Wall clock time and date at job start Wed Apr 1 2020 00:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.49370 * 2 1 4 4 C 1.52762 * 109.56744 * 240.03310 * 2 1 3 5 5 N 1.46925 * 109.00888 * 185.54836 * 4 2 1 6 6 C 1.34777 * 120.63098 * 233.58574 * 5 4 2 7 7 O 1.21279 * 119.99739 * 359.71942 * 6 5 4 8 8 C 1.50696 * 119.99732 * 179.72583 * 6 5 4 9 9 C 1.52998 * 109.46969 * 179.97438 * 8 6 5 10 10 C 1.50706 * 109.47348 * 179.97438 * 9 8 6 11 11 H 1.08000 * 119.99302 * 359.97438 * 10 9 8 12 12 C 1.37871 * 120.00436 * 179.72505 * 10 9 8 13 13 N 1.31515 * 119.99684 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00405 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47050 * 59.99579 * 14 12 10 16 16 H 1.48496 * 109.47289 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.46492 * 299.99554 * 14 12 10 18 18 C 1.46926 * 118.73494 * 53.31261 * 5 4 2 19 19 C 1.53193 * 108.77525 * 306.63811 * 18 5 4 20 20 C 1.53039 * 109.49873 * 120.06326 * 2 1 3 21 21 H 1.08995 * 109.46227 * 301.34266 * 20 2 1 22 22 N 1.46503 * 109.44388 * 61.30578 * 20 2 1 23 23 C 1.34773 * 119.99966 * 205.05736 * 22 20 2 24 24 O 1.21511 * 119.99758 * 0.02562 * 23 22 20 25 25 O 1.34641 * 120.00430 * 180.02562 * 23 22 20 26 26 C 1.45191 * 117.00119 * 180.02562 * 25 23 22 27 27 C 1.52997 * 109.47712 * 59.99759 * 26 25 23 28 28 C 1.52999 * 109.47038 * 180.02562 * 26 25 23 29 29 C 1.53008 * 109.47184 * 299.99606 * 26 25 23 30 30 H 1.08996 * 109.47247 * 299.93500 * 1 2 3 31 31 H 1.09000 * 109.47029 * 59.93487 * 1 2 3 32 32 H 1.09001 * 109.46758 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.50454 * 65.66834 * 4 2 1 34 34 H 1.08994 * 109.43090 * 305.39227 * 4 2 1 35 35 H 1.09000 * 109.47664 * 59.99795 * 8 6 5 36 36 H 1.09002 * 109.46824 * 299.99265 * 8 6 5 37 37 H 1.09001 * 109.47671 * 59.99812 * 9 8 6 38 38 H 1.08998 * 109.47454 * 299.99809 * 9 8 6 39 39 H 0.97004 * 120.00247 * 180.02562 * 13 12 10 40 40 H 1.08995 * 109.59068 * 66.42621 * 18 5 4 41 41 H 1.08997 * 109.58580 * 186.85459 * 18 5 4 42 42 H 1.08997 * 109.49868 * 174.58497 * 19 18 5 43 43 H 1.08999 * 109.49841 * 294.68890 * 19 18 5 44 44 H 0.96999 * 120.00032 * 25.06619 * 22 20 2 45 45 H 1.09006 * 109.46559 * 59.99929 * 27 26 25 46 46 H 1.08999 * 109.47643 * 179.97438 * 27 26 25 47 47 H 1.09000 * 109.47163 * 300.00404 * 27 26 25 48 48 H 1.09006 * 109.47109 * 59.99820 * 28 26 25 49 49 H 1.08999 * 109.47323 * 179.97438 * 28 26 25 50 50 H 1.08993 * 109.47372 * 299.99739 * 28 26 25 51 51 H 1.09000 * 109.46616 * 60.00255 * 29 26 25 52 52 H 1.08998 * 109.46952 * 179.97438 * 29 26 25 53 53 H 1.08993 * 109.47192 * 300.00671 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0416 -0.7190 -1.2470 5 7 3.5047 -0.8293 -1.1694 6 6 4.2812 -0.3859 -2.1778 7 8 3.7732 0.1052 -3.1635 8 6 5.7807 -0.5005 -2.0805 9 6 6.4191 0.0714 -3.3478 10 6 7.9187 -0.0426 -3.2504 11 1 8.3710 -0.4789 -2.3721 12 6 8.7128 0.4054 -4.2845 13 7 8.1617 0.9318 -5.3563 14 14 10.5715 0.2635 -4.1640 15 1 10.9502 -1.1645 -4.0135 16 1 11.1909 0.8120 -5.3971 17 1 11.0510 1.0296 -2.9857 18 6 4.1053 -1.4266 0.0311 19 6 3.5709 -0.6946 1.2662 20 6 2.0408 -0.7227 1.2485 21 1 1.6582 -0.2239 2.1389 22 7 1.5784 -2.1127 1.2310 23 6 1.4490 -2.7945 2.3863 24 8 1.7155 -2.2561 3.4425 25 8 1.0245 -4.0721 2.3702 26 6 0.9082 -4.7443 3.6519 27 6 -0.0890 -3.9909 4.5344 28 6 0.4164 -6.1766 3.4338 29 6 2.2755 -4.7741 4.3381 30 1 -0.3633 0.5128 0.8905 31 1 -0.3633 0.5148 -0.8894 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7646 -0.1500 -2.1345 34 1 1.6022 -1.7151 -1.2971 35 1 6.0589 -1.5491 -1.9753 36 1 6.1321 0.0576 -1.2126 37 1 6.1410 1.1200 -3.4535 38 1 6.0676 -0.4869 -4.2155 39 1 8.7204 1.2466 -6.0842 40 1 3.8376 -2.4816 0.0874 41 1 5.1896 -1.3244 -0.0134 42 1 3.9334 -1.1890 2.1674 43 1 3.9159 0.3393 1.2540 44 1 1.3654 -2.5424 0.3878 45 1 -1.0630 -3.9698 4.0456 46 1 -0.1766 -4.4958 5.4965 47 1 0.2618 -2.9707 4.6897 48 1 1.1272 -6.7131 2.8053 49 1 0.3295 -6.6814 4.3959 50 1 -0.5575 -6.1559 2.9448 51 1 2.6263 -3.7538 4.4934 52 1 2.1881 -5.2783 5.3004 53 1 2.9859 -5.3108 3.7094 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496642012.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:29:15 Heat of formation + Delta-G solvation = -156.896512 kcal Electronic energy + Delta-G solvation = -31142.878775 eV Core-core repulsion = 27013.112973 eV Total energy + Delta-G solvation = -4129.765802 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.05566 -41.20081 -39.51049 -37.74188 -35.66492 -35.59321 -34.99285 -33.92096 -32.84231 -32.00614 -28.57701 -28.30479 -28.25251 -27.28433 -26.22493 -24.11168 -23.44750 -23.05554 -21.11078 -20.83999 -19.67659 -19.32278 -18.80836 -17.65196 -17.52396 -17.19035 -16.87032 -16.75124 -16.42737 -16.10985 -15.86511 -15.44420 -15.10285 -15.00422 -14.90072 -14.57493 -14.39647 -14.20359 -14.05019 -13.74757 -13.31360 -13.29626 -13.13335 -13.02786 -12.86530 -12.84771 -12.80363 -12.78092 -12.62000 -12.50726 -12.46049 -12.24317 -12.04396 -11.99426 -11.91679 -11.59453 -11.53487 -11.32448 -11.31587 -11.03981 -10.66912 -10.55676 -10.19496 -9.62729 -8.17517 -6.31583 1.21088 1.42079 1.46477 1.54151 1.67693 1.83279 2.00759 2.43336 3.15263 3.17607 3.46800 3.71091 3.77927 3.80364 3.85648 3.87432 4.00110 4.01116 4.18987 4.30150 4.41169 4.46313 4.52093 4.56241 4.60189 4.66699 4.69510 4.71685 4.78546 4.81955 4.84078 4.89524 4.91890 4.92836 5.00416 5.07045 5.09271 5.14611 5.16897 5.28408 5.33629 5.35053 5.44607 5.48288 5.61518 5.62918 5.63383 5.85301 6.17795 6.35451 6.44062 6.86486 7.25611 7.38598 7.39584 8.94848 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016253 B = 0.002305 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.303743 B =12143.269599 C =13197.297344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.103 4.103 3 H 0.088 0.912 4 C 0.110 3.890 5 N -0.610 5.610 6 C 0.513 3.487 7 O -0.586 6.586 8 C -0.117 4.117 9 C 0.044 3.956 10 C -0.543 4.543 11 H 0.075 0.925 12 C -0.007 4.007 13 N -0.937 5.937 14 Si 0.973 3.027 15 H -0.263 1.263 16 H -0.288 1.288 17 H -0.262 1.262 18 C 0.106 3.894 19 C -0.143 4.143 20 C 0.177 3.823 21 H 0.095 0.905 22 N -0.694 5.694 23 C 0.650 3.350 24 O -0.588 6.588 25 O -0.372 6.372 26 C 0.127 3.873 27 C -0.178 4.178 28 C -0.138 4.138 29 C -0.180 4.180 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.100 0.900 36 H 0.101 0.899 37 H -0.018 1.018 38 H -0.018 1.018 39 H 0.263 0.737 40 H 0.079 0.921 41 H 0.095 0.905 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.410 0.590 45 H 0.061 0.939 46 H 0.087 0.913 47 H 0.064 0.936 48 H 0.066 0.934 49 H 0.100 0.900 50 H 0.069 0.931 51 H 0.065 0.935 52 H 0.087 0.913 53 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.907 -12.693 23.106 32.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.122 4.122 3 H 0.107 0.893 4 C -0.012 4.012 5 N -0.344 5.344 6 C 0.304 3.696 7 O -0.466 6.466 8 C -0.157 4.157 9 C 0.006 3.994 10 C -0.581 4.581 11 H 0.093 0.907 12 C -0.204 4.204 13 N -0.577 5.577 14 Si 0.796 3.204 15 H -0.187 1.187 16 H -0.213 1.213 17 H -0.187 1.187 18 C -0.016 4.016 19 C -0.182 4.182 20 C 0.074 3.926 21 H 0.113 0.887 22 N -0.354 5.354 23 C 0.403 3.597 24 O -0.479 6.479 25 O -0.286 6.286 26 C 0.090 3.910 27 C -0.235 4.235 28 C -0.195 4.195 29 C -0.237 4.237 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.000 1.000 38 H 0.000 1.000 39 H 0.071 0.929 40 H 0.097 0.903 41 H 0.113 0.887 42 H 0.104 0.896 43 H 0.102 0.898 44 H 0.247 0.753 45 H 0.080 0.920 46 H 0.106 0.894 47 H 0.083 0.917 48 H 0.085 0.915 49 H 0.118 0.882 50 H 0.088 0.912 51 H 0.084 0.916 52 H 0.106 0.894 53 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.035 -12.182 22.997 32.243 hybrid contribution 0.828 0.172 -0.915 1.246 sum -18.207 -12.010 22.082 31.038 Atomic orbital electron populations 1.21726 0.92237 1.02874 1.02878 1.21650 0.97749 1.00104 0.92747 0.89322 1.21616 0.79294 1.01321 0.98987 1.48206 1.06714 1.61051 1.18382 1.21305 0.90594 0.75925 0.81789 1.90643 1.76368 1.46394 1.33204 1.21635 0.89168 1.03626 1.01224 1.18677 0.94501 0.94149 0.92039 1.21671 0.92235 1.40403 1.03801 0.90699 1.26127 1.04746 0.94686 0.94847 1.70170 1.37612 1.42020 1.07869 0.85390 0.78250 0.79090 0.77620 1.18718 1.21341 1.18696 1.21872 0.99546 0.97380 0.82788 1.22314 0.95469 1.02490 0.97941 1.20887 0.93440 0.79286 0.99028 0.88706 1.44836 1.70088 1.13474 1.07014 1.18199 0.76351 0.80620 0.84507 1.90896 1.56287 1.70259 1.30436 1.86319 1.80005 1.24465 1.37854 1.22354 0.96551 0.92705 0.79347 1.22459 0.98453 1.02119 1.00500 1.21888 1.02115 0.91198 1.04254 1.22473 0.95768 1.03772 1.01704 0.91373 0.91781 0.91695 0.90745 0.90043 0.88189 0.88042 0.99963 0.99996 0.92862 0.90254 0.88678 0.89620 0.89808 0.75282 0.92017 0.89407 0.91658 0.91466 0.88162 0.91244 0.91597 0.89412 0.92197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.05 71.98 0.65 -1.19 16 2 C -0.10 -1.72 2.66 -10.86 -0.03 -1.74 16 3 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 4 C 0.11 2.43 5.39 86.22 0.47 2.89 16 5 N -0.61 -16.41 2.98 -819.75 -2.44 -18.85 16 6 C 0.51 19.86 7.70 87.66 0.67 20.53 16 7 O -0.59 -28.53 15.40 -3.03 -0.05 -28.58 16 8 C -0.12 -4.73 3.99 29.85 0.12 -4.61 16 9 C 0.04 2.46 4.26 29.85 0.13 2.59 16 10 C -0.54 -30.99 9.11 25.60 0.23 -30.76 16 11 H 0.07 3.88 7.74 -2.91 -0.02 3.86 16 12 C -0.01 -0.38 5.46 84.65 0.46 0.08 16 13 N -0.94 -59.60 13.29 21.45 0.28 -59.32 16 14 Si 0.97 44.36 29.54 68.60 2.03 46.39 16 15 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 16 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 17 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 18 C 0.11 2.16 6.09 86.36 0.53 2.69 16 19 C -0.14 -2.52 5.77 30.67 0.18 -2.34 16 20 C 0.18 2.88 2.21 45.02 0.10 2.98 16 21 H 0.09 1.64 7.57 -2.39 -0.02 1.63 16 22 N -0.69 -10.92 3.60 -570.00 -2.05 -12.98 16 23 C 0.65 12.67 8.02 129.79 1.04 13.71 16 24 O -0.59 -13.90 11.54 19.81 0.23 -13.67 16 25 O -0.37 -6.75 9.94 -55.50 -0.55 -7.30 16 26 C 0.13 1.84 1.13 -10.79 -0.01 1.83 16 27 C -0.18 -2.50 8.37 71.98 0.60 -1.89 16 28 C -0.14 -1.29 8.85 71.98 0.64 -0.65 16 29 C -0.18 -2.67 8.37 71.98 0.60 -2.07 16 30 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.06 0.86 8.14 -2.39 -0.02 0.85 16 32 H 0.06 0.77 7.54 -2.39 -0.02 0.75 16 33 H 0.07 2.06 7.01 -2.38 -0.02 2.05 16 34 H 0.08 1.43 6.64 -2.39 -0.02 1.42 16 35 H 0.10 3.60 7.94 -2.39 -0.02 3.58 16 36 H 0.10 3.63 7.69 -2.39 -0.02 3.61 16 37 H -0.02 -1.14 8.10 -2.39 -0.02 -1.16 16 38 H -0.02 -1.17 8.10 -2.39 -0.02 -1.19 16 39 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 40 H 0.08 1.43 7.74 -2.39 -0.02 1.42 16 41 H 0.09 1.97 5.93 -2.39 -0.01 1.96 16 42 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.41 5.61 6.85 -92.71 -0.63 4.97 16 45 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 46 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.06 1.25 5.88 -2.39 -0.01 1.24 16 48 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 49 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 50 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 51 H 0.07 1.31 5.88 -2.39 -0.01 1.30 16 52 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 53 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -78.03 410.66 4.08 -73.95 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: 0.25 Total: 18.30 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: 6.38 Total: 2.05 kcal Atomic # 7 Polarization: -86.93 SS G_CDS: -4.21 Total: -91.14 kcal Atomic # 8 Polarization: -49.18 SS G_CDS: -0.37 Total: -49.55 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -78.03 4.08 -73.95 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496642012.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.943 kcal (2) G-P(sol) polarization free energy of solvation -78.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds