Wall clock time and date at job start Tue Mar 31 2020 23:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 110.63901 * 2 1 4 4 C 1.55155 * 110.71934 * 123.14368 * 2 1 3 5 5 C 1.54909 * 101.57777 * 153.86433 * 4 2 1 6 6 N 1.47423 * 104.83638 * 322.98879 * 5 4 2 7 7 C 1.34769 * 125.65074 * 204.09387 * 6 5 4 8 8 O 1.21284 * 120.00162 * 180.02562 * 7 6 5 9 9 C 1.50701 * 120.00250 * 0.02562 * 7 6 5 10 10 H 1.09000 * 109.46801 * 59.99961 * 9 7 6 11 11 C 1.53007 * 109.47050 * 300.00510 * 9 7 6 12 12 C 1.52998 * 109.46873 * 174.99536 * 11 9 7 13 13 C 1.50699 * 109.46700 * 179.97438 * 12 11 9 14 14 H 1.07999 * 120.00803 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99889 * 180.02562 * 13 12 11 16 16 N 1.31520 * 120.00186 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 120.00030 * 0.02562 * 15 13 12 18 18 H 1.48506 * 109.47297 * 89.99863 * 17 15 13 19 19 H 1.48503 * 109.47261 * 330.00044 * 17 15 13 20 20 H 1.48500 * 109.47454 * 210.00037 * 17 15 13 21 21 N 1.46494 * 109.47387 * 180.02562 * 9 7 6 22 22 C 1.34780 * 119.99643 * 274.99813 * 21 9 7 23 23 O 1.21510 * 120.00089 * 0.02562 * 22 21 9 24 24 O 1.34645 * 119.99700 * 180.02562 * 22 21 9 25 25 C 1.45197 * 116.99874 * 180.02562 * 24 22 21 26 26 C 1.53006 * 109.47017 * 60.00007 * 25 24 22 27 27 C 1.53000 * 109.47135 * 179.97438 * 25 24 22 28 28 C 1.52995 * 109.47340 * 300.00297 * 25 24 22 29 29 C 1.47028 * 108.69870 * 24.35511 * 6 5 4 30 30 H 1.09000 * 109.47170 * 298.31019 * 1 2 3 31 31 H 1.08994 * 109.47500 * 58.31204 * 1 2 3 32 32 H 1.09000 * 109.47008 * 178.31114 * 1 2 3 33 33 H 1.09001 * 111.00288 * 35.78913 * 4 2 1 34 34 H 1.09000 * 111.03441 * 271.95274 * 4 2 1 35 35 H 1.08996 * 110.36810 * 204.14909 * 5 4 2 36 36 H 1.09005 * 110.46007 * 81.87532 * 5 4 2 37 37 H 1.09004 * 109.47180 * 54.99632 * 11 9 7 38 38 H 1.08997 * 109.46702 * 294.99803 * 11 9 7 39 39 H 1.09004 * 109.47139 * 60.00071 * 12 11 9 40 40 H 1.08997 * 109.47675 * 299.99671 * 12 11 9 41 41 H 0.96998 * 120.00124 * 180.02562 * 16 15 13 42 42 H 0.97001 * 120.00494 * 95.00495 * 21 9 7 43 43 H 1.09004 * 109.47043 * 59.99995 * 26 25 24 44 44 H 1.09000 * 109.47152 * 179.97438 * 26 25 24 45 45 H 1.08998 * 109.47180 * 299.99762 * 26 25 24 46 46 H 1.08995 * 109.46711 * 59.99772 * 27 25 24 47 47 H 1.08998 * 109.46762 * 180.02562 * 27 25 24 48 48 H 1.09000 * 109.46757 * 300.00162 * 27 25 24 49 49 H 1.08998 * 109.47347 * 59.99345 * 28 25 24 50 50 H 1.09002 * 109.47780 * 179.97438 * 28 25 24 51 51 H 1.09001 * 109.47103 * 300.00195 * 28 25 24 52 52 H 1.09006 * 109.88036 * 118.12878 * 29 6 5 53 53 H 1.08994 * 109.88362 * 239.29156 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0790 -0.7934 1.2151 5 6 3.4633 -1.2486 0.6895 6 7 3.2445 -1.5520 -0.7365 7 6 3.9922 -2.3860 -1.4858 8 8 3.7192 -2.5607 -2.6546 9 6 5.1677 -3.1017 -0.8716 10 1 4.8227 -3.7260 -0.0474 11 6 6.1729 -2.0744 -0.3471 12 6 7.3047 -2.7968 0.3863 13 6 8.2951 -1.7850 0.9024 14 1 8.1334 -0.7320 0.7255 15 6 9.4080 -2.2036 1.6006 16 7 10.2721 -1.3206 2.0515 17 14 9.6883 -4.0250 1.9061 18 1 10.4805 -4.5983 0.7885 19 1 8.3787 -4.7199 1.9920 20 1 10.4286 -4.2050 3.1808 21 7 5.8118 -3.9414 -1.8845 22 6 5.3466 -5.1833 -2.1253 23 8 4.3927 -5.6061 -1.5026 24 8 5.9390 -5.9553 -3.0559 25 6 5.3845 -7.2812 -3.2626 26 6 3.9227 -7.1605 -3.6983 27 6 6.1822 -8.0038 -4.3499 28 6 5.4636 -8.0762 -1.9578 29 6 2.0792 -0.7890 -1.2074 30 1 -0.3633 0.4874 0.9047 31 1 -0.3634 0.5398 -0.8744 32 1 -0.3633 -1.0272 -0.0303 33 1 1.4451 -1.6512 1.4402 34 1 2.1850 -0.1489 2.0877 35 1 3.7961 -2.1405 1.2203 36 1 4.1946 -0.4478 0.7991 37 1 5.6712 -1.3932 0.3403 38 1 6.5844 -1.5090 -1.1832 39 1 7.8065 -3.4780 -0.3010 40 1 6.8933 -3.3622 1.2225 41 1 11.0552 -1.6151 2.5423 42 1 6.5732 -3.6038 -2.3818 43 1 3.8663 -6.5940 -4.6279 44 1 3.5066 -8.1558 -3.8539 45 1 3.3541 -6.6455 -2.9240 46 1 7.2236 -8.0898 -4.0399 47 1 5.7656 -8.9990 -4.5054 48 1 6.1253 -7.4372 -5.2794 49 1 4.8951 -7.5612 -1.1835 50 1 5.0469 -9.0715 -2.1128 51 1 6.5049 -8.1622 -1.6473 52 1 2.3813 -0.1002 -1.9963 53 1 1.3155 -1.4713 -1.5805 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496721545.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:16 Heat of formation + Delta-G solvation = -150.811779 kcal Electronic energy + Delta-G solvation = -31749.722806 eV Core-core repulsion = 27620.220858 eV Total energy + Delta-G solvation = -4129.501948 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.07711 -41.20093 -39.11042 -38.14941 -36.91681 -35.34946 -34.81687 -34.07091 -32.92472 -30.58637 -29.92050 -28.37695 -28.30731 -27.35310 -25.68043 -24.09889 -23.48130 -22.13907 -21.25337 -21.12057 -20.51935 -19.39131 -18.99934 -18.12829 -17.93478 -17.32065 -17.07459 -16.72404 -16.28880 -16.15450 -15.56152 -15.46870 -15.28153 -14.93621 -14.79961 -14.66175 -14.45051 -14.25765 -14.07617 -13.71998 -13.59580 -13.41516 -13.35500 -13.17302 -12.93335 -12.91833 -12.87817 -12.74916 -12.65501 -12.54900 -12.34457 -12.13477 -12.03782 -11.81735 -11.71616 -11.57395 -11.52238 -11.42046 -11.36110 -11.25417 -11.14355 -10.74391 -10.18392 -9.73435 -8.27076 -6.30031 1.03854 1.36096 1.38854 1.44931 1.48663 1.64135 2.03554 2.36380 3.09039 3.10751 3.30911 3.63065 3.68669 3.74046 3.77469 3.79326 3.92620 3.93525 3.97971 4.26981 4.34762 4.48189 4.55183 4.56026 4.59951 4.62355 4.63543 4.73663 4.74664 4.77661 4.82062 4.85846 4.86141 4.92900 4.96401 4.99849 5.07657 5.14032 5.15762 5.23215 5.27514 5.33549 5.35515 5.36733 5.46384 5.46955 5.52680 5.64369 6.28306 6.30589 6.35705 6.77779 6.98685 7.27643 7.34612 8.89036 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.005847 B = 0.005316 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4787.628076 B = 5265.997798 C = 9343.289297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.096 4.096 3 H 0.097 0.903 4 C -0.121 4.121 5 C 0.081 3.919 6 N -0.614 5.614 7 C 0.518 3.482 8 O -0.574 6.574 9 C 0.159 3.841 10 H 0.112 0.888 11 C -0.099 4.099 12 C -0.004 4.004 13 C -0.523 4.523 14 H 0.043 0.957 15 C 0.014 3.986 16 N -0.947 5.947 17 Si 0.936 3.064 18 H -0.271 1.271 19 H -0.251 1.251 20 H -0.285 1.285 21 N -0.685 5.685 22 C 0.656 3.344 23 O -0.590 6.590 24 O -0.370 6.370 25 C 0.121 3.879 26 C -0.176 4.176 27 C -0.134 4.134 28 C -0.180 4.180 29 C 0.106 3.894 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.079 0.921 34 H 0.110 0.890 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.100 0.900 38 H 0.065 0.935 39 H 0.017 0.983 40 H 0.023 0.977 41 H 0.265 0.735 42 H 0.415 0.585 43 H 0.055 0.945 44 H 0.097 0.903 45 H 0.056 0.944 46 H 0.068 0.932 47 H 0.108 0.892 48 H 0.067 0.933 49 H 0.060 0.940 50 H 0.097 0.903 51 H 0.059 0.941 52 H 0.059 0.941 53 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.655 -6.457 -6.199 19.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.115 4.115 3 H 0.116 0.884 4 C -0.158 4.158 5 C -0.041 4.041 6 N -0.348 5.348 7 C 0.305 3.695 8 O -0.454 6.454 9 C 0.051 3.949 10 H 0.130 0.870 11 C -0.137 4.137 12 C -0.042 4.042 13 C -0.561 4.561 14 H 0.061 0.939 15 C -0.183 4.183 16 N -0.587 5.587 17 Si 0.761 3.239 18 H -0.197 1.197 19 H -0.175 1.175 20 H -0.211 1.211 21 N -0.343 5.343 22 C 0.409 3.591 23 O -0.481 6.481 24 O -0.285 6.285 25 C 0.085 3.915 26 C -0.233 4.233 27 C -0.191 4.191 28 C -0.237 4.237 29 C -0.017 4.017 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.098 0.902 34 H 0.128 0.872 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.118 0.882 38 H 0.084 0.916 39 H 0.036 0.964 40 H 0.041 0.959 41 H 0.074 0.926 42 H 0.252 0.748 43 H 0.075 0.925 44 H 0.115 0.885 45 H 0.075 0.925 46 H 0.087 0.913 47 H 0.126 0.874 48 H 0.086 0.914 49 H 0.079 0.921 50 H 0.115 0.885 51 H 0.078 0.922 52 H 0.078 0.922 53 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -18.061 -6.881 -6.511 20.394 hybrid contribution 0.975 -0.277 -0.062 1.016 sum -17.085 -7.158 -6.572 19.655 Atomic orbital electron populations 1.21728 0.92467 1.02177 1.03109 1.22239 0.97277 0.99424 0.92514 0.88428 1.22907 0.93751 1.00873 0.98308 1.22824 0.99857 1.01994 0.79413 1.48520 1.30092 1.43624 1.12551 1.20982 0.83778 0.78763 0.85945 1.90641 1.71748 1.65053 1.17958 1.20876 0.91591 0.92610 0.89790 0.87003 1.21783 0.95026 0.96238 1.00653 1.19469 0.93578 0.95580 0.95562 1.21354 1.06406 0.94113 1.34205 0.93861 1.25806 0.95662 1.01707 0.95155 1.70039 1.13417 1.36005 1.39266 0.85865 0.79291 0.80947 0.77790 1.19688 1.17458 1.21102 1.44346 1.35590 1.12090 1.42239 1.18088 0.80458 0.81733 0.78778 1.90837 1.29758 1.74030 1.53466 1.86316 1.58382 1.29285 1.54523 1.22499 0.94490 0.77110 0.97433 1.22437 0.95140 1.04117 1.01623 1.21887 1.00365 1.00626 0.96247 1.22480 1.02780 1.01475 0.96957 1.22180 0.87008 0.94280 0.98203 0.90411 0.91946 0.92914 0.90213 0.87198 0.90003 0.89743 0.88178 0.91608 0.96430 0.95901 0.92570 0.74802 0.92542 0.88466 0.92505 0.91292 0.87384 0.91355 0.92113 0.88470 0.92171 0.92228 0.92456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.15 71.98 0.66 -1.00 16 2 C -0.10 -1.47 3.54 -9.60 -0.03 -1.51 16 3 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 4 C -0.12 -1.85 6.54 31.99 0.21 -1.64 16 5 C 0.08 1.77 5.14 86.86 0.45 2.21 16 6 N -0.61 -17.06 3.32 -811.77 -2.70 -19.75 16 7 C 0.52 18.00 7.25 87.66 0.64 18.64 16 8 O -0.57 -23.77 16.65 -3.04 -0.05 -23.82 16 9 C 0.16 5.42 1.73 44.25 0.08 5.50 16 10 H 0.11 3.85 7.28 -2.39 -0.02 3.83 16 11 C -0.10 -3.50 4.55 30.60 0.14 -3.36 16 12 C 0.00 -0.19 3.93 29.85 0.12 -0.07 16 13 C -0.52 -28.03 9.66 25.60 0.25 -27.78 16 14 H 0.04 2.52 7.99 -2.91 -0.02 2.50 16 15 C 0.01 0.79 5.47 84.65 0.46 1.25 16 16 N -0.95 -57.19 13.96 21.45 0.30 -56.89 16 17 Si 0.94 43.24 27.47 68.60 1.88 45.12 16 18 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 19 H -0.25 -10.91 6.54 99.48 0.65 -10.25 16 20 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 21 N -0.68 -24.05 4.06 -573.71 -2.33 -26.38 16 22 C 0.66 23.90 7.89 129.79 1.02 24.92 16 23 O -0.59 -23.09 11.54 19.81 0.23 -22.86 16 24 O -0.37 -12.05 9.94 -55.54 -0.55 -12.60 16 25 C 0.12 3.08 1.13 -10.79 -0.01 3.06 16 26 C -0.18 -4.42 8.37 71.98 0.60 -3.81 16 27 C -0.13 -2.40 8.85 71.98 0.64 -1.76 16 28 C -0.18 -4.41 8.37 71.98 0.60 -3.81 16 29 C 0.11 2.46 6.48 86.73 0.56 3.02 16 30 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.05 0.70 8.10 -2.39 -0.02 0.68 16 33 H 0.08 1.21 8.05 -2.39 -0.02 1.19 16 34 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.08 1.82 7.41 -2.39 -0.02 1.81 16 36 H 0.08 1.83 6.98 -2.38 -0.02 1.81 16 37 H 0.10 3.25 4.88 -2.39 -0.01 3.24 16 38 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 39 H 0.02 0.76 7.18 -2.39 -0.02 0.74 16 40 H 0.02 0.98 7.20 -2.39 -0.02 0.96 16 41 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 42 H 0.42 13.66 8.71 -92.71 -0.81 12.86 16 43 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 45 H 0.06 1.81 5.88 -2.39 -0.01 1.80 16 46 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 48 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 49 H 0.06 1.86 5.88 -2.39 -0.01 1.84 16 50 H 0.10 1.75 8.14 -2.39 -0.02 1.74 16 51 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 52 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 53 H 0.06 1.43 7.79 -2.39 -0.02 1.41 16 Total: -1.00 -73.96 413.22 3.18 -70.77 By element: Atomic # 1 Polarization: 32.55 SS G_CDS: 0.03 Total: 32.58 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: 6.37 Total: 13.85 kcal Atomic # 7 Polarization: -98.30 SS G_CDS: -4.73 Total: -103.03 kcal Atomic # 8 Polarization: -58.92 SS G_CDS: -0.37 Total: -59.29 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 1.88 Total: 45.12 kcal Total: -73.96 3.18 -70.77 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496721545.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.040 kcal (2) G-P(sol) polarization free energy of solvation -73.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds