Wall clock time and date at job start Wed Apr 1 2020 00:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.49701 * 2 1 4 4 C 1.53185 * 109.50064 * 120.06593 * 2 1 3 5 5 N 1.46927 * 108.77797 * 174.61712 * 4 2 1 6 6 C 1.34773 * 120.62932 * 126.36569 * 5 4 2 7 7 O 1.21516 * 120.00324 * 359.73098 * 6 5 4 8 8 O 1.34644 * 120.00016 * 180.02562 * 6 5 4 9 9 C 1.45199 * 117.00135 * 179.72609 * 8 6 5 10 10 C 1.53007 * 109.46977 * 60.00222 * 9 8 6 11 11 C 1.53003 * 109.46980 * 179.97438 * 9 8 6 12 12 C 1.52997 * 109.47110 * 299.99986 * 9 8 6 13 13 C 1.46925 * 118.74030 * 306.64678 * 5 4 2 14 14 C 1.52760 * 109.00887 * 53.30441 * 13 5 4 15 15 C 1.53044 * 109.38425 * 305.59003 * 14 13 5 16 16 H 1.09001 * 109.45992 * 301.21970 * 15 14 13 17 17 N 1.46496 * 109.46107 * 181.25909 * 15 14 13 18 18 C 1.34782 * 120.00201 * 84.93241 * 17 15 14 19 19 O 1.21281 * 119.99577 * 0.02562 * 18 17 15 20 20 C 1.50698 * 119.99936 * 179.97438 * 18 17 15 21 21 C 1.53003 * 109.46627 * 179.97438 * 20 18 17 22 22 C 1.50703 * 109.46936 * 180.02562 * 21 20 18 23 23 H 1.07998 * 120.00024 * 0.02562 * 22 21 20 24 24 C 1.37879 * 119.99910 * 180.02562 * 22 21 20 25 25 N 1.31514 * 120.00203 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 119.99918 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47225 * 59.99909 * 26 24 22 28 28 H 1.48502 * 109.47201 * 179.97438 * 26 24 22 29 29 H 1.48501 * 109.46982 * 299.99882 * 26 24 22 30 30 H 1.09000 * 109.47138 * 299.93078 * 1 2 3 31 31 H 1.09000 * 109.47878 * 59.93664 * 1 2 3 32 32 H 1.09009 * 109.47325 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.58670 * 54.82883 * 4 2 1 34 34 H 1.08998 * 109.58982 * 294.40734 * 4 2 1 35 35 H 1.08994 * 109.46868 * 59.99755 * 10 9 8 36 36 H 1.09004 * 109.46642 * 180.02562 * 10 9 8 37 37 H 1.08996 * 109.46553 * 299.99758 * 10 9 8 38 38 H 1.08999 * 109.46752 * 60.00539 * 11 9 8 39 39 H 1.08999 * 109.46600 * 180.02562 * 11 9 8 40 40 H 1.09002 * 109.47255 * 300.00304 * 11 9 8 41 41 H 1.09007 * 109.47187 * 60.00329 * 12 9 8 42 42 H 1.08999 * 109.47137 * 179.97438 * 12 9 8 43 43 H 1.08991 * 109.47351 * 300.00099 * 12 9 8 44 44 H 1.09000 * 109.59242 * 173.14057 * 13 5 4 45 45 H 1.09006 * 109.58448 * 293.56944 * 13 5 4 46 46 H 1.09001 * 109.56659 * 185.55983 * 14 13 5 47 47 H 1.08996 * 109.35932 * 65.49959 * 14 13 5 48 48 H 0.97007 * 120.00279 * 264.93206 * 17 15 14 49 49 H 1.08994 * 109.47405 * 299.99836 * 20 18 17 50 50 H 1.09004 * 109.47366 * 60.00672 * 20 18 17 51 51 H 1.08996 * 109.47731 * 299.99971 * 21 20 18 52 52 H 1.09005 * 109.47062 * 60.00476 * 21 20 18 53 53 H 0.96998 * 120.00043 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7234 1.2497 5 7 3.5047 -0.8281 1.1700 6 6 4.2807 -0.3841 2.1785 7 8 3.7716 0.1130 3.1635 8 8 5.6205 -0.4858 2.0919 9 6 6.3937 0.0185 3.2127 10 6 6.0050 -0.7404 4.4831 11 6 7.8849 -0.1825 2.9352 12 6 6.1060 1.5094 3.4010 13 6 4.1062 -1.4203 -0.0325 14 6 3.5715 -0.6941 -1.2655 15 6 2.0414 -0.7229 -1.2482 16 1 1.6978 -1.7573 -1.2352 17 7 1.5271 -0.0532 -2.4453 18 6 1.3996 -0.7386 -3.5988 19 8 1.7103 -1.9100 -3.6456 20 6 0.8700 -0.0497 -4.8300 21 6 0.8265 -1.0442 -5.9919 22 6 0.2975 -0.3552 -7.2234 23 1 0.0204 0.6878 -7.1816 24 6 0.1672 -1.0564 -8.4034 25 7 0.5042 -2.3266 -8.4542 26 14 -0.4879 -0.2021 -9.9300 27 1 0.4030 0.9322 -10.2832 28 1 -0.5301 -1.1674 -11.0577 29 1 -1.8567 0.3080 -9.6628 30 1 -0.3633 0.5128 0.8906 31 1 -0.3635 0.5148 -0.8894 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6057 -1.7214 1.2981 34 1 1.7633 -0.1577 2.1389 35 1 6.2100 -1.8025 4.3489 36 1 6.5852 -0.3614 5.3245 37 1 4.9427 -0.5975 4.6809 38 1 8.1620 0.3579 2.0301 39 1 8.4652 0.1957 3.7768 40 1 8.0895 -1.2448 2.8013 41 1 5.0436 1.6522 3.5990 42 1 6.6860 1.8879 4.2426 43 1 6.3828 2.0500 2.4960 44 1 5.1901 -1.3142 0.0108 45 1 3.8424 -2.4764 -0.0908 46 1 3.9344 -1.1887 -2.1665 47 1 3.9160 0.3399 -1.2536 48 1 1.2782 0.8837 -2.4078 49 1 -0.1349 0.3240 -4.6334 50 1 1.5232 0.7834 -5.0897 51 1 1.8315 -1.4176 -6.1884 52 1 0.1735 -1.8776 -5.7326 53 1 0.4129 -2.8198 -9.2844 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496819357.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:29:08 Heat of formation + Delta-G solvation = -161.360353 kcal Electronic energy + Delta-G solvation = -30653.191534 eV Core-core repulsion = 26523.232165 eV Total energy + Delta-G solvation = -4129.959369 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.04558 -41.01977 -39.55552 -37.80388 -36.03968 -35.52404 -34.89378 -33.78715 -33.09391 -31.95974 -28.34033 -28.29298 -28.06872 -27.80462 -26.11460 -23.88732 -23.27353 -22.83673 -21.50738 -20.90329 -20.26689 -18.99790 -18.75351 -17.77422 -17.44572 -17.23762 -17.17337 -16.45491 -16.39992 -16.31073 -15.66118 -15.46240 -15.31809 -14.83572 -14.74074 -14.53446 -14.47600 -14.16511 -14.12859 -13.70283 -13.42722 -13.21320 -13.19387 -13.10424 -13.01360 -12.84841 -12.81443 -12.77216 -12.60710 -12.50488 -12.41563 -12.29745 -12.09956 -11.98284 -11.88090 -11.63496 -11.50352 -11.37595 -11.30173 -11.06601 -10.68941 -10.54713 -10.01975 -9.84266 -8.16640 -6.30440 1.09509 1.42712 1.46928 1.54622 1.70851 1.77209 2.25834 2.45785 2.75733 3.16164 3.50495 3.70710 3.76979 3.81550 3.83232 3.96818 3.99912 4.09585 4.19145 4.23182 4.41815 4.50089 4.54267 4.58098 4.61441 4.63703 4.64790 4.69542 4.73771 4.75114 4.78688 4.85796 4.89645 4.92341 5.02564 5.03859 5.11367 5.12786 5.21987 5.28947 5.30033 5.35560 5.44460 5.47876 5.50320 5.58611 5.66406 5.87631 6.19660 6.24979 6.65909 6.88195 7.23432 7.38908 7.41353 8.95578 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.023666 B = 0.001932 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.859674 B =14487.438372 C =15012.267597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.098 4.098 3 H 0.089 0.911 4 C 0.135 3.865 5 N -0.594 5.594 6 C 0.651 3.349 7 O -0.590 6.590 8 O -0.368 6.368 9 C 0.123 3.877 10 C -0.178 4.178 11 C -0.137 4.137 12 C -0.178 4.178 13 C 0.121 3.879 14 C -0.139 4.139 15 C 0.149 3.851 16 H 0.069 0.931 17 N -0.712 5.712 18 C 0.515 3.485 19 O -0.585 6.585 20 C -0.121 4.121 21 C 0.043 3.957 22 C -0.544 4.544 23 H 0.075 0.925 24 C -0.007 4.007 25 N -0.937 5.937 26 Si 0.973 3.027 27 H -0.263 1.263 28 H -0.288 1.288 29 H -0.263 1.263 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.082 0.918 34 H 0.101 0.899 35 H 0.059 0.941 36 H 0.090 0.910 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.102 0.898 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.090 0.910 43 H 0.059 0.941 44 H 0.100 0.900 45 H 0.077 0.923 46 H 0.065 0.935 47 H 0.076 0.924 48 H 0.414 0.586 49 H 0.103 0.897 50 H 0.102 0.898 51 H -0.018 1.018 52 H -0.018 1.018 53 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.501 8.944 27.939 31.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 H 0.107 0.893 4 C 0.014 3.986 5 N -0.334 5.334 6 C 0.407 3.593 7 O -0.481 6.481 8 O -0.282 6.282 9 C 0.087 3.913 10 C -0.235 4.235 11 C -0.194 4.194 12 C -0.235 4.235 13 C -0.002 4.002 14 C -0.178 4.178 15 C 0.044 3.956 16 H 0.087 0.913 17 N -0.365 5.365 18 C 0.304 3.696 19 O -0.464 6.464 20 C -0.161 4.161 21 C 0.006 3.994 22 C -0.582 4.582 23 H 0.093 0.907 24 C -0.205 4.205 25 N -0.577 5.577 26 Si 0.796 3.204 27 H -0.188 1.188 28 H -0.214 1.214 29 H -0.187 1.187 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.119 0.881 35 H 0.078 0.922 36 H 0.109 0.891 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.120 0.880 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.109 0.891 43 H 0.078 0.922 44 H 0.119 0.881 45 H 0.095 0.905 46 H 0.083 0.917 47 H 0.094 0.906 48 H 0.251 0.749 49 H 0.121 0.879 50 H 0.120 0.880 51 H 0.000 1.000 52 H 0.001 0.999 53 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 10.660 8.132 28.150 31.180 hybrid contribution -0.389 0.130 -1.088 1.163 sum 10.271 8.262 27.061 30.101 Atomic orbital electron populations 1.21755 0.92502 1.02642 1.03223 1.21686 0.97483 1.00274 0.92324 0.89293 1.21757 0.76016 1.01996 0.98838 1.47095 1.06548 1.62588 1.17148 1.18093 0.81310 0.77281 0.82650 1.90874 1.74865 1.50140 1.32220 1.86319 1.16615 1.77709 1.47603 1.22421 0.91211 0.94078 0.83576 1.22460 1.03621 1.00330 0.97117 1.21885 0.89964 1.03523 1.03988 1.22454 1.03816 0.94058 1.03179 1.21597 0.99227 0.97251 0.82120 1.22172 0.95762 1.01965 0.97941 1.20967 0.93001 0.97363 0.84272 0.91279 1.45936 1.66568 1.14992 1.08993 1.21222 0.76364 0.86594 0.85442 1.90656 1.51427 1.18807 1.85505 1.21635 1.02931 0.99862 0.91623 1.18671 0.94762 0.93631 0.92381 1.21700 1.43159 0.97724 0.95574 0.90698 1.26128 0.95788 0.95500 1.03060 1.70167 1.49339 1.10135 1.28029 0.85393 0.79346 0.78093 0.77525 1.18763 1.21397 1.18736 0.90479 0.91666 0.92743 0.89932 0.88098 0.92152 0.89127 0.91811 0.91414 0.87964 0.91349 0.91773 0.89150 0.92204 0.88148 0.90500 0.91662 0.90559 0.74889 0.87883 0.88013 0.99960 0.99929 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.02 71.98 0.65 -1.44 16 2 C -0.10 -1.57 2.46 -10.72 -0.03 -1.60 16 3 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 4 C 0.14 2.29 5.72 86.36 0.49 2.79 16 5 N -0.59 -11.60 2.98 -950.09 -2.83 -14.43 16 6 C 0.65 14.56 7.74 129.79 1.00 15.56 16 7 O -0.59 -15.14 11.29 19.79 0.22 -14.92 16 8 O -0.37 -7.45 8.53 -55.54 -0.47 -7.93 16 9 C 0.12 1.93 1.13 -10.79 -0.01 1.92 16 10 C -0.18 -2.70 8.37 71.98 0.60 -2.10 16 11 C -0.14 -1.40 8.85 71.98 0.64 -0.76 16 12 C -0.18 -2.72 8.37 71.98 0.60 -2.12 16 13 C 0.12 2.28 6.42 86.22 0.55 2.83 16 14 C -0.14 -2.97 5.64 30.53 0.17 -2.80 16 15 C 0.15 3.29 1.88 45.02 0.08 3.38 16 16 H 0.07 1.88 7.58 -2.39 -0.02 1.86 16 17 N -0.71 -17.54 4.37 -442.39 -1.93 -19.47 16 18 C 0.52 18.83 7.79 87.66 0.68 19.51 16 19 O -0.58 -27.34 15.64 -3.03 -0.05 -27.38 16 20 C -0.12 -4.69 5.64 29.85 0.17 -4.53 16 21 C 0.04 2.38 4.26 29.85 0.13 2.50 16 22 C -0.54 -30.74 9.11 25.60 0.23 -30.51 16 23 H 0.07 3.84 7.74 -2.91 -0.02 3.82 16 24 C -0.01 -0.42 5.46 84.66 0.46 0.04 16 25 N -0.94 -59.26 13.29 21.45 0.28 -58.97 16 26 Si 0.97 44.12 29.54 68.60 2.03 46.14 16 27 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 28 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 29 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 30 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.06 0.98 7.37 -2.39 -0.02 0.96 16 32 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 33 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.10 1.77 7.00 -2.39 -0.02 1.75 16 35 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.06 1.30 5.88 -2.39 -0.01 1.29 16 38 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.06 1.31 5.88 -2.38 -0.01 1.30 16 42 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.10 1.79 6.93 -2.39 -0.02 1.77 16 45 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 46 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 47 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 48 H 0.41 7.47 8.31 -92.70 -0.77 6.70 16 49 H 0.10 3.51 8.14 -2.39 -0.02 3.49 16 50 H 0.10 3.49 8.14 -2.39 -0.02 3.47 16 51 H -0.02 -1.13 8.10 -2.39 -0.02 -1.14 16 52 H -0.02 -1.11 8.10 -2.38 -0.02 -1.13 16 53 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -78.00 416.28 3.80 -74.20 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: 0.11 Total: 20.07 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: 6.44 Total: 2.68 kcal Atomic # 7 Polarization: -88.39 SS G_CDS: -4.48 Total: -92.87 kcal Atomic # 8 Polarization: -49.93 SS G_CDS: -0.30 Total: -50.23 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.14 kcal Total: -78.00 3.80 -74.20 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496819357.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.162 kcal (2) G-P(sol) polarization free energy of solvation -77.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds