46 H 1.08996 * 109.58504 * 186.60660 * 14 6 5 47 47 H 1.09001 * 109.58747 * 66.17846 * 14 6 5 48 48 H 0.96999 * 119.99984 * 335.15934 * 17 15 2 49 49 H 1.09005 * 109.47403 * 300.00056 * 20 18 17 50 50 H 1.09002 * 109.47422 * 60.00295 * 20 18 17 51 51 H 1.08997 * 109.47244 * 300.00535 * 21 20 18 52 52 H 1.09002 * 109.46787 * 59.99910 * 21 20 18 53 53 H 0.97000 * 120.00459 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7208 1.2501 5 6 3.5713 -0.6887 1.2642 6 7 4.0678 -1.2490 0.0000 7 6 4.9620 -2.2573 0.0000 8 8 5.3653 -2.7118 -1.0523 9 8 5.4084 -2.7612 1.1659 10 6 6.3701 -3.8464 1.0900 11 6 7.6178 -3.3709 0.3431 12 6 6.7574 -4.2845 2.5039 13 6 5.7478 -5.0279 0.3430 14 6 3.5713 -0.6886 -1.2643 15 6 2.0398 -0.7208 -1.2501 16 1 1.6572 -0.2212 -2.1402 17 7 1.5800 -2.1117 -1.2343 18 6 1.4546 -2.7932 -2.3903 19 8 1.7176 -2.2534 -3.4440 20 6 0.9822 -4.2241 -2.3740 21 6 0.9277 -4.7596 -3.8062 22 6 0.4547 -6.1903 -3.7899 23 1 0.2171 -6.6699 -2.8519 24 6 0.3262 -6.8874 -4.9725 25 7 -0.0870 -8.1358 -4.9584 26 14 0.7392 -6.0586 -6.5949 27 1 2.1737 -6.2763 -6.9109 28 1 -0.0992 -6.6387 -7.6746 29 1 0.4713 -4.6018 -6.4888 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5133 0.8902 32 1 -0.3633 0.5144 -0.8897 33 1 1.6977 -1.7557 1.2383 34 1 1.6572 -0.2212 2.1401 35 1 3.9415 -1.2846 2.0984 36 1 3.9163 0.3400 1.3685 37 1 8.0611 -2.5292 0.8752 38 1 8.3395 -4.1856 0.2857 39 1 7.3416 -3.0590 -0.6642 40 1 5.8683 -4.6235 3.0355 41 1 7.4796 -5.0989 2.4467 42 1 7.2006 -3.4430 3.0364 43 1 5.4715 -4.7160 -0.6642 44 1 6.4698 -5.8424 0.2856 45 1 4.8589 -5.3666 0.8751 46 1 3.9416 -1.2846 -2.0984 47 1 3.9143 0.3408 -1.3674 48 1 1.3659 -2.5422 -0.3918 49 1 1.6731 -4.8281 -1.7858 50 1 -0.0121 -4.2734 -1.9300 51 1 0.2366 -4.1554 -4.3939 52 1 1.9218 -4.7101 -4.2506 53 1 -0.1771 -8.6264 -5.7903 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496398445.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:59:02 Heat of formation + Delta-G solvation = -157.303763 kcal Electronic energy + Delta-G solvation = -32140.444344 eV Core-core repulsion = 28010.660882 eV Total energy + Delta-G solvation = -4129.783462 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.08961 -41.08267 -39.48478 -37.84820 -35.89117 -35.56339 -34.72414 -34.06936 -33.34576 -31.34496 -29.24996 -28.38776 -28.28845 -27.98380 -25.02787 -24.38789 -23.32608 -22.74092 -21.37381 -20.98724 -19.98152 -19.30479 -18.84687 -17.72574 -17.69985 -17.33545 -16.98138 -16.54869 -16.30520 -16.06135 -15.58143 -15.46326 -15.27210 -14.99659 -14.87452 -14.64304 -14.47530 -14.41665 -14.21565 -13.84272 -13.58641 -13.43705 -13.24287 -13.12472 -12.98567 -12.88756 -12.85885 -12.79069 -12.65638 -12.46611 -12.25565 -12.16143 -12.01364 -11.91758 -11.81738 -11.61305 -11.44790 -11.42019 -11.38903 -11.01344 -10.81743 -10.76383 -10.33663 -9.59569 -8.34971 -6.37838 1.09920 1.29979 1.31043 1.46791 1.67320 1.78780 2.24658 2.31927 2.84745 3.00525 3.59491 3.73075 3.75426 3.79121 3.84249 3.94351 3.96158 4.03256 4.29288 4.32426 4.39619 4.41612 4.50436 4.52346 4.58841 4.64460 4.68897 4.71805 4.74727 4.78732 4.82481 4.88622 4.89066 4.93414 4.98519 5.04380 5.12573 5.14838 5.26790 5.27496 5.32161 5.33252 5.39097 5.42594 5.47054 5.50745 5.57095 5.61153 6.19806 6.31706 6.54404 6.67406 7.27440 7.29684 7.30194 8.80834 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009298 B = 0.003763 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3010.714460 B = 7438.547162 C = 9410.020700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 H 0.112 0.888 4 C -0.127 4.127 5 C 0.108 3.892 6 N -0.587 5.587 7 C 0.643 3.357 8 O -0.601 6.601 9 O -0.359 6.359 10 C 0.129 3.871 11 C -0.179 4.179 12 C -0.132 4.132 13 C -0.183 4.183 14 C 0.118 3.882 15 C 0.133 3.867 16 H 0.087 0.913 17 N -0.708 5.708 18 C 0.516 3.484 19 O -0.581 6.581 20 C -0.117 4.117 21 C 0.010 3.990 22 C -0.530 4.530 23 H 0.049 0.951 24 C 0.017 3.983 25 N -0.942 5.942 26 Si 0.937 3.063 27 H -0.272 1.272 28 H -0.273 1.273 29 H -0.261 1.261 30 H 0.046 0.954 31 H 0.080 0.920 32 H 0.049 0.951 33 H 0.057 0.943 34 H 0.114 0.886 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.069 0.931 38 H 0.086 0.914 39 H 0.054 0.946 40 H 0.070 0.930 41 H 0.097 0.903 42 H 0.077 0.923 43 H 0.050 0.950 44 H 0.085 0.915 45 H 0.060 0.940 46 H 0.056 0.944 47 H 0.106 0.894 48 H 0.407 0.593 49 H 0.086 0.914 50 H 0.103 0.897 51 H 0.013 0.987 52 H 0.001 0.999 53 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.483 20.187 22.896 32.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.105 4.105 3 H 0.131 0.869 4 C -0.165 4.165 5 C -0.013 4.013 6 N -0.328 5.328 7 C 0.398 3.602 8 O -0.492 6.492 9 O -0.273 6.273 10 C 0.093 3.907 11 C -0.236 4.236 12 C -0.189 4.189 13 C -0.240 4.240 14 C -0.005 4.005 15 C 0.028 3.972 16 H 0.105 0.895 17 N -0.361 5.361 18 C 0.304 3.696 19 O -0.461 6.461 20 C -0.157 4.157 21 C -0.028 4.028 22 C -0.568 4.568 23 H 0.067 0.933 24 C -0.181 4.181 25 N -0.582 5.582 26 Si 0.761 3.239 27 H -0.198 1.198 28 H -0.198 1.198 29 H -0.186 1.186 30 H 0.065 0.935 31 H 0.099 0.901 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.132 0.868 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.088 0.912 38 H 0.105 0.895 39 H 0.073 0.927 40 H 0.089 0.911 41 H 0.116 0.884 42 H 0.096 0.904 43 H 0.069 0.931 44 H 0.104 0.896 45 H 0.079 0.921 46 H 0.075 0.925 47 H 0.124 0.876 48 H 0.245 0.755 49 H 0.104 0.896 50 H 0.121 0.879 51 H 0.031 0.969 52 H 0.019 0.981 53 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.802 20.235 21.783 31.633 hybrid contribution 0.050 -0.716 -1.149 1.355 sum 10.851 19.519 20.634 30.406 Atomic orbital electron populations 1.21800 0.93938 1.01919 1.02608 1.21399 0.96675 1.00492 0.91956 0.86944 1.22026 0.94142 1.01291 0.99025 1.22022 0.94720 1.00657 0.83920 1.46989 1.42579 1.34035 1.09207 1.18281 0.79608 0.80051 0.82284 1.90948 1.61979 1.62988 1.33298 1.86260 1.58761 1.50915 1.31370 1.22332 0.86298 0.83330 0.98781 1.22453 0.96996 1.02883 1.01245 1.21852 1.02864 1.02748 0.91385 1.22486 1.01984 0.98327 1.01220 1.22039 0.94201 0.99687 0.84602 1.21512 0.92299 0.82299 1.01117 0.89463 1.45941 1.68037 1.13674 1.08464 1.21047 0.75892 0.88951 0.83665 1.90623 1.51752 1.71075 1.32638 1.21459 1.03055 0.91187 0.99958 1.19166 0.95737 0.94311 0.93612 1.21401 1.44451 0.96850 0.94119 0.93307 1.25764 0.94429 0.95205 1.02712 1.70011 1.48633 1.10892 1.28667 0.85857 0.78702 0.79698 0.79635 1.19780 1.19796 1.18571 0.93529 0.90132 0.93233 0.92388 0.86766 0.88618 0.88591 0.91185 0.89516 0.92740 0.91082 0.88443 0.90408 0.93119 0.89574 0.92099 0.92491 0.87626 0.75531 0.89562 0.87907 0.96862 0.98097 0.92282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.05 71.98 0.65 -1.11 16 2 C -0.09 -0.98 2.48 -10.77 -0.03 -1.01 16 3 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 4 C -0.13 -1.14 5.20 30.67 0.16 -0.99 16 5 C 0.11 1.24 6.45 86.36 0.56 1.80 16 6 N -0.59 -12.33 2.89 -949.27 -2.74 -15.07 16 7 C 0.64 17.86 7.74 129.79 1.00 18.86 16 8 O -0.60 -21.96 11.29 19.80 0.22 -21.74 16 9 O -0.36 -8.30 8.53 -55.46 -0.47 -8.78 16 10 C 0.13 2.71 1.13 -10.79 -0.01 2.70 16 11 C -0.18 -3.76 8.37 71.98 0.60 -3.16 16 12 C -0.13 -1.72 8.85 71.98 0.64 -1.08 16 13 C -0.18 -4.61 8.37 71.98 0.60 -4.01 16 14 C 0.12 2.71 6.03 86.36 0.52 3.23 16 15 C 0.13 2.81 2.24 45.07 0.10 2.91 16 16 H 0.09 2.15 7.58 -2.38 -0.02 2.13 16 17 N -0.71 -18.75 4.25 -442.15 -1.88 -20.63 16 18 C 0.52 19.66 7.80 87.65 0.68 20.34 16 19 O -0.58 -26.83 15.64 -3.01 -0.05 -26.87 16 20 C -0.12 -4.85 5.64 29.85 0.17 -4.68 16 21 C 0.01 0.52 3.33 29.85 0.10 0.62 16 22 C -0.53 -32.05 9.66 25.60 0.25 -31.80 16 23 H 0.05 3.09 7.99 -2.91 -0.02 3.07 16 24 C 0.02 1.04 5.47 84.66 0.46 1.50 16 25 N -0.94 -60.45 13.96 21.45 0.30 -60.16 16 26 Si 0.94 48.69 27.47 68.60 1.88 50.57 16 27 H -0.27 -13.90 7.11 99.48 0.71 -13.19 16 28 H -0.27 -13.39 7.11 99.48 0.71 -12.69 16 29 H -0.26 -13.52 6.54 99.48 0.65 -12.87 16 30 H 0.05 0.70 7.54 -2.39 -0.02 0.68 16 31 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.06 0.69 6.40 -2.39 -0.02 0.67 16 34 H 0.11 0.42 8.14 -2.38 -0.02 0.40 16 35 H 0.10 1.10 6.93 -2.39 -0.02 1.08 16 36 H 0.10 0.68 8.14 -2.38 -0.02 0.66 16 37 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.05 1.55 5.88 -2.39 -0.01 1.54 16 40 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 43 H 0.05 1.71 5.88 -2.39 -0.01 1.69 16 44 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 46 H 0.06 1.92 7.00 -2.39 -0.02 1.90 16 47 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 48 H 0.41 8.96 6.64 -92.71 -0.62 8.35 16 49 H 0.09 3.49 8.14 -2.38 -0.02 3.47 16 50 H 0.10 3.82 8.14 -2.39 -0.02 3.80 16 51 H 0.01 0.72 7.16 -2.39 -0.02 0.70 16 52 H 0.00 0.04 7.53 -2.39 -0.02 0.02 16 53 H 0.27 16.05 8.31 -92.71 -0.77 15.27 16 Total: -1.00 -83.34 409.55 3.94 -79.40 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: 0.22 Total: 19.15 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: 6.46 Total: 4.12 kcal Atomic # 7 Polarization: -91.53 SS G_CDS: -4.32 Total: -95.86 kcal Atomic # 8 Polarization: -57.09 SS G_CDS: -0.30 Total: -57.38 kcal Atomic # 14 Polarization: 48.69 SS G_CDS: 1.88 Total: 50.57 kcal Total: -83.34 3.94 -79.40 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496398445.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.904 kcal (2) G-P(sol) polarization free energy of solvation -83.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds