Wall clock time and date at job start Tue Mar 31 2020 23:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 110.63873 * 2 1 4 4 C 1.55158 * 110.72184 * 123.14076 * 2 1 3 5 5 C 1.54913 * 101.58101 * 153.86650 * 4 2 1 6 6 N 1.47423 * 104.83106 * 322.98936 * 5 4 2 7 7 C 1.34775 * 125.64589 * 204.08889 * 6 5 4 8 8 O 1.21275 * 120.00172 * 185.16025 * 7 6 5 9 9 C 1.50705 * 119.99795 * 4.89004 * 7 6 5 10 10 H 1.08998 * 109.47341 * 326.81858 * 9 7 6 11 11 C 1.52998 * 109.47158 * 86.82368 * 9 7 6 12 12 C 1.53003 * 109.47048 * 185.34523 * 11 9 7 13 13 C 1.50703 * 109.47198 * 179.97438 * 12 11 9 14 14 H 1.07995 * 119.99569 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00113 * 179.97438 * 13 12 11 16 16 N 1.31520 * 119.99648 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00147 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47457 * 89.99660 * 17 15 13 19 19 H 1.48498 * 109.47251 * 209.99597 * 17 15 13 20 20 H 1.48496 * 109.47029 * 329.99613 * 17 15 13 21 21 N 1.46508 * 109.46947 * 206.82188 * 9 7 6 22 22 C 1.34774 * 120.00065 * 84.99878 * 21 9 7 23 23 O 1.21508 * 119.99717 * 359.97438 * 22 21 9 24 24 O 1.34630 * 120.00037 * 179.97438 * 22 21 9 25 25 C 1.45194 * 117.00275 * 179.97438 * 24 22 21 26 26 C 1.53007 * 109.46862 * 60.00112 * 25 24 22 27 27 C 1.53002 * 109.47630 * 179.97438 * 25 24 22 28 28 C 1.53002 * 109.47361 * 300.00482 * 25 24 22 29 29 C 1.47017 * 108.70536 * 24.36062 * 6 5 4 30 30 H 1.08995 * 109.47424 * 298.31201 * 1 2 3 31 31 H 1.09003 * 109.47258 * 58.31802 * 1 2 3 32 32 H 1.08999 * 109.46993 * 178.31019 * 1 2 3 33 33 H 1.08995 * 111.00301 * 35.79142 * 4 2 1 34 34 H 1.09005 * 111.03564 * 271.95567 * 4 2 1 35 35 H 1.08998 * 110.36231 * 204.15015 * 5 4 2 36 36 H 1.08998 * 110.45857 * 81.88085 * 5 4 2 37 37 H 1.09003 * 109.46664 * 305.34038 * 11 9 7 38 38 H 1.09000 * 109.47411 * 65.34420 * 11 9 7 39 39 H 1.09004 * 109.47044 * 299.99869 * 12 11 9 40 40 H 1.08998 * 109.47539 * 59.99408 * 12 11 9 41 41 H 0.97001 * 119.99538 * 180.02562 * 16 15 13 42 42 H 0.96997 * 119.99615 * 264.99867 * 21 9 7 43 43 H 1.09007 * 109.46689 * 60.00395 * 26 25 24 44 44 H 1.09001 * 109.47269 * 179.97438 * 26 25 24 45 45 H 1.08992 * 109.46952 * 300.00051 * 26 25 24 46 46 H 1.09002 * 109.46844 * 60.00272 * 27 25 24 47 47 H 1.08997 * 109.47283 * 180.02562 * 27 25 24 48 48 H 1.09000 * 109.47181 * 300.00756 * 27 25 24 49 49 H 1.08997 * 109.46918 * 59.99526 * 28 25 24 50 50 H 1.09001 * 109.46895 * 179.97438 * 28 25 24 51 51 H 1.09000 * 109.46596 * 299.99236 * 28 25 24 52 52 H 1.08998 * 109.88718 * 118.12718 * 29 6 5 53 53 H 1.09006 * 109.88145 * 239.29557 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0790 -0.7934 1.2151 5 6 3.4633 -1.2486 0.6896 6 7 3.2445 -1.5519 -0.7364 7 6 3.9924 -2.3860 -1.4857 8 8 3.7779 -2.4900 -2.6748 9 6 5.0992 -3.1849 -0.8470 10 1 5.5414 -2.6083 -0.0346 11 6 4.5302 -4.4927 -0.2933 12 6 5.6239 -5.2418 0.4707 13 6 5.0632 -6.5297 1.0166 14 1 4.0301 -6.7879 0.8370 15 6 5.8693 -7.3784 1.7453 16 7 7.1276 -7.0641 1.9636 17 14 5.1745 -8.9751 2.4214 18 1 5.3606 -10.0581 1.4226 19 1 5.8842 -9.3317 3.6761 20 1 3.7265 -8.8049 2.7030 21 7 6.1259 -3.4843 -1.8484 22 6 7.0977 -2.5868 -2.1063 23 8 7.1220 -1.5292 -1.5086 24 8 8.0414 -2.8621 -3.0262 25 6 9.0567 -1.8492 -3.2525 26 6 9.8160 -1.5882 -1.9500 27 6 10.0346 -2.3375 -4.3231 28 6 8.3900 -0.5547 -3.7223 29 6 2.0794 -0.7890 -1.2073 30 1 -0.3634 0.4874 0.9047 31 1 -0.3634 0.5397 -0.8745 32 1 -0.3633 -1.0272 -0.0303 33 1 1.4452 -1.6511 1.4403 34 1 2.1850 -0.1487 2.0878 35 1 3.7961 -2.1404 1.2206 36 1 4.1946 -0.4478 0.7993 37 1 3.7022 -4.2722 0.3806 38 1 4.1735 -5.1113 -1.1169 39 1 6.4518 -5.4623 -0.2032 40 1 5.9806 -4.6233 1.2942 41 1 7.6947 -7.6614 2.4759 42 1 6.1061 -4.3284 -2.3258 43 1 10.2910 -2.5105 -1.6154 44 1 10.5785 -0.8281 -2.1200 45 1 9.1196 -1.2405 -1.1870 46 1 9.4941 -2.5237 -5.2512 47 1 10.7971 -1.5772 -4.4927 48 1 10.5096 -3.2596 -3.9880 49 1 7.6936 -0.2071 -2.9592 50 1 9.1522 0.2058 -3.8918 51 1 7.8492 -0.7407 -4.6502 52 1 2.3814 -0.1003 -1.9963 53 1 1.3156 -1.4714 -1.5804 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496721544.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:12 Heat of formation + Delta-G solvation = -156.833805 kcal Electronic energy + Delta-G solvation = -31621.596558 eV Core-core repulsion = 27491.833476 eV Total energy + Delta-G solvation = -4129.763083 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.07071 -41.17950 -39.13796 -38.17531 -36.82541 -35.36343 -34.84243 -34.00470 -32.77254 -30.58586 -29.60873 -28.37327 -28.30342 -27.40097 -25.69155 -24.17113 -23.49464 -22.40816 -21.17500 -21.13301 -20.43135 -19.37096 -18.75013 -18.05491 -17.97340 -17.37652 -17.13047 -16.53982 -16.40489 -16.06382 -15.81770 -15.43707 -15.29376 -14.89084 -14.67827 -14.49120 -14.28331 -14.20550 -13.98302 -13.68087 -13.61936 -13.35906 -13.32297 -13.16551 -12.92306 -12.88357 -12.87737 -12.69164 -12.64611 -12.56076 -12.44528 -12.34450 -11.96282 -11.88660 -11.75241 -11.67531 -11.52518 -11.42226 -11.35622 -11.17119 -11.15486 -10.54060 -10.14728 -9.74838 -8.17663 -6.28470 1.00481 1.42800 1.43493 1.46010 1.54577 1.60957 2.01944 2.43146 3.12311 3.16836 3.32570 3.62454 3.70964 3.74310 3.79199 3.80889 3.91458 3.93845 4.00728 4.27404 4.39755 4.44688 4.53777 4.55887 4.60439 4.61203 4.69499 4.73771 4.74944 4.79943 4.82443 4.86220 4.86374 4.92660 4.99468 5.02905 5.07772 5.13559 5.15798 5.24551 5.27765 5.33765 5.36164 5.46625 5.50154 5.51608 5.65664 5.83469 6.21346 6.28686 6.34388 6.87244 6.96980 7.24957 7.40915 8.93634 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.005663 B = 0.004904 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4943.083422 B = 5708.006103 C = 9858.752260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.094 4.094 3 H 0.096 0.904 4 C -0.119 4.119 5 C 0.083 3.917 6 N -0.615 5.615 7 C 0.521 3.479 8 O -0.574 6.574 9 C 0.162 3.838 10 H 0.103 0.897 11 C -0.094 4.094 12 C 0.035 3.965 13 C -0.540 4.540 14 H 0.063 0.937 15 C 0.005 3.995 16 N -0.930 5.930 17 Si 0.960 3.040 18 H -0.276 1.276 19 H -0.284 1.284 20 H -0.261 1.261 21 N -0.684 5.684 22 C 0.653 3.347 23 O -0.589 6.589 24 O -0.371 6.371 25 C 0.120 3.880 26 C -0.179 4.179 27 C -0.134 4.134 28 C -0.175 4.175 29 C 0.104 3.896 30 H 0.078 0.922 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.081 0.919 34 H 0.111 0.889 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.065 0.935 39 H 0.000 1.000 40 H -0.003 1.003 41 H 0.262 0.738 42 H 0.414 0.586 43 H 0.055 0.945 44 H 0.098 0.902 45 H 0.059 0.941 46 H 0.069 0.931 47 H 0.109 0.891 48 H 0.066 0.934 49 H 0.057 0.943 50 H 0.098 0.902 51 H 0.057 0.943 52 H 0.055 0.945 53 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.570 16.312 -5.734 17.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.113 4.113 3 H 0.115 0.885 4 C -0.157 4.157 5 C -0.039 4.039 6 N -0.348 5.348 7 C 0.308 3.692 8 O -0.454 6.454 9 C 0.054 3.946 10 H 0.121 0.879 11 C -0.132 4.132 12 C -0.002 4.002 13 C -0.578 4.578 14 H 0.081 0.919 15 C -0.193 4.193 16 N -0.570 5.570 17 Si 0.785 3.215 18 H -0.202 1.202 19 H -0.210 1.210 20 H -0.186 1.186 21 N -0.342 5.342 22 C 0.407 3.593 23 O -0.480 6.480 24 O -0.285 6.285 25 C 0.084 3.916 26 C -0.237 4.237 27 C -0.191 4.191 28 C -0.232 4.232 29 C -0.018 4.018 30 H 0.097 0.903 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.099 0.901 34 H 0.129 0.871 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.105 0.895 38 H 0.084 0.916 39 H 0.019 0.981 40 H 0.015 0.985 41 H 0.071 0.929 42 H 0.250 0.750 43 H 0.074 0.926 44 H 0.117 0.883 45 H 0.078 0.922 46 H 0.088 0.912 47 H 0.128 0.872 48 H 0.085 0.915 49 H 0.076 0.924 50 H 0.117 0.883 51 H 0.076 0.924 52 H 0.073 0.927 53 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.396 16.697 -6.077 18.305 hybrid contribution 0.096 -1.357 0.121 1.365 sum -4.300 15.341 -5.956 17.009 Atomic orbital electron populations 1.21731 0.92296 1.02334 1.03133 1.22229 0.97371 0.99264 0.92402 0.88541 1.22896 0.93534 1.00957 0.98274 1.22704 1.00024 1.01673 0.79466 1.48544 1.30321 1.43307 1.12672 1.20959 0.82778 0.79154 0.86279 1.90624 1.70870 1.67533 1.16376 1.20878 0.86070 0.98098 0.89542 0.87914 1.21701 0.99760 0.91805 0.99920 1.18911 0.93249 0.94054 0.93958 1.21596 0.97442 1.05327 1.33410 0.91898 1.25874 0.95072 1.01784 0.96551 1.70101 1.07055 1.38682 1.41127 0.85522 0.78892 0.79396 0.77691 1.20174 1.21007 1.18560 1.44382 1.26052 1.20553 1.43171 1.18113 0.79697 0.82797 0.78731 1.90830 1.77694 1.25193 1.54332 1.86321 1.37808 1.49160 1.55254 1.22522 0.85451 0.86401 0.97221 1.22477 1.01154 1.02993 0.97040 1.21890 0.97547 1.03240 0.96449 1.22436 1.02388 0.96920 1.01500 1.22209 0.86960 0.94444 0.98191 0.90349 0.91901 0.92775 0.90067 0.87060 0.90321 0.90470 0.89469 0.91609 0.98148 0.98476 0.92877 0.74976 0.92571 0.88300 0.92157 0.91238 0.87232 0.91530 0.92413 0.88306 0.92385 0.92672 0.91910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.15 71.98 0.66 -1.02 16 2 C -0.09 -1.48 3.54 -9.60 -0.03 -1.51 16 3 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 4 C -0.12 -1.90 6.54 31.99 0.21 -1.69 16 5 C 0.08 1.94 6.35 86.86 0.55 2.49 16 6 N -0.62 -18.16 3.33 -811.78 -2.70 -20.86 16 7 C 0.52 19.22 7.00 87.66 0.61 19.84 16 8 O -0.57 -24.60 16.97 -3.02 -0.05 -24.65 16 9 C 0.16 6.08 1.69 44.24 0.07 6.16 16 10 H 0.10 3.94 6.60 -2.39 -0.02 3.92 16 11 C -0.09 -3.71 4.64 30.59 0.14 -3.56 16 12 C 0.04 1.77 4.86 29.85 0.15 1.91 16 13 C -0.54 -29.21 9.11 25.60 0.23 -28.98 16 14 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 15 C 0.01 0.30 5.46 84.65 0.46 0.76 16 16 N -0.93 -55.12 13.29 21.45 0.28 -54.83 16 17 Si 0.96 43.04 29.54 68.60 2.03 45.06 16 18 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 19 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 20 H -0.26 -11.11 7.11 99.48 0.71 -10.41 16 21 N -0.68 -26.49 4.18 -573.72 -2.40 -28.89 16 22 C 0.65 25.49 8.01 129.79 1.04 26.53 16 23 O -0.59 -24.04 11.54 19.82 0.23 -23.81 16 24 O -0.37 -12.98 9.94 -55.40 -0.55 -13.53 16 25 C 0.12 3.26 1.13 -10.79 -0.01 3.25 16 26 C -0.18 -4.82 8.37 71.98 0.60 -4.22 16 27 C -0.13 -2.62 8.85 71.98 0.64 -1.98 16 28 C -0.18 -4.49 8.37 71.98 0.60 -3.89 16 29 C 0.10 2.51 6.48 86.74 0.56 3.08 16 30 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.05 0.74 8.10 -2.39 -0.02 0.72 16 33 H 0.08 1.32 8.05 -2.39 -0.02 1.30 16 34 H 0.11 1.25 8.14 -2.38 -0.02 1.23 16 35 H 0.08 1.96 6.99 -2.39 -0.02 1.95 16 36 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.09 3.19 7.74 -2.39 -0.02 3.17 16 38 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 39 H 0.00 0.01 7.76 -2.39 -0.02 -0.01 16 40 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 41 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 42 H 0.41 15.48 8.71 -92.71 -0.81 14.67 16 43 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 44 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.06 1.99 5.88 -2.39 -0.01 1.97 16 46 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 47 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 48 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 49 H 0.06 1.85 5.88 -2.39 -0.01 1.83 16 50 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 51 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 52 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 53 H 0.06 1.57 7.79 -2.38 -0.02 1.55 16 Total: -1.00 -72.97 421.34 3.40 -69.56 By element: Atomic # 1 Polarization: 34.71 SS G_CDS: 0.07 Total: 34.79 kcal Atomic # 6 Polarization: 10.67 SS G_CDS: 6.49 Total: 17.16 kcal Atomic # 7 Polarization: -99.77 SS G_CDS: -4.81 Total: -104.58 kcal Atomic # 8 Polarization: -61.61 SS G_CDS: -0.37 Total: -61.98 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.06 kcal Total: -72.97 3.40 -69.56 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496721544.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.271 kcal (2) G-P(sol) polarization free energy of solvation -72.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds