Wall clock time and date at job start Wed Apr 1 2020 00:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.49843 * 2 1 4 4 C 1.53619 * 109.43461 * 120.22418 * 2 1 3 5 5 N 1.46921 * 108.54656 * 174.72388 * 4 2 1 6 6 C 1.34770 * 120.63381 * 126.37040 * 5 4 2 7 7 O 1.21283 * 120.00059 * 359.72030 * 6 5 4 8 8 C 1.50697 * 120.00483 * 179.71918 * 6 5 4 9 9 C 1.52996 * 109.47491 * 179.97438 * 8 6 5 10 10 C 1.50702 * 109.47159 * 179.97438 * 9 8 6 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 9 8 12 12 C 1.37884 * 119.99942 * 179.72211 * 10 9 8 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 9 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 9 15 15 H 1.48504 * 109.47196 * 60.00645 * 14 12 10 16 16 H 1.48504 * 109.46887 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47679 * 300.00280 * 14 12 10 18 18 C 1.46933 * 118.73840 * 306.09404 * 5 4 2 19 19 C 1.53194 * 108.77263 * 53.85804 * 18 5 4 20 20 C 1.53038 * 109.31461 * 305.36676 * 19 18 5 21 21 H 1.08995 * 109.46110 * 181.38827 * 20 19 18 22 22 N 1.46502 * 109.45899 * 301.34367 * 20 19 18 23 23 C 1.34771 * 120.00162 * 275.00045 * 22 20 19 24 24 O 1.21512 * 120.00197 * 0.02562 * 23 22 20 25 25 O 1.34642 * 120.00073 * 179.97438 * 23 22 20 26 26 C 1.45196 * 117.00220 * 179.97438 * 25 23 22 27 27 C 1.53001 * 109.46879 * 60.00160 * 26 25 23 28 28 C 1.53001 * 109.47431 * 180.02562 * 26 25 23 29 29 C 1.52998 * 109.47456 * 300.00629 * 26 25 23 30 30 H 1.09000 * 109.47097 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47214 * 300.06814 * 1 2 3 32 32 H 1.09001 * 109.46996 * 60.06198 * 1 2 3 33 33 H 1.09004 * 109.73746 * 54.98140 * 4 2 1 34 34 H 1.09006 * 109.66373 * 294.41760 * 4 2 1 35 35 H 1.09004 * 109.46801 * 59.99704 * 8 6 5 36 36 H 1.09000 * 109.47461 * 300.00236 * 8 6 5 37 37 H 1.09004 * 109.47066 * 60.00201 * 9 8 6 38 38 H 1.08994 * 109.47405 * 300.00031 * 9 8 6 39 39 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 40 40 H 1.08997 * 109.58788 * 173.64812 * 18 5 4 41 41 H 1.09002 * 109.58164 * 293.93266 * 18 5 4 42 42 H 1.08999 * 109.49360 * 65.31931 * 19 18 5 43 43 H 1.08997 * 109.49451 * 185.41274 * 19 18 5 44 44 H 0.97007 * 119.99743 * 95.00172 * 22 20 19 45 45 H 1.08999 * 109.46891 * 60.00038 * 27 26 25 46 46 H 1.08998 * 109.47290 * 179.97438 * 27 26 25 47 47 H 1.09004 * 109.47244 * 300.00444 * 27 26 25 48 48 H 1.09002 * 109.46801 * 60.00113 * 28 26 25 49 49 H 1.08998 * 109.47476 * 180.02562 * 28 26 25 50 50 H 1.08999 * 109.47040 * 300.00392 * 28 26 25 51 51 H 1.09000 * 109.47400 * 59.99349 * 29 26 25 52 52 H 1.09003 * 109.47330 * 180.02562 * 29 26 25 53 53 H 1.09002 * 109.46899 * 299.99962 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0411 -0.7292 1.2517 5 7 3.5046 -0.8294 1.1693 6 6 4.2811 -0.3871 2.1780 7 8 3.7732 0.1040 3.1639 8 6 5.7805 -0.5026 2.0813 9 6 6.4191 0.0694 3.3485 10 6 7.9185 -0.0467 3.2519 11 1 8.3708 -0.4844 2.3742 12 6 8.7132 0.4115 4.2813 13 7 8.1624 0.9447 5.3499 14 14 10.5720 0.2745 4.1582 15 1 11.0469 1.0334 2.9734 16 1 11.1920 0.8341 5.3862 17 1 10.9551 -1.1534 4.0176 18 6 4.1053 -1.4267 -0.0313 19 6 3.5708 -0.6947 -1.2663 20 6 2.0408 -0.7227 -1.2486 21 1 1.6581 -0.2239 -2.1390 22 7 1.5783 -2.1127 -1.2315 23 6 1.4488 -2.7941 -2.3870 24 8 1.7161 -2.2558 -3.4430 25 8 1.0242 -4.0718 -2.3712 26 6 0.9078 -4.7437 -3.6530 27 6 2.2750 -4.7732 -4.3393 28 6 0.4148 -6.1756 -3.4355 29 6 -0.0893 -3.9900 -4.5353 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5149 0.8894 32 1 -0.3633 0.5129 -0.8905 33 1 1.6084 -1.7286 1.2980 34 1 1.7630 -0.1668 2.1431 35 1 6.1327 0.0555 1.2137 36 1 6.0581 -1.5514 1.9757 37 1 6.0670 -0.4883 4.2163 38 1 6.1416 1.1182 3.4536 39 1 8.7214 1.2667 6.0743 40 1 5.1896 -1.3247 0.0132 41 1 3.8395 -2.4824 -0.0861 42 1 3.9159 0.3392 -1.2540 43 1 3.9333 -1.1891 -2.1675 44 1 1.3652 -2.5426 -0.3883 45 1 2.9854 -5.3102 -3.7108 46 1 2.1878 -5.2780 -5.3014 47 1 2.6259 -3.7529 -4.4943 48 1 -0.5593 -6.1541 -2.9467 49 1 0.3278 -6.6802 -4.3977 50 1 1.1249 -6.7128 -2.8068 51 1 0.2615 -2.9697 -4.6904 52 1 -0.1771 -4.4946 -5.4975 53 1 -1.0633 -3.9688 -4.0464 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496642013.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:29:19 Heat of formation + Delta-G solvation = -156.882901 kcal Electronic energy + Delta-G solvation = -31141.185470 eV Core-core repulsion = 27011.420259 eV Total energy + Delta-G solvation = -4129.765212 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.04639 -41.19165 -39.50017 -37.73411 -35.66352 -35.59281 -34.98937 -33.89024 -32.83929 -32.00758 -28.57423 -28.30465 -28.25216 -27.28022 -26.21492 -24.10936 -23.43807 -23.05939 -21.10865 -20.83862 -19.67817 -19.31942 -18.80804 -17.65039 -17.52515 -17.18912 -16.86390 -16.75080 -16.42591 -16.11070 -15.85688 -15.44421 -15.09833 -15.00193 -14.89177 -14.57148 -14.39511 -14.20288 -14.05122 -13.75027 -13.31350 -13.29611 -13.13253 -13.02707 -12.86232 -12.84384 -12.80236 -12.78054 -12.61926 -12.50585 -12.45777 -12.24236 -12.03838 -12.00178 -11.91634 -11.59499 -11.53613 -11.32429 -11.31613 -11.03930 -10.66745 -10.55677 -10.19454 -9.62358 -8.17579 -6.31579 1.21138 1.42074 1.46449 1.54126 1.67819 1.83339 2.01043 2.43328 3.15212 3.17652 3.46771 3.71242 3.77204 3.80407 3.85639 3.87522 4.00127 4.01351 4.18470 4.29867 4.41388 4.46247 4.52093 4.56346 4.60298 4.66716 4.69534 4.71644 4.78703 4.81977 4.84138 4.89604 4.91947 4.92817 5.00096 5.07094 5.09473 5.14588 5.16918 5.28450 5.33634 5.35153 5.44696 5.48282 5.61592 5.62949 5.63421 5.85287 6.17798 6.35522 6.44128 6.86489 7.25718 7.38546 7.39641 8.94790 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016265 B = 0.002305 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.067127 B =12145.585701 C =13197.724857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.102 4.102 3 H 0.089 0.911 4 C 0.110 3.890 5 N -0.610 5.610 6 C 0.513 3.487 7 O -0.586 6.586 8 C -0.117 4.117 9 C 0.044 3.956 10 C -0.543 4.543 11 H 0.075 0.925 12 C -0.007 4.007 13 N -0.937 5.937 14 Si 0.973 3.027 15 H -0.262 1.262 16 H -0.288 1.288 17 H -0.263 1.263 18 C 0.106 3.894 19 C -0.143 4.143 20 C 0.177 3.823 21 H 0.095 0.905 22 N -0.694 5.694 23 C 0.650 3.350 24 O -0.588 6.588 25 O -0.372 6.372 26 C 0.127 3.873 27 C -0.180 4.180 28 C -0.138 4.138 29 C -0.178 4.178 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.101 0.899 36 H 0.100 0.900 37 H -0.019 1.019 38 H -0.018 1.018 39 H 0.263 0.737 40 H 0.095 0.905 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.410 0.590 45 H 0.059 0.941 46 H 0.087 0.913 47 H 0.065 0.935 48 H 0.069 0.931 49 H 0.100 0.900 50 H 0.066 0.934 51 H 0.064 0.936 52 H 0.087 0.913 53 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.914 -12.728 -23.089 32.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.122 4.122 3 H 0.107 0.893 4 C -0.012 4.012 5 N -0.344 5.344 6 C 0.304 3.696 7 O -0.466 6.466 8 C -0.157 4.157 9 C 0.006 3.994 10 C -0.581 4.581 11 H 0.093 0.907 12 C -0.204 4.204 13 N -0.577 5.577 14 Si 0.797 3.203 15 H -0.187 1.187 16 H -0.213 1.213 17 H -0.187 1.187 18 C -0.016 4.016 19 C -0.182 4.182 20 C 0.074 3.926 21 H 0.113 0.887 22 N -0.354 5.354 23 C 0.403 3.597 24 O -0.479 6.479 25 O -0.286 6.286 26 C 0.090 3.910 27 C -0.237 4.237 28 C -0.195 4.195 29 C -0.235 4.235 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.000 1.000 38 H 0.000 1.000 39 H 0.071 0.929 40 H 0.113 0.887 41 H 0.097 0.903 42 H 0.102 0.898 43 H 0.104 0.896 44 H 0.247 0.753 45 H 0.078 0.922 46 H 0.106 0.894 47 H 0.084 0.916 48 H 0.088 0.912 49 H 0.118 0.882 50 H 0.085 0.915 51 H 0.083 0.917 52 H 0.106 0.894 53 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -19.040 -12.212 -22.982 32.247 hybrid contribution 0.830 0.176 0.913 1.246 sum -18.211 -12.036 -22.070 31.041 Atomic orbital electron populations 1.21729 0.92307 1.02864 1.02857 1.21801 0.97693 1.00016 0.92675 0.89286 1.21803 0.79223 1.01254 0.98952 1.48210 1.06721 1.61127 1.18315 1.21304 0.90598 0.75959 0.81767 1.90644 1.76380 1.46390 1.33209 1.21635 0.89183 1.03618 1.01221 1.18675 0.94500 0.94146 0.92039 1.21674 0.92228 1.40165 1.04053 0.90701 1.26131 1.04752 0.94659 0.94871 1.70172 1.37605 1.41680 1.08206 0.85390 0.78243 0.79077 0.77634 1.18701 1.21341 1.18713 1.21871 0.99545 0.97367 0.82798 1.22309 0.95466 1.02482 0.97918 1.20888 0.93443 0.79290 0.99028 0.88722 1.44840 1.70082 1.13484 1.07007 1.18200 0.76353 0.80619 0.84508 1.90897 1.56273 1.70258 1.30455 1.86320 1.80012 1.24467 1.37848 1.22354 0.96547 0.92713 0.79341 1.22473 0.95766 1.03769 1.01707 1.21888 1.02108 0.91204 1.04254 1.22460 0.98455 1.02114 1.00506 0.91698 0.91791 0.91403 0.89960 0.90726 0.88066 0.88181 1.00009 0.99955 0.92863 0.88701 0.90261 0.89808 0.89630 0.75279 0.92205 0.89414 0.91585 0.91241 0.88162 0.91467 0.91665 0.89407 0.92016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.05 71.98 0.65 -1.20 16 2 C -0.10 -1.70 2.69 -10.57 -0.03 -1.73 16 3 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 4 C 0.11 2.42 5.44 86.51 0.47 2.89 16 5 N -0.61 -16.40 2.97 -818.07 -2.43 -18.83 16 6 C 0.51 19.85 7.70 87.66 0.67 20.52 16 7 O -0.59 -28.53 15.39 -3.04 -0.05 -28.58 16 8 C -0.12 -4.73 3.99 29.85 0.12 -4.61 16 9 C 0.04 2.46 4.26 29.85 0.13 2.59 16 10 C -0.54 -31.00 9.11 25.60 0.23 -30.77 16 11 H 0.07 3.88 7.74 -2.91 -0.02 3.86 16 12 C -0.01 -0.38 5.46 84.66 0.46 0.08 16 13 N -0.94 -59.60 13.29 21.45 0.28 -59.31 16 14 Si 0.97 44.37 29.54 68.60 2.03 46.39 16 15 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 16 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 17 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 18 C 0.11 2.16 6.08 86.36 0.52 2.69 16 19 C -0.14 -2.51 5.77 30.67 0.18 -2.34 16 20 C 0.18 2.88 2.21 45.02 0.10 2.98 16 21 H 0.09 1.64 7.57 -2.39 -0.02 1.63 16 22 N -0.69 -10.91 3.60 -570.00 -2.05 -12.97 16 23 C 0.65 12.67 8.02 129.79 1.04 13.71 16 24 O -0.59 -13.90 11.54 19.80 0.23 -13.67 16 25 O -0.37 -6.75 9.94 -55.51 -0.55 -7.30 16 26 C 0.13 1.84 1.13 -10.79 -0.01 1.83 16 27 C -0.18 -2.67 8.37 71.98 0.60 -2.07 16 28 C -0.14 -1.29 8.85 71.98 0.64 -0.65 16 29 C -0.18 -2.50 8.37 71.98 0.60 -1.89 16 30 H 0.06 0.77 7.54 -2.39 -0.02 0.75 16 31 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.08 1.44 6.63 -2.39 -0.02 1.43 16 34 H 0.07 2.07 7.00 -2.38 -0.02 2.05 16 35 H 0.10 3.63 7.69 -2.38 -0.02 3.61 16 36 H 0.10 3.60 7.94 -2.39 -0.02 3.58 16 37 H -0.02 -1.17 8.10 -2.38 -0.02 -1.19 16 38 H -0.02 -1.14 8.10 -2.39 -0.02 -1.16 16 39 H 0.26 15.68 8.31 -92.70 -0.77 14.91 16 40 H 0.09 1.97 5.93 -2.39 -0.01 1.96 16 41 H 0.08 1.43 7.74 -2.39 -0.02 1.41 16 42 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.41 5.59 6.83 -92.70 -0.63 4.96 16 45 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 46 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.07 1.31 5.88 -2.39 -0.01 1.30 16 48 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 49 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 50 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 51 H 0.06 1.25 5.88 -2.39 -0.01 1.24 16 52 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 53 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -78.05 410.70 4.10 -73.95 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: 0.26 Total: 18.28 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: 6.38 Total: 2.03 kcal Atomic # 7 Polarization: -86.91 SS G_CDS: -4.20 Total: -91.11 kcal Atomic # 8 Polarization: -49.18 SS G_CDS: -0.37 Total: -49.55 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Total: -78.05 4.10 -73.95 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496642013.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.931 kcal (2) G-P(sol) polarization free energy of solvation -78.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds