Wall clock time and date at job start Wed Apr 1 2020 00:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.52594 * 2 1 4 4 C 1.53192 * 109.49973 * 120.08157 * 2 1 3 5 5 N 1.46926 * 108.77820 * 174.58470 * 4 2 1 6 6 C 1.34779 * 120.63044 * 126.36870 * 5 4 2 7 7 O 1.21283 * 119.99742 * 0.02562 * 6 5 4 8 8 C 1.50696 * 120.00186 * 180.02562 * 6 5 4 9 9 C 1.52997 * 109.47364 * 179.97438 * 8 6 5 10 10 C 1.50696 * 109.47142 * 180.02562 * 9 8 6 11 11 H 1.08002 * 120.00275 * 359.97438 * 10 9 8 12 12 C 1.37880 * 120.00300 * 180.02562 * 10 9 8 13 13 N 1.31520 * 119.99404 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00539 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.46887 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47233 * 119.99646 * 14 12 10 17 17 H 1.48490 * 109.47200 * 240.00140 * 14 12 10 18 18 C 1.46925 * 118.73914 * 306.39111 * 5 4 2 19 19 C 1.53191 * 108.77423 * 53.60547 * 18 5 4 20 20 C 1.53037 * 109.31499 * 305.36620 * 19 18 5 21 21 H 1.09001 * 109.46057 * 301.34715 * 20 19 18 22 22 N 1.46498 * 109.45999 * 181.37091 * 20 19 18 23 23 C 1.34783 * 120.00157 * 85.00347 * 22 20 19 24 24 O 1.21515 * 119.99533 * 359.97438 * 23 22 20 25 25 O 1.34632 * 120.00272 * 179.97438 * 23 22 20 26 26 C 1.45202 * 117.00207 * 179.97438 * 25 23 22 27 27 C 1.53002 * 109.46514 * 60.00464 * 26 25 23 28 28 C 1.52992 * 109.47365 * 180.02562 * 26 25 23 29 29 C 1.52998 * 109.47143 * 300.00296 * 26 25 23 30 30 H 1.09001 * 109.47163 * 299.91965 * 1 2 3 31 31 H 1.08995 * 109.47442 * 59.91927 * 1 2 3 32 32 H 1.09005 * 109.47363 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.58809 * 54.79804 * 4 2 1 34 34 H 1.09002 * 109.58657 * 294.37791 * 4 2 1 35 35 H 1.08995 * 109.47063 * 300.00414 * 8 6 5 36 36 H 1.09006 * 109.47000 * 59.99630 * 8 6 5 37 37 H 1.08998 * 109.47021 * 299.99913 * 9 8 6 38 38 H 1.08997 * 109.47209 * 59.99747 * 9 8 6 39 39 H 0.97001 * 119.99852 * 179.97438 * 13 12 10 40 40 H 1.08998 * 109.58340 * 173.39503 * 18 5 4 41 41 H 1.09005 * 109.58474 * 293.81790 * 18 5 4 42 42 H 1.08997 * 109.49512 * 65.31959 * 19 18 5 43 43 H 1.08998 * 109.49723 * 185.41351 * 19 18 5 44 44 H 0.97002 * 120.00306 * 264.99851 * 22 20 19 45 45 H 1.08995 * 109.47715 * 59.99806 * 27 26 25 46 46 H 1.09003 * 109.46718 * 180.02562 * 27 26 25 47 47 H 1.09009 * 109.46834 * 299.99683 * 27 26 25 48 48 H 1.09001 * 109.47174 * 59.99877 * 28 26 25 49 49 H 1.08994 * 109.47541 * 180.02562 * 28 26 25 50 50 H 1.09008 * 109.47437 * 300.00552 * 28 26 25 51 51 H 1.09005 * 109.46925 * 59.99795 * 29 26 25 52 52 H 1.08998 * 109.46728 * 179.97438 * 29 26 25 53 53 H 1.08995 * 109.47098 * 299.99481 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 1.2496 5 7 3.5046 -0.8292 1.1695 6 6 4.2812 -0.3856 2.1779 7 8 3.7732 0.1057 3.1635 8 6 5.7806 -0.5002 2.0807 9 6 6.4192 0.0731 3.3473 10 6 7.9186 -0.0410 3.2498 11 1 8.3710 -0.4789 2.3723 12 6 8.7131 0.4129 4.2812 13 7 8.1622 0.9457 5.3500 14 14 10.5718 0.2709 4.1607 15 1 10.9371 -0.3609 2.8673 16 1 11.1778 1.6243 4.2396 17 1 11.0780 -0.5641 5.2793 18 6 4.1053 -1.4268 -0.0308 19 6 3.5708 -0.6951 -1.2660 20 6 2.0408 -0.7232 -1.2483 21 1 1.6966 -1.7573 -1.2352 22 7 1.5265 -0.0528 -2.4451 23 6 1.3970 -0.7381 -3.5984 24 8 1.7074 -1.9120 -3.6455 25 8 0.9239 -0.1222 -4.6981 26 6 0.8118 -0.9219 -5.9049 27 6 -0.1355 -2.0965 -5.6520 28 6 0.2609 -0.0571 -7.0404 29 6 2.1923 -1.4545 -6.2938 30 1 -0.3633 0.5126 0.8907 31 1 -0.3634 0.5151 -0.8892 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6052 -1.7217 1.2980 34 1 1.7637 -0.1580 2.1389 35 1 6.0588 -1.5488 1.9756 36 1 6.1321 0.0576 1.2126 37 1 6.1409 1.1217 3.4518 38 1 6.0677 -0.4843 4.2156 39 1 8.7211 1.2647 6.0759 40 1 5.1895 -1.3247 0.0138 41 1 3.8375 -2.4819 -0.0867 42 1 3.9159 0.3387 -1.2541 43 1 3.9333 -1.1898 -2.1671 44 1 1.2790 0.8844 -2.4075 45 1 -1.1189 -1.7170 -5.3748 46 1 -0.2193 -2.6971 -6.5577 47 1 0.2575 -2.7125 -4.8430 48 1 0.9360 0.7795 -7.2204 49 1 0.1763 -0.6575 -7.9461 50 1 -0.7226 0.3228 -6.7635 51 1 2.5852 -2.0705 -5.4848 52 1 2.1080 -2.0552 -7.1994 53 1 2.8671 -0.6177 -6.4739 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496642303.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:29:23 Heat of formation + Delta-G solvation = -160.461968 kcal Electronic energy + Delta-G solvation = -30707.800699 eV Core-core repulsion = 26577.880287 eV Total energy + Delta-G solvation = -4129.920412 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.94566 -41.20572 -39.42879 -37.81822 -35.90446 -35.60820 -34.99800 -33.97211 -32.82252 -31.96764 -28.57563 -28.31709 -28.26016 -27.24622 -26.13325 -23.82983 -23.40952 -22.87790 -21.60302 -20.85697 -19.91931 -19.07939 -18.82119 -17.90279 -17.47440 -17.17243 -16.85371 -16.60205 -16.46741 -16.39670 -15.72352 -15.40374 -15.18236 -15.01977 -14.73059 -14.55341 -14.40498 -14.21275 -13.85250 -13.78525 -13.31140 -13.28464 -13.13572 -13.09287 -12.95430 -12.86079 -12.84397 -12.82128 -12.60877 -12.53500 -12.39434 -12.26583 -12.11228 -11.98536 -11.92888 -11.59049 -11.49828 -11.33780 -11.27540 -11.06591 -10.68308 -10.57366 -10.16795 -9.68282 -8.17774 -6.31518 1.17054 1.42358 1.43638 1.56910 1.68686 1.80932 2.01513 2.43269 3.13974 3.15257 3.46408 3.69217 3.79085 3.79329 3.84524 3.89948 3.98995 4.04584 4.23813 4.32016 4.38449 4.46992 4.51611 4.56896 4.62583 4.65717 4.66547 4.69910 4.79704 4.80807 4.81075 4.87630 4.89067 4.91943 4.98928 5.06127 5.10834 5.12506 5.20237 5.27995 5.32569 5.34034 5.43053 5.49089 5.61253 5.62004 5.63346 5.85733 6.18044 6.36482 6.43897 6.87085 7.25588 7.38421 7.38650 8.95050 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017894 B = 0.002105 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.427199 B =13300.615028 C =14404.016147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.101 4.101 3 H 0.079 0.921 4 C 0.116 3.884 5 N -0.613 5.613 6 C 0.513 3.487 7 O -0.587 6.587 8 C -0.117 4.117 9 C 0.043 3.957 10 C -0.541 4.541 11 H 0.076 0.924 12 C -0.008 4.008 13 N -0.937 5.937 14 Si 0.973 3.027 15 H -0.253 1.253 16 H -0.280 1.280 17 H -0.281 1.281 18 C 0.107 3.893 19 C -0.140 4.140 20 C 0.177 3.823 21 H 0.090 0.910 22 N -0.695 5.695 23 C 0.648 3.352 24 O -0.588 6.588 25 O -0.371 6.371 26 C 0.126 3.874 27 C -0.179 4.179 28 C -0.137 4.137 29 C -0.180 4.180 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.102 0.898 36 H 0.102 0.898 37 H -0.018 1.018 38 H -0.018 1.018 39 H 0.262 0.738 40 H 0.099 0.901 41 H 0.088 0.912 42 H 0.070 0.930 43 H 0.084 0.916 44 H 0.414 0.586 45 H 0.061 0.939 46 H 0.087 0.913 47 H 0.064 0.936 48 H 0.067 0.933 49 H 0.100 0.900 50 H 0.069 0.931 51 H 0.064 0.936 52 H 0.088 0.912 53 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.109 -4.629 -27.914 34.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.121 4.121 3 H 0.097 0.903 4 C -0.007 4.007 5 N -0.347 5.347 6 C 0.304 3.696 7 O -0.467 6.467 8 C -0.157 4.157 9 C 0.005 3.995 10 C -0.579 4.579 11 H 0.094 0.906 12 C -0.205 4.205 13 N -0.577 5.577 14 Si 0.797 3.203 15 H -0.176 1.176 16 H -0.206 1.206 17 H -0.207 1.207 18 C -0.015 4.015 19 C -0.179 4.179 20 C 0.073 3.927 21 H 0.108 0.892 22 N -0.354 5.354 23 C 0.402 3.598 24 O -0.479 6.479 25 O -0.285 6.285 26 C 0.090 3.910 27 C -0.236 4.236 28 C -0.194 4.194 29 C -0.237 4.237 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.001 0.999 38 H 0.000 1.000 39 H 0.071 0.929 40 H 0.118 0.882 41 H 0.106 0.894 42 H 0.089 0.911 43 H 0.103 0.897 44 H 0.251 0.749 45 H 0.080 0.920 46 H 0.106 0.894 47 H 0.082 0.918 48 H 0.086 0.914 49 H 0.118 0.882 50 H 0.088 0.912 51 H 0.083 0.917 52 H 0.106 0.894 53 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.223 -4.893 -27.371 33.803 hybrid contribution 0.808 0.556 0.714 1.213 sum -18.415 -4.337 -26.657 32.688 Atomic orbital electron populations 1.21736 0.92235 1.02901 1.02891 1.21681 0.97719 1.00071 0.92611 0.90303 1.21678 0.79161 1.01540 0.98334 1.48270 1.06809 1.61072 1.18530 1.21330 0.90643 0.75894 0.81761 1.90641 1.76402 1.46421 1.33210 1.21644 0.89058 1.03757 1.01234 1.18691 0.94543 0.94174 0.92080 1.21736 0.92204 1.39993 1.03935 0.90626 1.26141 1.04769 0.94725 0.94896 1.70187 1.37451 1.41912 1.08171 0.85276 0.78357 0.77840 0.78790 1.17611 1.20626 1.20679 1.21911 0.99768 0.97717 0.82124 1.22294 0.95417 1.01998 0.98211 1.20886 0.92863 0.97311 0.81623 0.89219 1.44750 1.68297 1.15107 1.07196 1.18230 0.76569 0.83632 0.81418 1.90903 1.55850 1.16132 1.85017 1.86313 1.78389 1.44691 1.19144 1.22368 0.96588 0.91170 0.80875 1.22466 0.98872 0.98099 1.04169 1.21885 1.01784 1.00114 0.95604 1.22474 0.95718 1.02120 1.03429 0.91741 0.91136 0.91886 0.89790 0.90562 0.87998 0.88005 0.99937 0.99958 0.92884 0.88231 0.89368 0.91125 0.89729 0.74950 0.91964 0.89374 0.91750 0.91371 0.88152 0.91190 0.91709 0.89355 0.92169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.02 71.98 0.65 -1.22 16 2 C -0.10 -1.72 2.46 -10.72 -0.03 -1.75 16 3 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 4 C 0.12 2.68 5.72 86.36 0.49 3.18 16 5 N -0.61 -16.98 2.97 -818.89 -2.43 -19.41 16 6 C 0.51 20.07 7.70 87.66 0.67 20.75 16 7 O -0.59 -28.81 15.40 -3.04 -0.05 -28.86 16 8 C -0.12 -4.76 3.99 29.85 0.12 -4.64 16 9 C 0.04 2.40 4.26 29.85 0.13 2.52 16 10 C -0.54 -30.89 9.11 25.60 0.23 -30.65 16 11 H 0.08 3.93 7.74 -2.91 -0.02 3.91 16 12 C -0.01 -0.47 5.46 84.65 0.46 0.00 16 13 N -0.94 -59.69 13.29 21.45 0.28 -59.40 16 14 Si 0.97 44.48 29.54 68.60 2.03 46.51 16 15 H -0.25 -10.64 7.11 99.48 0.71 -9.93 16 16 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 17 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 18 C 0.11 2.21 6.34 86.36 0.55 2.76 16 19 C -0.14 -2.53 5.65 30.67 0.17 -2.36 16 20 C 0.18 2.96 1.88 45.02 0.08 3.04 16 21 H 0.09 1.66 7.58 -2.39 -0.02 1.64 16 22 N -0.69 -10.79 4.37 -569.99 -2.49 -13.28 16 23 C 0.65 12.67 8.02 129.79 1.04 13.71 16 24 O -0.59 -14.12 11.54 19.79 0.23 -13.89 16 25 O -0.37 -6.57 9.94 -55.41 -0.55 -7.12 16 26 C 0.13 1.79 1.13 -10.80 -0.01 1.77 16 27 C -0.18 -2.49 8.37 71.98 0.60 -1.89 16 28 C -0.14 -1.18 8.85 71.98 0.64 -0.54 16 29 C -0.18 -2.63 8.37 71.98 0.60 -2.02 16 30 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.07 0.80 7.37 -2.39 -0.02 0.78 16 32 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 33 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 34 H 0.08 2.17 7.01 -2.39 -0.02 2.15 16 35 H 0.10 3.66 7.94 -2.39 -0.02 3.64 16 36 H 0.10 3.65 7.69 -2.38 -0.02 3.63 16 37 H -0.02 -1.13 8.10 -2.39 -0.02 -1.15 16 38 H -0.02 -1.14 8.10 -2.39 -0.02 -1.16 16 39 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 40 H 0.10 2.04 5.93 -2.39 -0.01 2.03 16 41 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 42 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.41 4.98 8.42 -92.71 -0.78 4.20 16 45 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 46 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.06 1.24 5.88 -2.38 -0.01 1.23 16 48 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 49 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 50 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 51 H 0.06 1.29 5.88 -2.38 -0.01 1.28 16 52 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 53 H 0.06 0.85 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -78.92 414.62 3.53 -75.39 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: 0.10 Total: 17.39 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: 6.41 Total: 2.67 kcal Atomic # 7 Polarization: -87.46 SS G_CDS: -4.64 Total: -92.10 kcal Atomic # 8 Polarization: -49.50 SS G_CDS: -0.37 Total: -49.87 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -78.92 3.53 -75.39 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496642303.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.074 kcal (2) G-P(sol) polarization free energy of solvation -78.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds