Wall clock time and date at job start Tue Mar 31 2020 23:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 110.88778 * 2 1 4 4 C 1.55159 * 111.00351 * 236.11993 * 2 1 3 5 5 C 1.54322 * 102.94495 * 206.38422 * 4 2 1 6 6 N 1.47027 * 107.26721 * 22.19281 * 5 4 2 7 7 C 1.34776 * 125.64546 * 181.02488 * 6 5 4 8 8 O 1.21285 * 120.00049 * 174.75406 * 7 6 5 9 9 C 1.50698 * 120.00041 * 354.74372 * 7 6 5 10 10 H 1.09002 * 109.47404 * 38.74884 * 9 7 6 11 11 C 1.52999 * 109.47607 * 278.74309 * 9 7 6 12 12 C 1.52993 * 109.47216 * 300.73012 * 11 9 7 13 13 C 1.50703 * 109.47456 * 175.69846 * 12 11 9 14 14 H 1.08000 * 119.99730 * 4.71877 * 13 12 11 15 15 C 1.37878 * 120.00262 * 184.73070 * 13 12 11 16 16 N 1.31513 * 119.99723 * 174.86026 * 15 13 12 17 17 Si 1.86795 * 119.99839 * 354.85339 * 15 13 12 18 18 H 1.48497 * 109.47498 * 275.04651 * 17 15 13 19 19 H 1.48497 * 109.47352 * 35.04832 * 17 15 13 20 20 H 1.48501 * 109.47040 * 155.04370 * 17 15 13 21 21 N 1.46505 * 109.47127 * 158.74298 * 9 7 6 22 22 C 1.34771 * 120.00022 * 207.29765 * 21 9 7 23 23 O 1.21503 * 120.00366 * 5.29315 * 22 21 9 24 24 O 1.34642 * 119.99889 * 185.29284 * 22 21 9 25 25 C 1.45205 * 117.00029 * 183.77210 * 24 22 21 26 26 C 1.52995 * 109.46915 * 59.16574 * 25 24 22 27 27 C 1.53001 * 109.46876 * 179.16723 * 25 24 22 28 28 C 1.53001 * 109.47189 * 299.16648 * 25 24 22 29 29 C 1.47416 * 108.70352 * 1.28780 * 6 5 4 30 30 H 1.09007 * 109.47536 * 182.42788 * 1 2 3 31 31 H 1.08997 * 109.47188 * 302.42676 * 1 2 3 32 32 H 1.09002 * 109.47740 * 62.42609 * 1 2 3 33 33 H 1.09007 * 110.71827 * 88.02150 * 4 2 1 34 34 H 1.09002 * 110.72309 * 324.74845 * 4 2 1 35 35 H 1.08998 * 109.88383 * 262.77963 * 5 4 2 36 36 H 1.09004 * 109.88381 * 141.60748 * 5 4 2 37 37 H 1.08995 * 109.47291 * 180.72739 * 11 9 7 38 38 H 1.09004 * 109.46898 * 60.73050 * 11 9 7 39 39 H 1.09002 * 109.47072 * 55.69963 * 12 11 9 40 40 H 1.08999 * 109.47369 * 295.70230 * 12 11 9 41 41 H 0.97002 * 119.99645 * 179.97438 * 16 15 13 42 42 H 0.97002 * 119.99437 * 27.29598 * 21 9 7 43 43 H 1.09005 * 109.47223 * 59.99769 * 26 25 24 44 44 H 1.09001 * 109.47120 * 179.97438 * 26 25 24 45 45 H 1.08998 * 109.47644 * 299.99931 * 26 25 24 46 46 H 1.08994 * 109.47390 * 59.99889 * 27 25 24 47 47 H 1.08993 * 109.46913 * 180.02562 * 27 25 24 48 48 H 1.09005 * 109.46884 * 299.99999 * 27 25 24 49 49 H 1.08999 * 109.47091 * 66.76853 * 28 25 24 50 50 H 1.08991 * 109.46801 * 186.77210 * 28 25 24 51 51 H 1.09000 * 109.47119 * 306.77755 * 28 25 24 52 52 H 1.08996 * 110.37087 * 94.48321 * 29 6 5 53 53 H 1.09000 * 110.36499 * 216.80616 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9185 1.0183 0.0000 4 6 2.0861 -0.8075 -1.2026 5 6 3.4678 -1.2731 -0.6970 6 7 3.4280 -1.2422 0.7724 7 6 4.4490 -1.5603 1.5927 8 8 4.3347 -1.4079 2.7905 9 6 5.7326 -2.1055 1.0216 10 1 5.9651 -1.5877 0.0910 11 6 5.5734 -3.6021 0.7464 12 6 5.2293 -4.3264 2.0494 13 6 4.9688 -5.7825 1.7611 14 1 5.1155 -6.1701 0.7637 15 6 4.5431 -6.6197 2.7704 16 7 4.2189 -7.8650 2.4989 17 14 4.4270 -5.9853 4.5235 18 1 5.7538 -6.1000 5.1804 19 1 4.0039 -4.5619 4.5078 20 1 3.4309 -6.7895 5.2760 21 7 6.8206 -1.8983 1.9806 22 6 8.0897 -1.7765 1.5438 23 8 8.3213 -1.7419 0.3516 24 8 9.1011 -1.6931 2.4287 25 6 10.4324 -1.4790 1.8900 26 6 10.4554 -0.1746 1.0907 27 6 11.4393 -1.3912 3.0386 28 6 10.8053 -2.6456 0.9730 29 6 2.0844 -0.8118 1.2000 30 1 -0.3634 -1.0268 0.0435 31 1 -0.3633 0.5510 0.8674 32 1 -0.3635 0.4757 -0.9109 33 1 2.1914 -0.1692 -2.0799 34 1 1.4471 -1.6631 -1.4212 35 1 4.2424 -0.5982 -1.0610 36 1 3.6658 -2.2882 -1.0412 37 1 6.5060 -3.9990 0.3454 38 1 4.7725 -3.7553 0.0230 39 1 4.3386 -3.8783 2.4899 40 1 6.0631 -4.2374 2.7457 41 1 3.9197 -8.4541 3.2091 42 1 6.6274 -1.8488 2.9299 43 1 10.1897 0.6566 1.7440 44 1 11.4549 -0.0136 0.6867 45 1 9.7381 -0.2371 0.2724 46 1 11.4229 -2.3204 3.6081 47 1 12.4385 -1.2300 2.6343 48 1 11.1736 -0.5600 3.6919 49 1 10.1627 -2.6355 0.0926 50 1 11.8459 -2.5469 0.6644 51 1 10.6726 -3.5856 1.5087 52 1 1.4537 -1.6783 1.3985 53 1 2.1524 -0.1802 2.0857 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496721543.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:09 Heat of formation + Delta-G solvation = -153.289714 kcal Electronic energy + Delta-G solvation = -31789.250129 eV Core-core repulsion = 27659.640730 eV Total energy + Delta-G solvation = -4129.609399 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.08572 -41.26200 -39.17689 -38.22868 -36.63914 -35.36333 -34.85493 -34.04731 -33.02174 -30.58116 -29.89130 -28.32664 -28.27917 -27.45839 -25.70092 -24.16258 -23.51514 -22.34853 -21.28365 -21.01752 -20.26444 -19.51239 -19.02162 -18.02078 -17.80028 -17.32539 -17.26475 -16.53498 -16.42360 -16.17447 -15.76114 -15.39187 -15.14688 -14.89630 -14.76832 -14.68853 -14.53594 -14.38074 -14.05062 -13.82893 -13.52264 -13.35586 -13.32812 -13.29745 -13.15820 -13.00453 -12.86981 -12.82037 -12.66297 -12.51643 -12.32245 -12.02671 -11.96695 -11.91047 -11.84924 -11.59833 -11.52395 -11.50679 -11.38520 -11.14085 -10.96937 -10.80329 -10.29113 -9.74088 -8.36086 -6.38005 0.97634 1.27097 1.28763 1.38272 1.42623 1.68162 1.97370 2.29035 2.99050 3.09946 3.23911 3.65293 3.66637 3.77247 3.82250 3.86544 3.91976 3.96922 4.00146 4.27389 4.38659 4.41884 4.52478 4.57164 4.60322 4.61205 4.64903 4.75110 4.77605 4.78881 4.86532 4.88236 4.89892 4.92869 4.95098 5.00390 5.04577 5.15623 5.17878 5.26967 5.31063 5.31449 5.32128 5.36602 5.41369 5.49107 5.53158 5.58845 6.20617 6.29408 6.32709 6.67998 6.92041 7.25503 7.26392 8.80069 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.007070 B = 0.004585 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3959.556623 B = 6105.802338 C = 8961.905229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.093 4.093 3 H 0.094 0.906 4 C -0.119 4.119 5 C 0.082 3.918 6 N -0.615 5.615 7 C 0.531 3.469 8 O -0.570 6.570 9 C 0.159 3.841 10 H 0.127 0.873 11 C -0.100 4.100 12 C -0.001 4.001 13 C -0.527 4.527 14 H 0.041 0.959 15 C 0.017 3.983 16 N -0.942 5.942 17 Si 0.934 3.066 18 H -0.266 1.266 19 H -0.262 1.262 20 H -0.278 1.278 21 N -0.695 5.695 22 C 0.657 3.343 23 O -0.582 6.582 24 O -0.372 6.372 25 C 0.120 3.880 26 C -0.176 4.176 27 C -0.136 4.136 28 C -0.180 4.180 29 C 0.099 3.901 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.079 0.921 33 H 0.111 0.889 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.081 0.919 39 H 0.011 0.989 40 H 0.007 0.993 41 H 0.267 0.733 42 H 0.412 0.588 43 H 0.063 0.937 44 H 0.096 0.904 45 H 0.063 0.937 46 H 0.062 0.938 47 H 0.108 0.892 48 H 0.070 0.930 49 H 0.065 0.935 50 H 0.097 0.903 51 H 0.048 0.952 52 H 0.061 0.939 53 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.790 21.565 -6.826 22.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.112 4.112 3 H 0.113 0.887 4 C -0.156 4.156 5 C -0.040 4.040 6 N -0.348 5.348 7 C 0.319 3.681 8 O -0.449 6.449 9 C 0.052 3.948 10 H 0.145 0.855 11 C -0.138 4.138 12 C -0.038 4.038 13 C -0.565 4.565 14 H 0.059 0.941 15 C -0.181 4.181 16 N -0.582 5.582 17 Si 0.758 3.242 18 H -0.191 1.191 19 H -0.186 1.186 20 H -0.204 1.204 21 N -0.354 5.354 22 C 0.411 3.589 23 O -0.473 6.473 24 O -0.287 6.287 25 C 0.084 3.916 26 C -0.233 4.233 27 C -0.193 4.193 28 C -0.237 4.237 29 C -0.023 4.023 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.130 0.870 34 H 0.100 0.900 35 H 0.106 0.894 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.100 0.900 39 H 0.029 0.971 40 H 0.026 0.974 41 H 0.076 0.924 42 H 0.248 0.752 43 H 0.082 0.918 44 H 0.115 0.885 45 H 0.082 0.918 46 H 0.081 0.919 47 H 0.127 0.873 48 H 0.089 0.911 49 H 0.084 0.916 50 H 0.116 0.884 51 H 0.068 0.932 52 H 0.079 0.921 53 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.938 21.468 -6.652 22.817 hybrid contribution -0.251 -0.716 1.386 1.580 sum 3.687 20.752 -5.267 21.725 Atomic orbital electron populations 1.21689 0.92377 1.02420 1.03105 1.22370 0.97146 0.99034 0.92667 0.88747 1.22759 0.93487 1.00872 0.98496 1.22498 1.00939 1.02733 0.77842 1.48422 1.12019 1.65920 1.08403 1.20209 0.85150 0.76703 0.86026 1.90665 1.82699 1.55300 1.16272 1.20791 0.83385 0.97700 0.92934 0.85512 1.21707 1.02325 0.90781 0.99036 1.19394 0.95615 0.94200 0.94637 1.21372 1.44614 0.93957 0.96565 0.94057 1.25774 0.94331 0.94944 1.03011 1.70034 1.46565 1.07178 1.34457 0.85918 0.78766 0.79099 0.80376 1.19084 1.18632 1.20383 1.44416 1.03194 1.75972 1.11868 1.17928 0.81680 0.75641 0.83636 1.90854 1.83940 1.56856 1.15605 1.86346 1.17568 1.85170 1.39623 1.22524 0.76867 0.96469 0.95714 1.22443 1.04731 0.95308 1.00788 1.21897 0.97484 1.03372 0.96545 1.22485 1.03855 0.96983 1.00352 1.22569 0.81952 0.98516 0.99222 0.92671 0.92130 0.90213 0.87021 0.89962 0.89360 0.90933 0.91685 0.90048 0.97094 0.97420 0.92405 0.75178 0.91815 0.88495 0.91843 0.91918 0.87334 0.91064 0.91638 0.88433 0.93248 0.92084 0.91537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.30 71.98 0.67 -1.03 16 2 C -0.09 -1.43 3.65 -9.33 -0.03 -1.46 16 3 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 4 C -0.12 -1.65 6.42 31.78 0.20 -1.44 16 5 C 0.08 1.64 6.19 86.73 0.54 2.17 16 6 N -0.61 -17.32 3.32 -811.37 -2.70 -20.01 16 7 C 0.53 18.83 5.93 87.66 0.52 19.35 16 8 O -0.57 -23.99 15.69 -3.04 -0.05 -24.04 16 9 C 0.16 5.49 2.23 44.24 0.10 5.58 16 10 H 0.13 3.81 6.70 -2.39 -0.02 3.80 16 11 C -0.10 -4.05 5.10 30.59 0.16 -3.90 16 12 C 0.00 -0.05 3.66 29.85 0.11 0.06 16 13 C -0.53 -31.43 9.65 25.60 0.25 -31.18 16 14 H 0.04 2.65 7.99 -2.91 -0.02 2.62 16 15 C 0.02 1.05 5.47 84.66 0.46 1.51 16 16 N -0.94 -60.17 13.96 21.45 0.30 -59.87 16 17 Si 0.93 47.76 27.47 68.60 1.88 49.65 16 18 H -0.27 -13.09 7.11 99.48 0.71 -12.39 16 19 H -0.26 -13.39 6.59 99.48 0.66 -12.74 16 20 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 21 N -0.69 -24.68 4.37 -573.73 -2.51 -27.19 16 22 C 0.66 22.76 8.03 129.79 1.04 23.81 16 23 O -0.58 -20.80 11.56 19.83 0.23 -20.57 16 24 O -0.37 -11.73 9.94 -55.51 -0.55 -12.28 16 25 C 0.12 2.90 1.13 -10.79 -0.01 2.88 16 26 C -0.18 -3.70 8.36 71.98 0.60 -3.10 16 27 C -0.14 -2.36 8.85 71.98 0.64 -1.72 16 28 C -0.18 -4.44 8.27 71.98 0.60 -3.85 16 29 C 0.10 2.44 6.41 86.93 0.56 2.99 16 30 H 0.05 0.76 8.10 -2.38 -0.02 0.74 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.11 0.97 8.14 -2.38 -0.02 0.95 16 34 H 0.08 1.16 8.04 -2.39 -0.02 1.14 16 35 H 0.09 1.47 7.95 -2.39 -0.02 1.45 16 36 H 0.07 1.56 7.10 -2.38 -0.02 1.54 16 37 H 0.06 2.75 8.14 -2.39 -0.02 2.74 16 38 H 0.08 3.13 7.10 -2.38 -0.02 3.11 16 39 H 0.01 0.57 5.69 -2.39 -0.01 0.55 16 40 H 0.01 0.38 7.29 -2.39 -0.02 0.37 16 41 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 42 H 0.41 15.05 7.90 -92.71 -0.73 14.32 16 43 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 44 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.06 1.66 5.95 -2.39 -0.01 1.65 16 46 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 47 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 48 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 49 H 0.06 1.95 6.02 -2.39 -0.01 1.94 16 50 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 51 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 52 H 0.06 1.62 8.01 -2.39 -0.02 1.60 16 53 H 0.07 1.76 7.99 -2.39 -0.02 1.74 16 Total: -1.00 -77.49 413.59 3.11 -74.39 By element: Atomic # 1 Polarization: 29.15 SS G_CDS: 0.10 Total: 29.25 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: 6.39 Total: 10.68 kcal Atomic # 7 Polarization: -102.17 SS G_CDS: -4.90 Total: -107.07 kcal Atomic # 8 Polarization: -56.52 SS G_CDS: -0.37 Total: -56.89 kcal Atomic # 14 Polarization: 47.76 SS G_CDS: 1.88 Total: 49.65 kcal Total: -77.49 3.11 -74.39 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496721543.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.903 kcal (2) G-P(sol) polarization free energy of solvation -77.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds