Wall clock time and date at job start Tue Mar 31 2020 23:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 110.41649 * 2 1 4 4 C 1.54907 * 110.36657 * 237.70634 * 2 1 3 5 5 C 1.55155 * 101.58383 * 204.15344 * 4 2 1 6 6 H 1.08998 * 110.71769 * 277.13840 * 5 4 2 7 7 C 1.52994 * 110.72348 * 153.86012 * 5 4 2 8 8 N 1.46497 * 109.47309 * 180.02562 * 7 5 4 9 9 C 1.34780 * 120.00323 * 180.02562 * 8 7 5 10 10 O 1.21511 * 119.99872 * 0.02562 * 9 8 7 11 11 O 1.34631 * 120.00134 * 180.02562 * 9 8 7 12 12 C 1.45202 * 117.00081 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47288 * 59.99744 * 12 11 9 14 14 C 1.53000 * 109.47234 * 180.02562 * 12 11 9 15 15 C 1.53004 * 109.47150 * 299.99981 * 12 11 9 16 16 C 1.54330 * 102.94292 * 35.49718 * 5 4 2 17 17 N 1.47026 * 107.26840 * 337.81024 * 16 5 4 18 18 C 1.34780 * 125.64391 * 178.97562 * 17 16 5 19 19 O 1.21276 * 119.99621 * 179.97438 * 18 17 16 20 20 C 1.50700 * 120.00219 * 359.97438 * 18 17 16 21 21 C 1.52998 * 109.46913 * 180.02562 * 20 18 17 22 22 C 1.50700 * 109.46913 * 179.97438 * 21 20 18 23 23 H 1.08002 * 119.99914 * 359.97438 * 22 21 20 24 24 C 1.37877 * 120.00166 * 179.97438 * 22 21 20 25 25 N 1.31510 * 119.99895 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00191 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47194 * 0.02562 * 26 24 22 28 28 H 1.48508 * 109.47187 * 120.00069 * 26 24 22 29 29 H 1.48502 * 109.47593 * 240.00307 * 26 24 22 30 30 H 1.09001 * 109.46828 * 299.15852 * 1 2 3 31 31 H 1.08997 * 109.47348 * 59.15574 * 1 2 3 32 32 H 1.08991 * 109.47281 * 179.16182 * 1 2 3 33 33 H 1.09001 * 111.00336 * 322.22367 * 4 2 1 34 34 H 1.09000 * 111.00618 * 86.07185 * 4 2 1 35 35 H 1.08997 * 109.47343 * 300.02364 * 7 5 4 36 36 H 1.09004 * 109.47006 * 60.02591 * 7 5 4 37 37 H 0.96998 * 119.99925 * 0.02562 * 8 7 5 38 38 H 1.09006 * 109.47071 * 59.99889 * 13 12 11 39 39 H 1.08992 * 109.47084 * 180.02562 * 13 12 11 40 40 H 1.09000 * 109.46861 * 300.00411 * 13 12 11 41 41 H 1.08997 * 109.47313 * 59.99976 * 14 12 11 42 42 H 1.09006 * 109.47178 * 179.97438 * 14 12 11 43 43 H 1.09007 * 109.47076 * 299.99462 * 14 12 11 44 44 H 1.09000 * 109.47096 * 59.99530 * 15 12 11 45 45 H 1.08992 * 109.47281 * 180.02562 * 15 12 11 46 46 H 1.09010 * 109.46616 * 300.00209 * 15 12 11 47 47 H 1.08998 * 109.88224 * 218.39343 * 16 5 4 48 48 H 1.08998 * 109.88221 * 97.22736 * 16 5 4 49 49 H 1.09008 * 109.46861 * 300.00115 * 20 18 17 50 50 H 1.08997 * 109.46822 * 59.99853 * 20 18 17 51 51 H 1.08994 * 109.47127 * 299.99579 * 21 20 18 52 52 H 1.08998 * 109.47271 * 59.99811 * 21 20 18 53 53 H 0.97002 * 120.00174 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 6 2.0691 -0.7759 -1.2276 5 6 3.4777 -1.1998 -0.7342 6 1 4.1944 -0.3902 -0.8722 7 6 3.9447 -2.4667 -1.4535 8 7 5.2747 -2.8422 -0.9674 9 6 5.8900 -3.9341 -1.4632 10 8 5.3417 -4.6068 -2.3137 11 8 7.1120 -4.2795 -1.0160 12 6 7.7146 -5.4669 -1.5951 13 6 7.8681 -5.2762 -3.1053 14 6 9.0904 -5.6986 -0.9672 15 6 6.8197 -6.6777 -1.3224 16 6 3.2494 -1.4768 0.7667 17 7 2.0431 -0.7383 1.1683 18 6 1.4973 -0.7362 2.4006 19 8 0.4966 -0.0869 2.6194 20 6 2.1304 -1.5407 3.5066 21 6 1.3198 -1.3662 4.7924 22 6 1.9526 -2.1711 5.8982 23 1 2.8435 -2.7496 5.7032 24 6 1.3941 -2.1690 7.1588 25 7 0.3090 -1.4650 7.3961 26 14 2.1780 -3.1673 8.5293 27 1 3.3802 -3.8658 8.0075 28 1 2.5744 -2.2613 9.6372 29 1 1.2032 -4.1680 9.0328 30 1 -0.3633 0.5007 0.8975 31 1 -0.3634 0.5269 -0.8823 32 1 -0.3633 -1.0275 -0.0150 33 1 1.4511 -1.6480 -1.4408 34 1 2.1397 -0.1264 -2.1001 35 1 3.2432 -3.2769 -1.2548 36 1 3.9894 -2.2798 -2.5265 37 1 5.7125 -2.3050 -0.2888 38 1 8.5056 -4.4136 -3.2997 39 1 8.3200 -6.1677 -3.5400 40 1 6.8877 -5.1114 -3.5523 41 1 8.9806 -5.8347 0.1086 42 1 9.5426 -6.5902 -1.4016 43 1 9.7282 -4.8361 -1.1612 44 1 5.8393 -6.5129 -1.7693 45 1 7.2722 -7.5691 -1.7566 46 1 6.7103 -6.8135 -0.2463 47 1 4.1065 -1.1279 1.3427 48 1 3.1013 -2.5445 0.9283 49 1 2.1452 -2.5941 3.2269 50 1 3.1507 -1.1937 3.6698 51 1 1.3047 -0.3129 5.0722 52 1 0.2996 -1.7134 4.6287 53 1 -0.0841 -1.4638 8.2829 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496791351.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:01 Heat of formation + Delta-G solvation = -158.816696 kcal Electronic energy + Delta-G solvation = -30315.376801 eV Core-core repulsion = 26185.527734 eV Total energy + Delta-G solvation = -4129.849067 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.79430 -41.26398 -39.15312 -38.14012 -36.02055 -35.59290 -34.91576 -33.58120 -32.52408 -32.13817 -28.31804 -28.25720 -27.92184 -27.35434 -26.59969 -24.26914 -23.26538 -22.06980 -21.77081 -20.84970 -19.80023 -19.11115 -18.69953 -17.96634 -17.57587 -17.34541 -17.07368 -16.52281 -16.37206 -16.18945 -15.68637 -15.51244 -15.28386 -14.96969 -14.58690 -14.44508 -14.34223 -14.09853 -13.96845 -13.71569 -13.42985 -13.30679 -13.15838 -13.08674 -12.91233 -12.86884 -12.83061 -12.81220 -12.65294 -12.45837 -12.42224 -12.31507 -12.09400 -11.97889 -11.80841 -11.70059 -11.61287 -11.33944 -11.28239 -11.06818 -10.59216 -10.44637 -10.16908 -9.60533 -8.19576 -6.33692 1.22339 1.40745 1.42242 1.55526 1.70980 1.81824 2.03397 2.41908 3.13371 3.14832 3.42789 3.50283 3.72642 3.79539 3.84581 3.99333 4.03288 4.15430 4.25311 4.30561 4.45256 4.47160 4.48060 4.56631 4.65613 4.65731 4.67876 4.71283 4.78309 4.79717 4.81172 4.87022 4.92092 4.92564 5.00780 5.02740 5.10202 5.13958 5.25911 5.30511 5.32346 5.34062 5.41673 5.47494 5.60765 5.63816 5.65269 5.83328 6.15993 6.44003 6.53387 6.84938 7.29747 7.36818 7.39106 8.93330 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.008412 B = 0.002659 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3327.918249 B =10527.141470 C =13482.681884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.124 3.876 3 H 0.081 0.919 4 C -0.107 4.107 5 C -0.094 4.094 6 H 0.122 0.878 7 C 0.154 3.846 8 N -0.702 5.702 9 C 0.644 3.356 10 O -0.594 6.594 11 O -0.371 6.371 12 C 0.126 3.874 13 C -0.178 4.178 14 C -0.138 4.138 15 C -0.182 4.182 16 C 0.094 3.906 17 N -0.620 5.620 18 C 0.524 3.476 19 O -0.579 6.579 20 C -0.113 4.113 21 C 0.045 3.955 22 C -0.542 4.542 23 H 0.074 0.926 24 C -0.007 4.007 25 N -0.937 5.937 26 Si 0.973 3.027 27 H -0.253 1.253 28 H -0.279 1.279 29 H -0.280 1.280 30 H 0.047 0.953 31 H 0.087 0.913 32 H 0.042 0.958 33 H 0.081 0.919 34 H 0.119 0.881 35 H 0.063 0.937 36 H 0.087 0.913 37 H 0.417 0.583 38 H 0.064 0.936 39 H 0.088 0.912 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.100 0.900 43 H 0.071 0.929 44 H 0.063 0.937 45 H 0.089 0.911 46 H 0.057 0.943 47 H 0.085 0.915 48 H 0.069 0.931 49 H 0.093 0.907 50 H 0.099 0.901 51 H -0.017 1.017 52 H -0.019 1.019 53 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.557 -4.924 -25.934 32.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.022 3.978 3 H 0.099 0.901 4 C -0.145 4.145 5 C -0.113 4.113 6 H 0.140 0.860 7 C 0.032 3.968 8 N -0.362 5.362 9 C 0.397 3.603 10 O -0.485 6.485 11 O -0.285 6.285 12 C 0.090 3.910 13 C -0.235 4.235 14 C -0.195 4.195 15 C -0.239 4.239 16 C -0.028 4.028 17 N -0.355 5.355 18 C 0.314 3.686 19 O -0.459 6.459 20 C -0.153 4.153 21 C 0.007 3.993 22 C -0.580 4.580 23 H 0.092 0.908 24 C -0.204 4.204 25 N -0.577 5.577 26 Si 0.797 3.203 27 H -0.176 1.176 28 H -0.205 1.205 29 H -0.206 1.206 30 H 0.066 0.934 31 H 0.105 0.895 32 H 0.061 0.939 33 H 0.099 0.901 34 H 0.138 0.862 35 H 0.082 0.918 36 H 0.105 0.895 37 H 0.254 0.746 38 H 0.083 0.917 39 H 0.106 0.894 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.119 0.881 43 H 0.090 0.910 44 H 0.082 0.918 45 H 0.107 0.893 46 H 0.076 0.924 47 H 0.103 0.897 48 H 0.087 0.913 49 H 0.112 0.888 50 H 0.118 0.882 51 H 0.001 0.999 52 H -0.001 1.001 53 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 17.682 -4.928 -26.046 31.864 hybrid contribution -0.307 -0.087 1.488 1.522 sum 17.374 -5.015 -24.559 30.498 Atomic orbital electron populations 1.22090 0.95258 1.01774 1.02904 1.22112 0.94521 0.96312 0.84830 0.90094 1.22848 0.93974 1.01016 0.96659 1.22413 0.98870 0.98052 0.92001 0.86038 1.21329 0.80778 0.95564 0.99154 1.44735 1.19615 1.26901 1.44942 1.18296 0.80309 0.81614 0.80042 1.90899 1.67500 1.54495 1.35608 1.86317 1.30405 1.47265 1.64560 1.22366 0.93586 0.81170 0.93919 1.22456 1.03418 1.03558 0.94055 1.21893 0.92131 1.03773 1.01674 1.22491 1.01225 0.97879 1.02297 1.22379 0.87195 0.96819 0.96454 1.48685 1.29031 1.49054 1.08751 1.20923 0.83400 0.81170 0.83071 1.90609 1.27371 1.45391 1.82520 1.21589 1.00849 0.99973 0.92864 1.18668 0.93918 0.95026 0.91689 1.21713 1.12067 1.28876 0.95302 0.90807 1.26135 0.95424 0.96827 1.02032 1.70182 1.22304 1.42557 1.22671 0.85279 0.78750 0.78135 0.78123 1.17632 1.20462 1.20625 0.93353 0.89453 0.93885 0.90083 0.86231 0.91819 0.89470 0.74606 0.91739 0.89351 0.91725 0.91566 0.88140 0.91002 0.91796 0.89263 0.92387 0.89679 0.91303 0.88839 0.88238 0.99852 1.00105 0.92827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.28 8.71 71.98 0.63 -3.65 16 2 C 0.12 2.72 3.77 45.47 0.17 2.89 16 3 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 4 C -0.11 -1.30 5.95 31.98 0.19 -1.11 16 5 C -0.09 -1.02 3.02 -9.61 -0.03 -1.04 16 6 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 7 C 0.15 1.89 4.99 86.38 0.43 2.32 16 8 N -0.70 -9.86 5.40 -590.87 -3.19 -13.06 16 9 C 0.64 12.92 8.06 129.79 1.05 13.96 16 10 O -0.59 -14.77 11.88 19.81 0.24 -14.53 16 11 O -0.37 -7.01 9.94 -55.41 -0.55 -7.56 16 12 C 0.13 1.95 1.13 -10.79 -0.01 1.94 16 13 C -0.18 -2.55 8.37 71.98 0.60 -1.95 16 14 C -0.14 -1.40 8.85 71.98 0.64 -0.76 16 15 C -0.18 -2.99 8.37 71.98 0.60 -2.39 16 16 C 0.09 1.71 5.77 86.73 0.50 2.21 16 17 N -0.62 -17.18 3.24 -788.15 -2.56 -19.73 16 18 C 0.52 20.91 7.63 87.66 0.67 21.58 16 19 O -0.58 -28.61 13.64 -3.02 -0.04 -28.65 16 20 C -0.11 -4.72 4.83 29.85 0.14 -4.58 16 21 C 0.04 2.54 4.26 29.85 0.13 2.66 16 22 C -0.54 -31.32 9.11 25.60 0.23 -31.08 16 23 H 0.07 3.91 7.74 -2.91 -0.02 3.88 16 24 C -0.01 -0.40 5.46 84.66 0.46 0.06 16 25 N -0.94 -60.05 13.29 21.45 0.28 -59.77 16 26 Si 0.97 44.73 29.54 68.60 2.03 46.76 16 27 H -0.25 -10.72 7.11 99.48 0.71 -10.01 16 28 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 29 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 30 H 0.05 1.72 5.89 -2.39 -0.01 1.70 16 31 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.08 1.07 7.96 -2.39 -0.02 1.06 16 34 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.06 0.99 8.06 -2.39 -0.02 0.97 16 36 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.42 4.26 8.44 -92.71 -0.78 3.48 16 38 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 39 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.06 1.26 5.88 -2.39 -0.01 1.25 16 41 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.10 0.61 8.14 -2.38 -0.02 0.59 16 43 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 44 H 0.06 1.39 5.88 -2.39 -0.01 1.37 16 45 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 47 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 48 H 0.07 1.34 7.77 -2.39 -0.02 1.32 16 49 H 0.09 3.56 8.14 -2.38 -0.02 3.54 16 50 H 0.10 3.67 8.14 -2.39 -0.02 3.65 16 51 H -0.02 -1.09 8.10 -2.39 -0.02 -1.10 16 52 H -0.02 -1.26 8.10 -2.39 -0.02 -1.28 16 53 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -83.22 418.92 2.71 -80.51 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: 0.10 Total: 14.99 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: 6.40 Total: 1.04 kcal Atomic # 7 Polarization: -87.09 SS G_CDS: -5.46 Total: -92.56 kcal Atomic # 8 Polarization: -50.38 SS G_CDS: -0.36 Total: -50.74 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -83.22 2.71 -80.51 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496791351.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.306 kcal (2) G-P(sol) polarization free energy of solvation -83.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds