Wall clock time and date at job start Wed Apr 1 2020 00:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.49811 * 2 1 4 4 C 1.53191 * 109.49459 * 239.90128 * 2 1 3 5 5 N 1.46924 * 108.77502 * 185.40980 * 4 2 1 6 6 C 1.34773 * 120.63542 * 233.62980 * 5 4 2 7 7 O 1.21510 * 119.99827 * 359.97438 * 6 5 4 8 8 O 1.34637 * 120.00333 * 179.97438 * 6 5 4 9 9 C 1.45204 * 117.00105 * 180.02562 * 8 6 5 10 10 C 1.52994 * 109.46874 * 60.00181 * 9 8 6 11 11 C 1.52996 * 109.47195 * 180.02562 * 9 8 6 12 12 C 1.53007 * 109.46885 * 300.00429 * 9 8 6 13 13 C 1.46930 * 118.73515 * 53.61502 * 5 4 2 14 14 C 1.53197 * 108.77290 * 306.38493 * 13 5 4 15 15 C 1.53041 * 109.31107 * 54.64248 * 14 13 5 16 16 H 1.08995 * 109.45943 * 178.61567 * 15 14 13 17 17 N 1.46498 * 109.46482 * 58.64758 * 15 14 13 18 18 C 1.34780 * 119.99511 * 84.93186 * 17 15 14 19 19 O 1.21280 * 120.00451 * 0.02562 * 18 17 15 20 20 C 1.50704 * 119.99491 * 180.02562 * 18 17 15 21 21 C 1.53007 * 109.46657 * 180.02562 * 20 18 17 22 22 C 1.50699 * 109.46981 * 179.97438 * 21 20 18 23 23 H 1.07999 * 119.99984 * 0.02562 * 22 21 20 24 24 C 1.37872 * 120.00177 * 179.97438 * 22 21 20 25 25 N 1.31515 * 120.00262 * 180.02562 * 24 22 21 26 26 Si 1.86808 * 119.99884 * 0.02562 * 24 22 21 27 27 H 1.48494 * 109.47104 * 89.99654 * 26 24 22 28 28 H 1.48505 * 109.47109 * 209.99775 * 26 24 22 29 29 H 1.48504 * 109.46957 * 329.99639 * 26 24 22 30 30 H 1.09001 * 109.47002 * 299.93271 * 1 2 3 31 31 H 1.08993 * 109.46955 * 59.93708 * 1 2 3 32 32 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.58940 * 305.20439 * 4 2 1 34 34 H 1.09002 * 109.58693 * 65.62461 * 4 2 1 35 35 H 1.09004 * 109.47213 * 60.00294 * 10 9 8 36 36 H 1.09005 * 109.46763 * 179.97438 * 10 9 8 37 37 H 1.08996 * 109.47700 * 299.99926 * 10 9 8 38 38 H 1.08996 * 109.47234 * 59.99495 * 11 9 8 39 39 H 1.08994 * 109.47092 * 180.02562 * 11 9 8 40 40 H 1.09004 * 109.47022 * 300.00258 * 11 9 8 41 41 H 1.08996 * 109.47214 * 60.00365 * 12 9 8 42 42 H 1.09000 * 109.46361 * 180.02562 * 12 9 8 43 43 H 1.09002 * 109.47245 * 299.99488 * 12 9 8 44 44 H 1.08999 * 109.58433 * 186.60360 * 13 5 4 45 45 H 1.09000 * 109.70786 * 66.24301 * 13 5 4 46 46 H 1.08993 * 109.50022 * 294.68563 * 14 13 5 47 47 H 1.08998 * 109.49135 * 174.58774 * 14 13 5 48 48 H 0.96999 * 120.00549 * 264.94126 * 17 15 14 49 49 H 1.08991 * 109.47631 * 299.99769 * 20 18 17 50 50 H 1.08996 * 109.47126 * 60.00803 * 20 18 17 51 51 H 1.09006 * 109.47366 * 300.00131 * 21 20 18 52 52 H 1.09004 * 109.46955 * 60.00221 * 21 20 18 53 53 H 0.97001 * 119.99893 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0413 -0.7242 -1.2494 5 7 3.5046 -0.8294 -1.1694 6 6 4.2811 -0.3863 -2.1779 7 8 3.7721 0.1056 -3.1656 8 8 5.6208 -0.4886 -2.0910 9 6 6.3942 0.0099 -3.2143 10 6 6.1075 1.5000 -3.4097 11 6 7.8852 -0.1909 -2.9361 12 6 6.0047 -0.7548 -4.4810 13 6 4.1053 -1.4268 0.0311 14 6 3.5709 -0.6946 1.2661 15 6 2.0409 -0.7228 1.2486 16 1 1.6583 -0.2239 2.1389 17 7 1.5783 -2.1127 1.2314 18 6 1.4503 -2.7946 2.3869 19 8 1.7175 -2.2574 3.4409 20 6 0.9750 -4.2246 2.3691 21 6 0.9180 -4.7608 3.8010 22 6 0.4421 -6.1906 3.7834 23 1 0.2046 -6.6691 2.8448 24 6 0.3110 -6.8882 4.9654 25 7 -0.1038 -8.1361 4.9499 26 14 0.7225 -6.0607 6.5888 27 1 -0.4931 -5.4024 7.1310 28 1 1.2066 -7.0793 7.5549 29 1 1.7814 -5.0425 6.3710 30 1 -0.3633 0.5128 0.8906 31 1 -0.3633 0.5148 -0.8894 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6052 -1.7220 -1.2976 34 1 1.7637 -0.1586 -2.1389 35 1 6.3850 2.0447 -2.5072 36 1 6.6885 1.8742 -4.2526 37 1 5.0453 1.6427 -3.6081 38 1 8.0891 -1.2526 -2.7970 39 1 8.4658 0.1836 -3.7791 40 1 8.1629 0.3535 -2.0335 41 1 4.9425 -0.6121 -4.6795 42 1 6.5856 -0.3809 -5.3241 43 1 6.2090 -1.8165 -4.3419 44 1 5.1896 -1.3246 -0.0135 45 1 3.8397 -2.4823 0.0886 46 1 3.9160 0.3392 1.2539 47 1 3.9335 -1.1891 2.1673 48 1 1.3644 -2.5423 0.3884 49 1 -0.0188 -4.2718 1.9241 50 1 1.6654 -4.8297 1.7815 51 1 1.9117 -4.7136 4.2466 52 1 0.2273 -4.1556 4.3883 53 1 -0.1964 -8.6267 5.7816 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496819353.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:29:00 Heat of formation + Delta-G solvation = -155.234260 kcal Electronic energy + Delta-G solvation = -31178.370086 eV Core-core repulsion = 27048.676365 eV Total energy + Delta-G solvation = -4129.693721 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.10389 -41.12788 -39.50292 -37.81107 -35.86437 -35.49828 -34.74762 -33.81116 -33.32344 -32.07881 -28.34033 -28.32130 -28.24948 -27.74169 -26.44620 -23.84028 -23.12121 -22.94695 -21.31311 -20.78312 -19.99914 -19.24392 -18.92449 -17.73897 -17.65613 -17.38351 -16.81050 -16.47103 -16.28101 -16.20888 -15.69832 -15.44446 -15.39659 -14.98523 -14.85666 -14.65168 -14.56946 -14.40330 -14.14422 -13.80371 -13.44538 -13.36455 -13.21784 -13.05155 -12.91593 -12.85059 -12.82639 -12.81726 -12.68173 -12.41168 -12.27820 -12.11157 -12.00181 -11.96652 -11.93433 -11.74642 -11.55118 -11.37390 -11.37174 -11.04432 -10.76670 -10.68616 -10.07533 -9.75869 -8.29998 -6.32659 1.10997 1.34405 1.36472 1.51171 1.73266 1.75775 2.27470 2.36148 2.77333 3.05960 3.51972 3.72433 3.77324 3.78769 3.82560 3.96797 3.99158 4.03226 4.19409 4.22338 4.39888 4.44397 4.51005 4.52767 4.60170 4.63589 4.68143 4.71022 4.76191 4.78592 4.84298 4.86619 4.89496 4.94138 5.00832 5.05441 5.08911 5.12495 5.13267 5.29197 5.29991 5.35459 5.37465 5.46124 5.48436 5.49492 5.58653 5.63965 6.25292 6.26397 6.61650 6.74339 7.25184 7.32754 7.36873 8.85668 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017529 B = 0.002314 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.946922 B =12099.754984 C =12706.870146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.098 4.098 3 H 0.093 0.907 4 C 0.129 3.871 5 N -0.591 5.591 6 C 0.650 3.350 7 O -0.590 6.590 8 O -0.368 6.368 9 C 0.124 3.876 10 C -0.177 4.177 11 C -0.137 4.137 12 C -0.179 4.179 13 C 0.118 3.882 14 C -0.140 4.140 15 C 0.149 3.851 16 H 0.076 0.924 17 N -0.712 5.712 18 C 0.520 3.480 19 O -0.581 6.581 20 C -0.119 4.119 21 C 0.006 3.994 22 C -0.527 4.527 23 H 0.049 0.951 24 C 0.012 3.988 25 N -0.945 5.945 26 Si 0.939 3.061 27 H -0.269 1.269 28 H -0.280 1.280 29 H -0.260 1.260 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.060 0.940 36 H 0.089 0.911 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.101 0.899 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.089 0.911 43 H 0.058 0.942 44 H 0.095 0.905 45 H 0.074 0.926 46 H 0.084 0.916 47 H 0.069 0.931 48 H 0.410 0.590 49 H 0.100 0.900 50 H 0.100 0.900 51 H 0.010 0.990 52 H 0.008 0.992 53 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.767 21.939 -20.014 32.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 H 0.111 0.889 4 C 0.008 3.992 5 N -0.331 5.331 6 C 0.405 3.595 7 O -0.481 6.481 8 O -0.283 6.283 9 C 0.088 3.912 10 C -0.235 4.235 11 C -0.194 4.194 12 C -0.236 4.236 13 C -0.004 4.004 14 C -0.179 4.179 15 C 0.044 3.956 16 H 0.094 0.906 17 N -0.365 5.365 18 C 0.309 3.691 19 O -0.460 6.460 20 C -0.158 4.158 21 C -0.032 4.032 22 C -0.565 4.565 23 H 0.067 0.933 24 C -0.186 4.186 25 N -0.585 5.585 26 Si 0.763 3.237 27 H -0.195 1.195 28 H -0.206 1.206 29 H -0.184 1.184 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.102 0.898 34 H 0.116 0.884 35 H 0.079 0.921 36 H 0.108 0.892 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.120 0.880 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.108 0.892 43 H 0.077 0.923 44 H 0.113 0.887 45 H 0.092 0.908 46 H 0.103 0.897 47 H 0.087 0.913 48 H 0.248 0.752 49 H 0.119 0.881 50 H 0.118 0.882 51 H 0.028 0.972 52 H 0.027 0.973 53 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 12.855 22.343 -19.515 32.331 hybrid contribution -0.183 -0.397 0.660 0.791 sum 12.672 21.947 -18.856 31.587 Atomic orbital electron populations 1.21747 0.92570 1.02932 1.02869 1.21697 0.97422 1.00119 0.92553 0.88859 1.21794 0.76155 1.01963 0.99277 1.47042 1.06443 1.62389 1.17218 1.18116 0.81291 0.77343 0.82709 1.90876 1.74855 1.50401 1.32004 1.86318 1.16708 1.77893 1.47374 1.22399 0.91177 0.94137 0.83488 1.22451 1.03809 0.94017 1.03177 1.21883 0.90031 1.03473 1.03996 1.22463 1.03634 1.00269 0.97212 1.21674 0.98957 0.97187 0.82574 1.22235 0.95682 1.02106 0.97879 1.20944 0.93540 0.82055 0.99014 0.90606 1.46008 1.68274 1.13444 1.08818 1.21048 0.75830 0.88863 0.83396 1.90644 1.51645 1.71169 1.32573 1.21498 1.03462 0.91059 0.99811 1.19208 0.96185 0.93852 0.93943 1.21453 1.43983 0.97111 0.94002 0.93252 1.25821 0.94624 0.95233 1.02901 1.70029 1.48827 1.11108 1.28582 0.85821 0.79640 0.78618 0.79572 1.19466 1.20573 1.18374 0.92335 0.90699 0.91999 0.89758 0.88393 0.92132 0.89213 0.91757 0.91454 0.88011 0.91335 0.91760 0.89188 0.92264 0.88710 0.90758 0.89749 0.91262 0.75246 0.88129 0.88171 0.97152 0.97344 0.92456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.05 71.98 0.65 -1.26 16 2 C -0.10 -1.42 2.67 -10.71 -0.03 -1.45 16 3 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 4 C 0.13 1.96 5.42 86.36 0.47 2.43 16 5 N -0.59 -10.74 2.97 -949.24 -2.82 -13.56 16 6 C 0.65 14.12 7.74 129.79 1.00 15.12 16 7 O -0.59 -14.87 11.29 19.81 0.22 -14.65 16 8 O -0.37 -7.34 8.53 -55.47 -0.47 -7.82 16 9 C 0.12 1.93 1.13 -10.79 -0.01 1.92 16 10 C -0.18 -2.65 8.37 71.98 0.60 -2.04 16 11 C -0.14 -1.40 8.85 71.98 0.64 -0.76 16 12 C -0.18 -2.76 8.37 71.98 0.60 -2.16 16 13 C 0.12 2.08 6.19 86.36 0.53 2.61 16 14 C -0.14 -2.64 5.77 30.67 0.18 -2.46 16 15 C 0.15 2.91 2.21 45.02 0.10 3.01 16 16 H 0.08 1.81 7.58 -2.39 -0.02 1.79 16 17 N -0.71 -15.47 3.60 -442.40 -1.59 -17.06 16 18 C 0.52 16.76 7.79 87.66 0.68 17.45 16 19 O -0.58 -23.70 15.64 -3.03 -0.05 -23.75 16 20 C -0.12 -4.23 5.64 29.85 0.17 -4.07 16 21 C 0.01 0.30 3.33 29.85 0.10 0.39 16 22 C -0.53 -30.03 9.66 25.60 0.25 -29.78 16 23 H 0.05 2.96 7.99 -2.91 -0.02 2.94 16 24 C 0.01 0.69 5.47 84.65 0.46 1.15 16 25 N -0.94 -58.95 13.96 21.45 0.30 -58.65 16 26 Si 0.94 46.41 27.47 68.60 1.88 48.29 16 27 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 28 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 29 H -0.26 -12.67 6.54 99.48 0.65 -12.02 16 30 H 0.06 0.86 8.14 -2.39 -0.02 0.85 16 31 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.06 0.85 7.53 -2.39 -0.02 0.83 16 33 H 0.08 1.08 6.64 -2.39 -0.02 1.06 16 34 H 0.10 1.62 7.00 -2.39 -0.02 1.60 16 35 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 36 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 37 H 0.06 1.29 5.88 -2.39 -0.01 1.28 16 38 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.06 1.33 5.88 -2.39 -0.01 1.31 16 42 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.09 1.64 6.93 -2.39 -0.02 1.62 16 45 H 0.07 1.33 7.74 -2.39 -0.02 1.31 16 46 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 47 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 48 H 0.41 6.85 6.73 -92.71 -0.62 6.22 16 49 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 50 H 0.10 3.26 8.14 -2.39 -0.02 3.24 16 51 H 0.01 0.52 7.16 -2.38 -0.02 0.50 16 52 H 0.01 0.41 7.53 -2.39 -0.02 0.39 16 53 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -74.37 408.77 4.08 -70.29 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: 0.21 Total: 16.79 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: 6.40 Total: 0.11 kcal Atomic # 7 Polarization: -85.16 SS G_CDS: -4.11 Total: -89.27 kcal Atomic # 8 Polarization: -45.91 SS G_CDS: -0.30 Total: -46.21 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 1.88 Total: 48.29 kcal Total: -74.37 4.08 -70.29 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496819353.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.942 kcal (2) G-P(sol) polarization free energy of solvation -74.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds