Wall clock time and date at job start Tue Mar 31 2020 23:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.44992 * 2 1 4 4 C 1.53039 * 109.46366 * 119.97251 * 2 1 3 5 5 C 1.53182 * 109.31685 * 181.38631 * 4 2 1 6 6 N 1.46939 * 108.77534 * 305.36549 * 5 4 2 7 7 C 1.34778 * 120.62557 * 233.61280 * 6 5 4 8 8 O 1.21514 * 119.99082 * 179.97438 * 7 6 5 9 9 O 1.34632 * 120.00395 * 359.97438 * 7 6 5 10 10 C 1.45196 * 116.99838 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47522 * 60.00094 * 10 9 7 12 12 C 1.52997 * 109.47130 * 180.02562 * 10 9 7 13 13 C 1.53002 * 109.47357 * 300.00010 * 10 9 7 14 14 C 1.46919 * 118.73846 * 53.60575 * 6 5 4 15 15 C 1.53045 * 109.46046 * 240.03850 * 2 1 3 16 16 H 1.08999 * 109.49721 * 298.60120 * 15 2 1 17 17 N 1.46505 * 109.49531 * 58.66218 * 15 2 1 18 18 C 1.34777 * 120.00115 * 205.00054 * 17 15 2 19 19 O 1.21282 * 119.99620 * 359.97438 * 18 17 15 20 20 C 1.50697 * 120.00369 * 180.02562 * 18 17 15 21 21 C 1.52997 * 109.47466 * 180.02562 * 20 18 17 22 22 C 1.50701 * 109.47212 * 179.97438 * 21 20 18 23 23 H 1.07998 * 120.00129 * 0.02562 * 22 21 20 24 24 C 1.37880 * 119.99861 * 179.97438 * 22 21 20 25 25 N 1.31510 * 119.99913 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 119.99734 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47094 * 90.00289 * 26 24 22 28 28 H 1.48505 * 109.47195 * 210.00171 * 26 24 22 29 29 H 1.48493 * 109.47449 * 330.00136 * 26 24 22 30 30 H 1.09003 * 109.47020 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46961 * 299.96578 * 1 2 3 32 32 H 1.09008 * 109.47041 * 59.95839 * 1 2 3 33 33 H 1.09001 * 109.49181 * 301.33642 * 4 2 1 34 34 H 1.09004 * 109.49363 * 61.43033 * 4 2 1 35 35 H 1.08997 * 109.59046 * 65.14432 * 5 4 2 36 36 H 1.08997 * 109.58880 * 185.57851 * 5 4 2 37 37 H 1.09002 * 109.46611 * 59.99828 * 11 10 9 38 38 H 1.08998 * 109.47654 * 180.02562 * 11 10 9 39 39 H 1.09001 * 109.47133 * 300.00655 * 11 10 9 40 40 H 1.09000 * 109.47639 * 59.99746 * 12 10 9 41 41 H 1.08998 * 109.47572 * 180.02562 * 12 10 9 42 42 H 1.08999 * 109.47152 * 299.99641 * 12 10 9 43 43 H 1.09005 * 109.47230 * 60.00236 * 13 10 9 44 44 H 1.08998 * 109.47292 * 179.97438 * 13 10 9 45 45 H 1.08997 * 109.47306 * 300.00250 * 13 10 9 46 46 H 1.09002 * 109.58719 * 186.60717 * 14 6 5 47 47 H 1.08997 * 109.58615 * 66.18244 * 14 6 5 48 48 H 0.97003 * 120.00244 * 25.00084 * 17 15 2 49 49 H 1.09002 * 109.47120 * 59.99760 * 20 18 17 50 50 H 1.08998 * 109.46862 * 300.00562 * 20 18 17 51 51 H 1.09002 * 109.47153 * 59.99773 * 21 20 18 52 52 H 1.09001 * 109.46832 * 299.99964 * 21 20 18 53 53 H 0.97002 * 119.99768 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0279 0.0000 4 6 2.0399 -0.7209 1.2500 5 6 3.5714 -0.6887 1.2642 6 7 4.0679 -1.2488 -0.0003 7 6 4.9617 -2.2576 -0.0003 8 8 5.3643 -2.7124 -1.0527 9 8 5.4085 -2.7612 1.1656 10 6 6.3705 -3.8461 1.0895 11 6 7.6180 -3.3701 0.3424 12 6 6.7582 -4.2840 2.5032 13 6 5.7487 -5.0278 0.3426 14 6 3.5714 -0.6885 -1.2644 15 6 2.0399 -0.7207 -1.2502 16 1 1.6973 -1.7554 -1.2388 17 7 1.5255 -0.0485 -2.4460 18 6 1.3970 -0.7319 -3.6005 19 8 1.7076 -1.9032 -3.6496 20 6 0.8685 -0.0403 -4.8307 21 6 0.8223 -1.0332 -5.9938 22 6 0.2932 -0.3418 -7.2239 23 1 0.0178 0.7016 -7.1805 24 6 0.1616 -1.0410 -8.4049 25 7 0.4974 -2.3114 -8.4578 26 14 -0.4935 -0.1837 -9.9298 27 1 0.6376 0.4032 -10.6922 28 1 -1.2077 -1.1677 -10.7825 29 1 -1.4314 0.8948 -9.5269 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5133 0.8903 32 1 -0.3633 0.5145 -0.8897 33 1 1.6573 -0.2209 2.1397 34 1 1.6978 -1.7558 1.2381 35 1 3.9143 0.3408 1.3672 36 1 3.9417 -1.2847 2.0982 37 1 8.0610 -2.5283 0.8746 38 1 8.3400 -4.1846 0.2849 39 1 7.3415 -3.0583 -0.6648 40 1 5.8694 -4.6233 3.0352 41 1 7.4808 -5.0981 2.4462 42 1 7.2012 -3.4424 3.0357 43 1 5.4721 -4.7161 -0.6647 44 1 6.4710 -5.8420 0.2851 45 1 4.8600 -5.3669 0.8748 46 1 3.9417 -1.2843 -2.0987 47 1 3.9143 0.3410 -1.3674 48 1 1.2775 0.8885 -2.4068 49 1 1.5230 0.7922 -5.0890 50 1 -0.1357 0.3347 -4.6335 51 1 0.1676 -1.8655 -5.7353 52 1 1.8264 -1.4086 -6.1912 53 1 0.4045 -2.8034 -9.2887 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496398446.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:59:05 Heat of formation + Delta-G solvation = -162.833504 kcal Electronic energy + Delta-G solvation = -31071.600830 eV Core-core repulsion = 26941.577581 eV Total energy + Delta-G solvation = -4130.023249 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.08436 -41.05203 -39.54890 -37.88855 -36.09500 -35.55886 -34.88063 -34.20997 -33.04535 -31.00138 -29.30428 -28.41201 -28.30443 -27.69919 -25.14761 -24.51379 -23.20441 -22.81014 -21.57125 -21.02538 -20.23665 -19.00887 -18.79731 -17.77086 -17.53046 -17.38727 -17.04622 -16.58123 -16.41595 -16.09793 -15.61943 -15.59217 -15.28754 -14.97068 -14.72396 -14.53347 -14.51727 -14.22274 -14.13802 -13.89028 -13.53326 -13.30819 -13.23938 -13.14461 -12.93209 -12.88912 -12.84288 -12.80183 -12.52819 -12.48739 -12.47518 -12.27184 -11.98856 -11.91926 -11.71868 -11.63871 -11.48869 -11.43060 -11.31044 -11.12026 -10.72127 -10.58447 -10.38912 -9.69597 -8.18446 -6.33018 0.98677 1.41206 1.44563 1.55415 1.66873 1.73822 2.21445 2.43930 2.82513 3.14495 3.54007 3.69869 3.73342 3.77029 3.82703 3.92208 3.94461 4.08503 4.16458 4.30830 4.45950 4.48784 4.51343 4.56678 4.57084 4.63644 4.65779 4.72462 4.74151 4.79320 4.80571 4.85657 4.86827 4.94992 5.02477 5.07340 5.10434 5.11926 5.24647 5.26220 5.31732 5.33973 5.43122 5.46802 5.48580 5.57714 5.62339 5.85076 6.16647 6.23926 6.62211 6.86201 7.22061 7.36253 7.38162 8.94462 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013703 B = 0.002445 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.834371 B =11450.291156 C =12994.774314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.088 4.088 3 H 0.111 0.889 4 C -0.122 4.122 5 C 0.106 3.894 6 N -0.591 5.591 7 C 0.643 3.357 8 O -0.601 6.601 9 O -0.357 6.357 10 C 0.125 3.875 11 C -0.179 4.179 12 C -0.131 4.131 13 C -0.183 4.183 14 C 0.121 3.879 15 C 0.141 3.859 16 H 0.049 0.951 17 N -0.706 5.706 18 C 0.511 3.489 19 O -0.589 6.589 20 C -0.117 4.117 21 C 0.041 3.959 22 C -0.541 4.541 23 H 0.079 0.921 24 C -0.010 4.010 25 N -0.940 5.940 26 Si 0.976 3.024 27 H -0.272 1.272 28 H -0.287 1.287 29 H -0.252 1.252 30 H 0.035 0.965 31 H 0.084 0.916 32 H 0.058 0.942 33 H 0.121 0.879 34 H 0.051 0.949 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.052 0.948 40 H 0.071 0.929 41 H 0.100 0.900 42 H 0.076 0.924 43 H 0.048 0.952 44 H 0.091 0.909 45 H 0.061 0.939 46 H 0.051 0.949 47 H 0.099 0.901 48 H 0.421 0.579 49 H 0.107 0.893 50 H 0.108 0.892 51 H -0.021 1.021 52 H -0.023 1.023 53 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.345 7.517 30.890 32.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.107 4.107 3 H 0.129 0.871 4 C -0.160 4.160 5 C -0.015 4.015 6 N -0.332 5.332 7 C 0.398 3.602 8 O -0.492 6.492 9 O -0.272 6.272 10 C 0.088 3.912 11 C -0.236 4.236 12 C -0.188 4.188 13 C -0.240 4.240 14 C -0.002 4.002 15 C 0.035 3.965 16 H 0.067 0.933 17 N -0.361 5.361 18 C 0.299 3.701 19 O -0.468 6.468 20 C -0.157 4.157 21 C 0.004 3.996 22 C -0.579 4.579 23 H 0.097 0.903 24 C -0.208 4.208 25 N -0.580 5.580 26 Si 0.800 3.200 27 H -0.197 1.197 28 H -0.213 1.213 29 H -0.176 1.176 30 H 0.054 0.946 31 H 0.103 0.897 32 H 0.077 0.923 33 H 0.139 0.861 34 H 0.070 0.930 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.088 0.912 38 H 0.108 0.892 39 H 0.071 0.929 40 H 0.090 0.910 41 H 0.119 0.881 42 H 0.095 0.905 43 H 0.067 0.933 44 H 0.110 0.890 45 H 0.080 0.920 46 H 0.070 0.930 47 H 0.117 0.883 48 H 0.259 0.741 49 H 0.125 0.875 50 H 0.126 0.874 51 H -0.002 1.002 52 H -0.004 1.004 53 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.743 6.353 30.492 32.351 hybrid contribution -0.242 -0.330 -1.629 1.680 sum 8.502 6.023 28.863 30.686 Atomic orbital electron populations 1.21813 0.93731 1.01494 1.03202 1.21433 0.96906 1.00810 0.91540 0.87100 1.21998 0.94159 1.01169 0.98687 1.22099 0.94713 1.00913 0.83731 1.47009 1.42760 1.34258 1.09191 1.18273 0.79560 0.79973 0.82426 1.90947 1.61972 1.62965 1.33318 1.86267 1.58797 1.51093 1.31017 1.22421 0.86283 0.83370 0.99080 1.22460 0.97022 1.03007 1.01151 1.21854 1.02919 1.02829 0.91150 1.22489 1.02084 0.98330 1.01090 1.21917 0.94246 0.99452 0.84576 1.21228 0.91913 0.97325 0.86080 0.93307 1.45791 1.66414 1.15231 1.08627 1.21436 0.76273 0.86621 0.85739 1.90699 1.51263 1.19354 1.85501 1.21631 1.03213 0.99763 0.91089 1.18689 0.94522 0.93708 0.92722 1.21729 1.43017 0.97796 0.95365 0.90281 1.26199 0.95795 0.95487 1.03280 1.70199 1.49505 1.10386 1.27944 0.85286 0.78639 0.78233 0.77867 1.19743 1.21286 1.17594 0.94588 0.89671 0.92315 0.86133 0.92974 0.88195 0.88196 0.91234 0.89181 0.92938 0.91013 0.88132 0.90483 0.93276 0.89048 0.92001 0.93026 0.88267 0.74070 0.87500 0.87361 1.00211 1.00438 0.92921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.02 71.98 0.65 -1.35 16 2 C -0.09 -1.20 2.27 -10.77 -0.02 -1.23 16 3 H 0.11 0.92 8.14 -2.38 -0.02 0.90 16 4 C -0.12 -1.39 5.36 30.67 0.16 -1.23 16 5 C 0.11 1.41 6.45 86.36 0.56 1.96 16 6 N -0.59 -14.06 2.97 -949.26 -2.82 -16.88 16 7 C 0.64 18.98 7.74 129.79 1.00 19.98 16 8 O -0.60 -22.93 11.29 19.80 0.22 -22.70 16 9 O -0.36 -8.43 8.53 -55.42 -0.47 -8.90 16 10 C 0.12 2.51 1.13 -10.80 -0.01 2.50 16 11 C -0.18 -3.67 8.37 71.98 0.60 -3.07 16 12 C -0.13 -1.51 8.85 71.98 0.64 -0.88 16 13 C -0.18 -4.20 8.37 71.98 0.60 -3.60 16 14 C 0.12 3.25 6.01 86.36 0.52 3.77 16 15 C 0.14 3.49 2.07 45.07 0.09 3.58 16 16 H 0.05 1.65 7.58 -2.39 -0.02 1.63 16 17 N -0.71 -18.38 4.37 -442.15 -1.93 -20.31 16 18 C 0.51 20.17 7.80 87.66 0.68 20.85 16 19 O -0.59 -30.70 15.64 -3.04 -0.05 -30.75 16 20 C -0.12 -4.74 5.64 29.85 0.17 -4.57 16 21 C 0.04 2.37 4.26 29.85 0.13 2.49 16 22 C -0.54 -31.35 9.11 25.60 0.23 -31.11 16 23 H 0.08 4.11 7.74 -2.91 -0.02 4.09 16 24 C -0.01 -0.63 5.46 84.66 0.46 -0.16 16 25 N -0.94 -61.42 13.29 21.45 0.28 -61.14 16 26 Si 0.98 45.08 29.54 68.60 2.03 47.11 16 27 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 28 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 29 H -0.25 -10.69 7.11 99.48 0.71 -9.99 16 30 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.06 0.85 7.36 -2.38 -0.02 0.84 16 33 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 35 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.10 1.24 6.93 -2.39 -0.02 1.22 16 37 H 0.07 1.23 8.14 -2.39 -0.02 1.22 16 38 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.05 1.49 5.88 -2.39 -0.01 1.48 16 40 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.05 1.56 5.88 -2.38 -0.01 1.55 16 44 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.05 1.96 7.00 -2.39 -0.02 1.95 16 47 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 48 H 0.42 7.23 8.31 -92.71 -0.77 6.46 16 49 H 0.11 3.74 8.14 -2.39 -0.02 3.72 16 50 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 51 H -0.02 -1.34 8.10 -2.39 -0.02 -1.36 16 52 H -0.02 -1.50 8.10 -2.39 -0.02 -1.52 16 53 H 0.26 16.03 8.31 -92.71 -0.77 15.26 16 Total: -1.00 -89.97 416.31 3.84 -86.13 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: 0.11 Total: 19.50 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: 6.47 Total: 7.95 kcal Atomic # 7 Polarization: -93.87 SS G_CDS: -4.47 Total: -98.33 kcal Atomic # 8 Polarization: -62.05 SS G_CDS: -0.30 Total: -62.35 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -89.97 3.84 -86.13 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496398446.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.708 kcal (2) G-P(sol) polarization free energy of solvation -89.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds