Wall clock time and date at job start Tue Mar 31 2020 23:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08998 * 115.54903 * 2 1 4 4 C 1.52996 * 117.49853 * 214.33172 * 2 1 3 5 5 C 1.53000 * 60.03248 * 252.49829 * 4 2 1 6 6 H 1.08997 * 117.50146 * 107.49779 * 5 4 2 7 7 C 1.52995 * 117.49940 * 252.52634 * 5 4 2 8 8 N 1.46500 * 109.47278 * 243.60780 * 7 5 4 9 9 C 1.34774 * 120.00223 * 180.02562 * 8 7 5 10 10 O 1.21281 * 120.00369 * 359.97438 * 9 8 7 11 11 C 1.50703 * 120.00009 * 179.97438 * 9 8 7 12 12 H 1.08999 * 109.47388 * 300.00035 * 11 9 8 13 13 C 1.53007 * 109.47198 * 59.99719 * 11 9 8 14 14 C 1.52995 * 109.46864 * 186.17755 * 13 11 9 15 15 C 1.50707 * 109.46718 * 182.38259 * 14 13 11 16 16 H 1.07995 * 120.00214 * 358.92649 * 15 14 13 17 17 C 1.37879 * 119.99481 * 178.92794 * 15 14 13 18 18 N 1.31514 * 119.99609 * 186.96696 * 17 15 14 19 19 Si 1.86796 * 120.00548 * 6.96906 * 17 15 14 20 20 H 1.48494 * 109.47279 * 95.06340 * 19 17 15 21 21 H 1.48495 * 109.46996 * 215.06524 * 19 17 15 22 22 H 1.48505 * 109.46907 * 335.06127 * 19 17 15 23 23 N 1.46498 * 109.47310 * 179.97438 * 11 9 8 24 24 C 1.34773 * 120.00088 * 147.48823 * 23 11 9 25 25 O 1.21510 * 120.00177 * 5.37819 * 24 23 11 26 26 O 1.34638 * 120.00120 * 185.37856 * 24 23 11 27 27 C 1.45205 * 116.99840 * 182.87031 * 26 24 23 28 28 C 1.52994 * 109.47392 * 59.46752 * 27 26 24 29 29 C 1.53001 * 109.46836 * 179.46471 * 27 26 24 30 30 C 1.53000 * 109.47034 * 299.46201 * 27 26 24 31 31 H 1.09000 * 109.46844 * 154.28103 * 1 2 3 32 32 H 1.09002 * 109.46826 * 274.27415 * 1 2 3 33 33 H 1.08994 * 109.47149 * 34.27662 * 1 2 3 34 34 H 1.08997 * 117.50220 * 359.97438 * 4 2 1 35 35 H 1.09002 * 117.49605 * 144.99793 * 4 2 1 36 36 H 1.09003 * 109.47453 * 3.60276 * 7 5 4 37 37 H 1.08998 * 109.47366 * 123.60784 * 7 5 4 38 38 H 0.96998 * 119.99854 * 359.97438 * 8 7 5 39 39 H 1.08996 * 109.46981 * 306.17492 * 13 11 9 40 40 H 1.08999 * 109.46840 * 66.17709 * 13 11 9 41 41 H 1.09001 * 109.47500 * 302.37526 * 14 13 11 42 42 H 1.08991 * 109.47487 * 62.38470 * 14 13 11 43 43 H 0.97000 * 120.00647 * 180.02562 * 18 17 15 44 44 H 0.97002 * 119.99954 * 327.49575 * 23 11 9 45 45 H 1.09002 * 109.47177 * 64.63134 * 28 27 26 46 46 H 1.08996 * 109.47153 * 184.63176 * 28 27 26 47 47 H 1.09005 * 109.47311 * 304.63341 * 28 27 26 48 48 H 1.09013 * 109.46908 * 60.00110 * 29 27 26 49 49 H 1.08995 * 109.47087 * 179.97438 * 29 27 26 50 50 H 1.08998 * 109.47552 * 300.00114 * 29 27 26 51 51 H 1.09004 * 109.46886 * 60.00349 * 30 27 26 52 52 H 1.08990 * 109.47100 * 179.97438 * 30 27 26 53 53 H 1.09002 * 109.47304 * 300.00850 * 30 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2365 -1.1207 -0.7654 5 6 2.2372 -1.1218 0.7646 6 1 1.6124 -1.8598 1.2677 7 6 3.5499 -0.7768 1.4707 8 7 4.0101 -1.9357 2.2397 9 6 5.1540 -1.8630 2.9486 10 8 5.8028 -0.8383 2.9496 11 6 5.6270 -3.0550 3.7401 12 1 4.8739 -3.3206 4.4820 13 6 5.8518 -4.2377 2.7958 14 6 6.1825 -5.4877 3.6138 15 6 6.4613 -6.6387 2.6817 16 1 6.3910 -6.4975 1.6133 17 6 6.8060 -7.8718 3.1930 18 7 7.1822 -8.8375 2.3834 19 14 6.7388 -8.1709 5.0357 20 1 5.4341 -8.7851 5.3902 21 1 7.8400 -9.0863 5.4290 22 1 6.8890 -6.8791 5.7526 23 7 6.8840 -2.7248 4.4162 24 6 7.1696 -3.2735 5.6135 25 8 6.4328 -4.1156 6.0872 26 8 8.2714 -2.8887 6.2849 27 6 8.5507 -3.5676 7.5377 28 6 8.7166 -5.0664 7.2796 29 6 9.8395 -3.0089 8.1442 30 6 7.3905 -3.3426 8.5093 31 1 -0.3633 -0.9259 -0.4460 32 1 -0.3633 0.0766 1.0248 33 1 -0.3633 0.8491 -0.5787 34 1 1.6113 -1.8582 -1.2686 35 1 3.1714 -0.8745 -1.2689 36 1 4.3028 -0.5111 0.7286 37 1 3.3900 0.0655 2.1437 38 1 3.4910 -2.7551 2.2393 39 1 4.9481 -4.4138 2.2125 40 1 6.6802 -4.0136 2.1237 41 1 7.0619 -5.2973 4.2290 42 1 5.3371 -5.7363 4.2552 43 1 7.4244 -9.7053 2.7430 44 1 7.5107 -2.1110 4.0021 45 1 9.5932 -5.2325 6.6535 46 1 8.8443 -5.5866 8.2289 47 1 7.8303 -5.4481 6.7726 48 1 9.7213 -1.9409 8.3280 49 1 10.0489 -3.5181 9.0848 50 1 10.6661 -3.1691 7.4520 51 1 6.4723 -3.7406 8.0772 52 1 7.5999 -3.8525 9.4495 53 1 7.2723 -2.2747 8.6931 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496961655.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:40 Heat of formation + Delta-G solvation = -133.273807 kcal Electronic energy + Delta-G solvation = -31069.480769 eV Core-core repulsion = 26940.739324 eV Total energy + Delta-G solvation = -4128.741445 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.00131 -40.98733 -39.07814 -38.40006 -36.48678 -35.61502 -35.25769 -34.77468 -32.97357 -30.58270 -29.35754 -28.35853 -28.26780 -27.23601 -25.64452 -23.44120 -22.30637 -22.14882 -21.66545 -21.25665 -20.82595 -19.48702 -18.94465 -18.17730 -17.57736 -17.29727 -17.11732 -16.57120 -16.29491 -16.03469 -15.81162 -15.52564 -15.30058 -15.14234 -14.81470 -14.76102 -14.51240 -14.27368 -14.03748 -13.90656 -13.60785 -13.36975 -13.30928 -13.05760 -13.01514 -12.90135 -12.79998 -12.76354 -12.46775 -12.33793 -12.28547 -12.22776 -12.12081 -11.77114 -11.70257 -11.45237 -11.27361 -11.12596 -11.01315 -10.97297 -10.72488 -10.69665 -10.15005 -10.08002 -8.29598 -6.30520 1.06625 1.32700 1.35919 1.41999 1.57122 1.78093 2.13596 2.37997 2.83302 3.07076 3.16577 3.55745 3.64732 3.78522 3.82081 3.90487 3.97125 4.01567 4.04554 4.05852 4.26892 4.46532 4.47377 4.56629 4.59997 4.62705 4.70548 4.73066 4.77740 4.80492 4.85458 4.90491 4.93526 4.97562 4.99692 5.07865 5.11588 5.18898 5.21551 5.23672 5.32862 5.39369 5.41186 5.47144 5.47544 5.57953 5.62165 5.69647 6.28674 6.37774 6.39940 6.77699 7.04344 7.34400 7.38632 8.86170 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009169 B = 0.003366 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3052.874606 B = 8316.294657 C =10691.746314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.139 4.139 3 H 0.109 0.891 4 C -0.174 4.174 5 C -0.170 4.170 6 H 0.120 0.880 7 C 0.154 3.846 8 N -0.708 5.708 9 C 0.522 3.478 10 O -0.566 6.566 11 C 0.152 3.848 12 H 0.122 0.878 13 C -0.102 4.102 14 C 0.010 3.990 15 C -0.526 4.526 16 H 0.038 0.962 17 C 0.012 3.988 18 N -0.948 5.948 19 Si 0.928 3.072 20 H -0.275 1.275 21 H -0.290 1.290 22 H -0.233 1.233 23 N -0.689 5.689 24 C 0.650 3.350 25 O -0.574 6.574 26 O -0.370 6.370 27 C 0.126 3.874 28 C -0.193 4.193 29 C -0.133 4.133 30 C -0.177 4.177 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.102 0.898 35 H 0.094 0.906 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.416 0.584 39 H 0.088 0.912 40 H 0.055 0.945 41 H 0.012 0.988 42 H 0.016 0.984 43 H 0.264 0.736 44 H 0.414 0.586 45 H 0.054 0.946 46 H 0.091 0.909 47 H 0.060 0.940 48 H 0.075 0.925 49 H 0.103 0.897 50 H 0.065 0.935 51 H 0.063 0.937 52 H 0.090 0.910 53 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.454 18.899 5.061 20.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.158 4.158 3 H 0.127 0.873 4 C -0.211 4.211 5 C -0.189 4.189 6 H 0.138 0.862 7 C 0.031 3.969 8 N -0.361 5.361 9 C 0.307 3.693 10 O -0.445 6.445 11 C 0.044 3.956 12 H 0.139 0.861 13 C -0.141 4.141 14 C -0.027 4.027 15 C -0.564 4.564 16 H 0.057 0.943 17 C -0.185 4.185 18 N -0.589 5.589 19 Si 0.753 3.247 20 H -0.200 1.200 21 H -0.216 1.216 22 H -0.156 1.156 23 N -0.349 5.349 24 C 0.403 3.597 25 O -0.464 6.464 26 O -0.285 6.285 27 C 0.090 3.910 28 C -0.250 4.250 29 C -0.190 4.190 30 C -0.234 4.234 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.121 0.879 35 H 0.112 0.888 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.253 0.747 39 H 0.107 0.893 40 H 0.074 0.926 41 H 0.030 0.970 42 H 0.034 0.966 43 H 0.072 0.928 44 H 0.251 0.749 45 H 0.074 0.926 46 H 0.110 0.890 47 H 0.079 0.921 48 H 0.094 0.906 49 H 0.122 0.878 50 H 0.084 0.916 51 H 0.082 0.918 52 H 0.109 0.891 53 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.284 19.074 5.371 21.112 hybrid contribution 0.257 -1.067 0.095 1.102 sum -7.027 18.007 5.466 20.088 Atomic orbital electron populations 1.21396 0.91738 1.02573 1.02341 1.22479 0.96035 0.94417 1.02865 0.87330 1.23322 1.02955 1.01705 0.93128 1.22527 0.97685 1.03946 0.94727 0.86206 1.20922 0.94174 0.87622 0.94191 1.45840 1.23928 1.17867 1.48455 1.20465 0.81155 0.88317 0.79355 1.90672 1.56646 1.32511 1.64697 1.20858 0.86601 0.92504 0.95588 0.86064 1.21803 1.02517 0.92725 0.97077 1.19350 0.96421 0.92306 0.94645 1.21522 1.45811 0.95194 0.93906 0.94338 1.25817 0.94258 0.96106 1.02281 1.70069 1.47284 1.04421 1.37162 0.86004 0.77634 0.79614 0.81483 1.20029 1.21588 1.15562 1.44217 1.22489 1.50187 1.18045 1.18042 0.80507 0.79768 0.81359 1.90935 1.52120 1.34027 1.69300 1.86288 1.42664 1.62255 1.37261 1.22404 0.97713 0.91426 0.79468 1.22652 1.02902 0.95748 1.03748 1.21873 0.93156 1.02512 1.01413 1.22465 0.98593 1.02818 0.99546 0.92244 0.91859 0.91249 0.87939 0.88794 0.91926 0.91275 0.74651 0.89345 0.92635 0.96992 0.96605 0.92753 0.74904 0.92640 0.89038 0.92146 0.90604 0.87802 0.91621 0.91849 0.89088 0.91406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.30 10.19 71.99 0.73 -0.56 16 2 C -0.14 -1.77 6.13 -10.77 -0.07 -1.83 16 3 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 4 C -0.17 -2.45 9.82 30.59 0.30 -2.15 16 5 C -0.17 -2.48 5.57 -10.77 -0.06 -2.54 16 6 H 0.12 1.59 8.04 -2.39 -0.02 1.57 16 7 C 0.15 2.90 5.96 86.38 0.51 3.42 16 8 N -0.71 -15.25 5.41 -463.06 -2.50 -17.76 16 9 C 0.52 14.70 7.22 87.66 0.63 15.33 16 10 O -0.57 -18.80 15.95 -3.03 -0.05 -18.84 16 11 C 0.15 4.77 2.62 44.25 0.12 4.88 16 12 H 0.12 3.75 7.43 -2.39 -0.02 3.73 16 13 C -0.10 -3.77 4.78 30.59 0.15 -3.62 16 14 C 0.01 0.49 2.81 29.85 0.08 0.57 16 15 C -0.53 -30.44 9.65 25.60 0.25 -30.20 16 16 H 0.04 2.40 7.99 -2.91 -0.02 2.37 16 17 C 0.01 0.74 5.47 84.66 0.46 1.20 16 18 N -0.95 -60.45 13.96 21.45 0.30 -60.15 16 19 Si 0.93 46.49 27.51 68.60 1.89 48.38 16 20 H -0.27 -13.39 7.11 99.48 0.71 -12.68 16 21 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 22 H -0.23 -11.33 4.99 99.48 0.50 -10.83 16 23 N -0.69 -23.01 4.70 -573.72 -2.69 -25.71 16 24 C 0.65 23.50 6.82 129.79 0.89 24.39 16 25 O -0.57 -23.09 9.63 19.81 0.19 -22.90 16 26 O -0.37 -12.05 9.94 -55.48 -0.55 -12.60 16 27 C 0.13 3.45 1.13 -10.80 -0.01 3.43 16 28 C -0.19 -6.03 8.43 71.98 0.61 -5.43 16 29 C -0.13 -2.53 8.85 71.98 0.64 -1.89 16 30 C -0.18 -4.42 8.38 71.98 0.60 -3.81 16 31 H 0.06 0.61 7.90 -2.39 -0.02 0.59 16 32 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.10 1.34 8.05 -2.39 -0.02 1.32 16 35 H 0.09 1.38 8.03 -2.39 -0.02 1.36 16 36 H 0.06 1.30 7.88 -2.39 -0.02 1.28 16 37 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.42 7.46 7.75 -92.71 -0.72 6.74 16 39 H 0.09 2.88 7.40 -2.39 -0.02 2.86 16 40 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 41 H 0.01 0.59 5.24 -2.39 -0.01 0.58 16 42 H 0.02 0.75 7.42 -2.39 -0.02 0.73 16 43 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 44 H 0.41 13.04 8.11 -92.71 -0.75 12.29 16 45 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 47 H 0.06 2.39 4.30 -2.38 -0.01 2.38 16 48 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 49 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 50 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 51 H 0.06 1.97 5.82 -2.39 -0.01 1.96 16 52 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 53 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -75.09 417.49 1.64 -73.45 By element: Atomic # 1 Polarization: 35.71 SS G_CDS: -0.77 Total: 34.94 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: 5.83 Total: 1.19 kcal Atomic # 7 Polarization: -98.71 SS G_CDS: -4.90 Total: -103.61 kcal Atomic # 8 Polarization: -53.93 SS G_CDS: -0.41 Total: -54.34 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 1.89 Total: 48.38 kcal Total: -75.09 1.64 -73.45 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496961655.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.827 kcal (2) G-P(sol) polarization free energy of solvation -75.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds