Wall clock time and date at job start Wed Apr 1 2020 00:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.49928 * 2 1 4 4 C 1.53192 * 109.49831 * 239.93190 * 2 1 3 5 5 N 1.46927 * 108.77419 * 185.37947 * 4 2 1 6 6 C 1.34777 * 120.62966 * 233.58380 * 5 4 2 7 7 O 1.21274 * 120.00145 * 0.02562 * 6 5 4 8 8 C 1.50696 * 119.99735 * 180.02562 * 6 5 4 9 9 C 1.52998 * 109.46973 * 180.02562 * 8 6 5 10 10 C 1.50706 * 109.47348 * 180.02562 * 9 8 6 11 11 H 1.08005 * 119.99758 * 359.97438 * 10 9 8 12 12 C 1.37871 * 120.00102 * 179.97438 * 10 9 8 13 13 N 1.31516 * 120.00217 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99766 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47057 * 179.97438 * 14 12 10 16 16 H 1.48500 * 109.47389 * 300.00068 * 14 12 10 17 17 H 1.48504 * 109.47102 * 60.00417 * 14 12 10 18 18 C 1.46922 * 118.73621 * 53.86712 * 5 4 2 19 19 C 1.53629 * 108.54335 * 306.08668 * 18 5 4 20 20 C 1.53044 * 109.23737 * 54.86124 * 19 18 5 21 21 H 1.08998 * 109.46325 * 58.52941 * 20 19 18 22 22 N 1.46499 * 109.44482 * 178.49888 * 20 19 18 23 23 C 1.34779 * 120.00011 * 275.05787 * 22 20 19 24 24 O 1.21511 * 119.99753 * 0.02562 * 23 22 20 25 25 O 1.34633 * 120.00293 * 180.02562 * 23 22 20 26 26 C 1.45198 * 117.00064 * 180.02562 * 25 23 22 27 27 C 1.52992 * 109.47386 * 59.99644 * 26 25 23 28 28 C 1.53001 * 109.47088 * 179.97438 * 26 25 23 29 29 C 1.53003 * 109.47109 * 299.99478 * 26 25 23 30 30 H 1.08999 * 109.47189 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47489 * 300.06702 * 1 2 3 32 32 H 1.09000 * 109.47114 * 60.06483 * 1 2 3 33 33 H 1.09002 * 109.58112 * 65.59310 * 4 2 1 34 34 H 1.09000 * 109.58855 * 305.17416 * 4 2 1 35 35 H 1.09000 * 109.47333 * 60.00571 * 8 6 5 36 36 H 1.09002 * 109.47152 * 300.00044 * 8 6 5 37 37 H 1.09001 * 109.47671 * 60.00215 * 9 8 6 38 38 H 1.09006 * 109.47297 * 299.99934 * 9 8 6 39 39 H 0.97001 * 119.99646 * 359.97438 * 13 12 10 40 40 H 1.08998 * 109.58902 * 65.92698 * 18 5 4 41 41 H 1.09003 * 109.58673 * 186.34728 * 18 5 4 42 42 H 1.08992 * 109.63384 * 294.86996 * 19 18 5 43 43 H 1.09001 * 109.45497 * 174.74363 * 19 18 5 44 44 H 0.96998 * 119.99985 * 95.05995 * 22 20 19 45 45 H 1.09000 * 109.47483 * 60.00135 * 27 26 25 46 46 H 1.09007 * 109.47330 * 180.02562 * 27 26 25 47 47 H 1.09000 * 109.47558 * 299.99786 * 27 26 25 48 48 H 1.08994 * 109.47173 * 59.99696 * 28 26 25 49 49 H 1.08997 * 109.46993 * 179.97438 * 28 26 25 50 50 H 1.09000 * 109.46795 * 299.99261 * 28 26 25 51 51 H 1.09001 * 109.47110 * 59.99989 * 29 26 25 52 52 H 1.08997 * 109.47551 * 180.02562 * 29 26 25 53 53 H 1.09006 * 109.47219 * 300.00763 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7235 -1.2497 5 7 3.5047 -0.8281 -1.1701 6 6 4.2807 -0.3850 -2.1790 7 8 3.7722 0.1061 -3.1645 8 6 5.7802 -0.4999 -2.0826 9 6 6.4180 0.0729 -3.3499 10 6 7.9176 -0.0425 -3.2538 11 1 8.3704 -0.4802 -2.3763 12 6 8.7114 0.4107 -4.2859 13 7 8.1601 0.9441 -5.3542 14 14 10.5701 0.2683 -4.1664 15 1 11.1892 0.8230 -5.3970 16 1 11.0499 1.0285 -2.9844 17 1 10.9489 -1.1605 -4.0232 18 6 4.1056 -1.4306 0.0276 19 6 3.5714 -0.6942 1.2655 20 6 2.0414 -0.7230 1.2482 21 1 1.6977 -1.7573 1.2351 22 7 1.5274 -0.0529 2.4453 23 6 1.4000 -0.7382 3.5988 24 8 1.7118 -1.9117 3.6460 25 8 0.9271 -0.1227 4.6989 26 6 0.8172 -0.9223 5.9059 27 6 2.1987 -1.4531 6.2936 28 6 0.2663 -0.0579 7.0418 29 6 -0.1288 -2.0982 5.6543 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5149 0.8894 32 1 -0.3633 0.5128 -0.8906 33 1 1.7632 -0.1577 -2.1389 34 1 1.6056 -1.7215 -1.2982 35 1 6.0583 -1.5485 -1.9776 36 1 6.1322 0.0581 -1.2150 37 1 6.1400 1.1216 -3.4546 38 1 6.0660 -0.4847 -4.2178 39 1 7.1949 1.0184 -5.4160 40 1 3.8350 -2.4851 0.0812 41 1 5.1902 -1.3316 -0.0185 42 1 3.9160 0.3398 1.2535 43 1 3.9345 -1.1883 2.1667 44 1 1.2788 0.8839 2.4077 45 1 2.8727 -0.6154 6.4729 46 1 2.1162 -2.0537 7.1995 47 1 2.5917 -2.0688 5.4845 48 1 -0.7178 0.3206 6.7659 49 1 0.1834 -0.6583 7.9477 50 1 0.9406 0.7795 7.2210 51 1 0.2641 -2.7138 4.8451 52 1 -0.2117 -2.6982 6.5604 53 1 -1.1131 -1.7200 5.3780 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496642011.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:29:11 Heat of formation + Delta-G solvation = -165.211049 kcal Electronic energy + Delta-G solvation = -30747.440438 eV Core-core repulsion = 26617.314090 eV Total energy + Delta-G solvation = -4130.126347 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.97802 -41.27932 -39.49150 -37.85901 -35.98501 -35.95201 -35.02925 -34.00803 -32.71343 -31.99731 -28.39710 -28.33157 -28.27360 -27.12037 -26.04971 -23.96664 -23.61164 -22.94946 -21.65745 -20.90663 -20.01729 -19.15840 -19.04363 -18.03132 -17.56768 -17.21602 -16.99656 -16.71799 -16.50248 -15.75484 -15.61307 -15.43726 -15.36562 -15.13009 -15.01053 -14.67370 -14.44395 -14.16263 -13.89779 -13.77862 -13.62509 -13.31817 -13.23213 -13.14316 -13.00760 -12.87595 -12.83766 -12.66822 -12.61268 -12.54747 -12.28612 -12.19325 -12.06697 -12.02477 -11.98591 -11.82917 -11.55923 -11.35597 -11.08998 -10.95210 -10.64817 -10.54981 -10.20416 -9.75962 -8.69098 -6.40923 1.14326 1.54377 1.57853 1.64396 1.78478 1.82768 1.93236 2.59865 3.11094 3.17065 3.41446 3.63254 3.72865 3.77749 3.82382 3.82931 3.97439 3.98783 4.18621 4.23422 4.31188 4.33780 4.37020 4.53023 4.57649 4.62480 4.64342 4.64766 4.74835 4.77355 4.79413 4.81349 4.87264 4.90524 4.91827 4.98949 5.03906 5.08538 5.17385 5.24823 5.27614 5.31034 5.31414 5.36449 5.40633 5.53703 5.59784 5.93543 6.15896 6.29369 6.40983 6.51691 7.14643 7.35929 7.44871 8.70670 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017868 B = 0.002111 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.647699 B =13262.621272 C =14369.004863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.101 4.101 3 H 0.078 0.922 4 C 0.115 3.885 5 N -0.612 5.612 6 C 0.513 3.487 7 O -0.588 6.588 8 C -0.111 4.111 9 C 0.028 3.972 10 C -0.618 4.618 11 H 0.067 0.933 12 C -0.046 4.046 13 N -0.939 5.939 14 Si 1.124 2.876 15 H -0.288 1.288 16 H -0.264 1.264 17 H -0.264 1.264 18 C 0.107 3.893 19 C -0.139 4.139 20 C 0.177 3.823 21 H 0.090 0.910 22 N -0.695 5.695 23 C 0.648 3.352 24 O -0.588 6.588 25 O -0.370 6.370 26 C 0.126 3.874 27 C -0.180 4.180 28 C -0.137 4.137 29 C -0.179 4.179 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.101 0.899 36 H 0.101 0.899 37 H -0.021 1.021 38 H -0.021 1.021 39 H 0.251 0.749 40 H 0.090 0.910 41 H 0.098 0.902 42 H 0.070 0.930 43 H 0.084 0.916 44 H 0.414 0.586 45 H 0.059 0.941 46 H 0.088 0.912 47 H 0.064 0.936 48 H 0.069 0.931 49 H 0.100 0.900 50 H 0.067 0.933 51 H 0.063 0.937 52 H 0.088 0.912 53 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.331 -4.912 28.535 34.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.121 4.121 3 H 0.097 0.903 4 C -0.007 4.007 5 N -0.345 5.345 6 C 0.304 3.696 7 O -0.468 6.468 8 C -0.151 4.151 9 C -0.010 4.010 10 C -0.656 4.656 11 H 0.085 0.915 12 C -0.243 4.243 13 N -0.576 5.576 14 Si 0.944 3.056 15 H -0.214 1.214 16 H -0.189 1.189 17 H -0.189 1.189 18 C -0.016 4.016 19 C -0.179 4.179 20 C 0.073 3.927 21 H 0.108 0.892 22 N -0.354 5.354 23 C 0.402 3.598 24 O -0.479 6.479 25 O -0.285 6.285 26 C 0.090 3.910 27 C -0.237 4.237 28 C -0.194 4.194 29 C -0.236 4.236 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.120 0.880 36 H 0.119 0.881 37 H -0.003 1.003 38 H -0.003 1.003 39 H 0.060 0.940 40 H 0.108 0.892 41 H 0.116 0.884 42 H 0.088 0.912 43 H 0.103 0.897 44 H 0.251 0.749 45 H 0.078 0.922 46 H 0.107 0.893 47 H 0.083 0.917 48 H 0.088 0.912 49 H 0.119 0.881 50 H 0.086 0.914 51 H 0.082 0.918 52 H 0.106 0.894 53 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -18.097 -4.934 27.357 33.171 hybrid contribution -1.657 0.238 0.192 1.685 sum -19.754 -4.696 27.549 34.223 Atomic orbital electron populations 1.21737 0.92143 1.02950 1.02933 1.21679 0.97786 1.00041 0.92561 0.90327 1.21699 0.78960 1.01650 0.98411 1.48255 1.06910 1.60774 1.18555 1.21262 0.90515 0.76011 0.81850 1.90631 1.76362 1.46571 1.33219 1.21520 0.89188 1.03679 1.00696 1.18863 0.95382 0.93784 0.92971 1.22490 0.92254 1.44187 1.06630 0.91500 1.27667 1.11959 0.92602 0.92071 1.70899 1.12697 1.43715 1.30317 0.82876 0.68307 0.77892 0.76537 1.21364 1.18853 1.18886 1.22015 0.99672 0.97719 0.82161 1.22367 0.95481 1.01901 0.98129 1.20880 0.92786 0.97358 0.81647 0.89161 1.44740 1.68318 1.15153 1.07159 1.18226 0.76565 0.83622 0.81421 1.90903 1.55787 1.16159 1.85030 1.86314 1.78380 1.44721 1.19104 1.22372 0.96599 0.91177 0.80856 1.22474 0.95704 1.02125 1.03443 1.21886 1.01785 1.00119 0.95595 1.22466 0.98877 0.98085 1.04176 0.91839 0.91089 0.91718 0.90516 0.89669 0.88040 0.88052 1.00258 1.00283 0.93954 0.89205 0.88394 0.91157 0.89699 0.74940 0.92174 0.89330 0.91727 0.91182 0.88134 0.91371 0.91757 0.89354 0.91962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.02 71.98 0.65 -1.18 16 2 C -0.10 -1.69 2.46 -10.72 -0.03 -1.72 16 3 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 4 C 0.12 2.65 5.71 86.36 0.49 3.14 16 5 N -0.61 -16.84 2.97 -818.07 -2.43 -19.27 16 6 C 0.51 19.99 7.70 87.66 0.67 20.66 16 7 O -0.59 -28.49 15.39 -3.01 -0.05 -28.54 16 8 C -0.11 -4.55 3.98 29.85 0.12 -4.43 16 9 C 0.03 1.54 3.57 29.85 0.11 1.65 16 10 C -0.62 -35.76 9.11 25.60 0.23 -35.53 16 11 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 12 C -0.05 -2.76 5.46 84.65 0.46 -2.30 16 13 N -0.94 -61.49 13.65 21.45 0.29 -61.19 16 14 Si 1.12 50.54 29.90 68.60 2.05 52.59 16 15 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 16 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 17 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 18 C 0.11 2.20 6.37 86.51 0.55 2.75 16 19 C -0.14 -2.52 5.67 30.82 0.17 -2.34 16 20 C 0.18 2.93 1.88 45.02 0.08 3.02 16 21 H 0.09 1.65 7.58 -2.39 -0.02 1.64 16 22 N -0.69 -10.69 4.37 -569.99 -2.49 -13.19 16 23 C 0.65 12.59 8.02 129.79 1.04 13.63 16 24 O -0.59 -14.04 11.54 19.81 0.23 -13.81 16 25 O -0.37 -6.52 9.94 -55.43 -0.55 -7.08 16 26 C 0.13 1.77 1.13 -10.79 -0.01 1.76 16 27 C -0.18 -2.61 8.37 71.98 0.60 -2.01 16 28 C -0.14 -1.16 8.85 71.98 0.64 -0.53 16 29 C -0.18 -2.47 8.37 71.98 0.60 -1.86 16 30 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.07 0.79 7.37 -2.38 -0.02 0.77 16 32 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.08 2.15 7.01 -2.39 -0.02 2.13 16 34 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.10 3.72 7.93 -2.39 -0.02 3.70 16 36 H 0.10 3.71 7.70 -2.39 -0.02 3.69 16 37 H -0.02 -1.30 7.97 -2.39 -0.02 -1.32 16 38 H -0.02 -1.32 7.97 -2.38 -0.02 -1.34 16 39 H 0.25 17.12 7.22 -92.71 -0.67 16.45 16 40 H 0.09 1.58 8.14 -2.39 -0.02 1.57 16 41 H 0.10 2.04 5.93 -2.39 -0.01 2.02 16 42 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.41 4.92 8.42 -92.71 -0.78 4.14 16 45 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 47 H 0.06 1.28 5.88 -2.39 -0.01 1.27 16 48 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 49 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 50 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 51 H 0.06 1.24 5.88 -2.39 -0.01 1.22 16 52 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 53 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 Total: -1.00 -80.09 413.35 3.66 -76.43 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: 0.21 Total: 19.34 kcal Atomic # 6 Polarization: -11.68 SS G_CDS: 6.39 Total: -5.29 kcal Atomic # 7 Polarization: -89.02 SS G_CDS: -4.63 Total: -93.65 kcal Atomic # 8 Polarization: -49.05 SS G_CDS: -0.37 Total: -49.42 kcal Atomic # 14 Polarization: 50.54 SS G_CDS: 2.05 Total: 52.59 kcal Total: -80.09 3.66 -76.43 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496642011.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.777 kcal (2) G-P(sol) polarization free energy of solvation -80.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds