Wall clock time and date at job start Wed Apr 1 2020 01:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 113.27761 * 2 1 4 4 C 1.53495 * 114.20441 * 226.94010 * 2 1 3 5 5 N 1.47069 * 87.98272 * 220.34245 * 4 2 1 6 6 C 1.34775 * 136.05995 * 207.08756 * 5 4 2 7 7 O 1.21273 * 120.00283 * 180.02562 * 6 5 4 8 8 C 1.50700 * 119.99940 * 359.97438 * 6 5 4 9 9 H 1.09004 * 109.47009 * 60.00228 * 8 6 5 10 10 C 1.53001 * 109.47439 * 300.00590 * 8 6 5 11 11 C 1.52997 * 109.47417 * 174.99374 * 10 8 6 12 12 C 1.50701 * 109.47348 * 179.97438 * 11 10 8 13 13 H 1.08000 * 119.99959 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99780 * 180.02562 * 12 11 10 15 15 N 1.31510 * 120.00281 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99660 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46554 * 60.00467 * 16 14 12 18 18 H 1.48501 * 109.46950 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47426 * 300.00631 * 16 14 12 20 20 N 1.46494 * 109.47407 * 180.02562 * 8 6 5 21 21 C 1.34780 * 120.00166 * 275.00311 * 20 8 6 22 22 O 1.21513 * 119.99577 * 359.97438 * 21 20 8 23 23 O 1.34628 * 120.00286 * 179.97438 * 21 20 8 24 24 C 1.45202 * 117.00407 * 179.97438 * 23 21 20 25 25 C 1.53006 * 109.46867 * 59.99955 * 24 23 21 26 26 C 1.52999 * 109.47019 * 300.00782 * 24 23 21 27 27 C 1.52997 * 109.47464 * 180.02562 * 24 23 21 28 28 C 1.47065 * 87.88372 * 27.34138 * 5 4 2 29 29 H 1.08999 * 113.47042 * 87.43793 * 28 5 4 30 30 C 1.53001 * 113.46809 * 217.87877 * 28 5 4 31 31 H 1.08997 * 109.47025 * 173.56164 * 1 2 3 32 32 H 1.09000 * 109.46866 * 293.55852 * 1 2 3 33 33 H 1.08995 * 109.47252 * 53.55565 * 1 2 3 34 34 H 1.09002 * 113.47201 * 105.56388 * 4 2 1 35 35 H 1.08998 * 113.52135 * 335.12888 * 4 2 1 36 36 H 1.08995 * 109.47437 * 294.99905 * 10 8 6 37 37 H 1.09004 * 109.47172 * 54.99502 * 10 8 6 38 38 H 1.08995 * 109.47251 * 300.00645 * 11 10 8 39 39 H 1.09004 * 109.46844 * 59.99928 * 11 10 8 40 40 H 0.97003 * 119.99757 * 179.97438 * 15 14 12 41 41 H 0.97000 * 120.00376 * 95.00527 * 20 8 6 42 42 H 1.09001 * 109.46801 * 300.00397 * 25 24 23 43 43 H 1.09001 * 109.46998 * 59.99993 * 25 24 23 44 44 H 1.09000 * 109.47050 * 180.02562 * 25 24 23 45 45 H 1.09000 * 109.47160 * 179.97438 * 26 24 23 46 46 H 1.09002 * 109.46719 * 299.99410 * 26 24 23 47 47 H 1.08993 * 109.47839 * 59.99251 * 26 24 23 48 48 H 1.09001 * 109.47375 * 300.00043 * 27 24 23 49 49 H 1.09002 * 109.46777 * 60.00599 * 27 24 23 50 50 H 1.09000 * 109.47140 * 180.02562 * 27 24 23 51 51 H 1.08998 * 109.47199 * 40.49411 * 30 28 5 52 52 H 1.08996 * 109.47486 * 160.49416 * 30 28 5 53 53 H 1.08999 * 109.47220 * 280.49440 * 30 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9608 1.0013 0.0000 4 6 2.1594 -0.9559 -1.0229 5 7 3.1599 -1.3052 -0.0032 6 6 4.4331 -1.7472 -0.0042 7 8 5.0060 -1.9487 1.0455 8 6 5.1446 -1.9923 -1.3099 9 1 5.1876 -1.0642 -1.8800 10 6 4.3854 -3.0498 -2.1138 11 6 5.0355 -3.2085 -3.4897 12 6 4.2882 -4.2506 -4.2813 13 1 3.4346 -4.7495 -3.8466 14 6 4.6941 -4.5670 -5.5604 15 7 5.7338 -3.9599 -6.0895 16 14 3.7682 -5.8593 -6.5413 17 1 2.3547 -5.4353 -6.7080 18 1 4.3991 -6.0132 -7.8768 19 1 3.8141 -7.1560 -5.8191 20 7 6.5051 -2.4657 -1.0434 21 6 7.4952 -1.5792 -0.8188 22 8 7.2593 -0.3873 -0.8379 23 8 8.7454 -2.0142 -0.5734 24 6 9.7615 -1.0033 -0.3410 25 6 9.3733 -0.1603 0.8754 26 6 9.8741 -0.1012 -1.5716 27 6 11.1076 -1.6831 -0.0825 28 6 2.1576 -0.9661 1.0181 29 1 1.5077 -1.8004 1.2824 30 6 2.7486 -0.2646 2.2427 31 1 -0.3633 -1.0212 -0.1152 32 1 -0.3633 0.4107 0.9420 33 1 -0.3633 0.6104 -0.8266 34 1 2.5820 -0.4474 -1.8895 35 1 1.5107 -1.7877 -1.2974 36 1 4.4187 -4.0019 -1.5843 37 1 3.3481 -2.7381 -2.2359 38 1 5.0023 -2.2564 -4.0192 39 1 6.0729 -3.5202 -3.3676 40 1 6.0196 -4.1828 -6.9892 41 1 6.6934 -3.4171 -1.0286 42 1 8.4144 0.3240 0.6908 43 1 9.2929 -0.8029 1.7521 44 1 10.1358 0.5989 1.0496 45 1 10.6366 0.6580 -1.3970 46 1 10.1507 -0.7017 -2.4382 47 1 8.9153 0.3831 -1.7562 48 1 11.0276 -2.3260 0.7940 49 1 11.3839 -2.2832 -0.9495 50 1 11.8702 -0.9242 0.0923 51 1 3.5033 0.4531 1.9212 52 1 1.9568 0.2570 2.7801 53 1 3.2069 -1.0043 2.8992 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000497131710.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:00:47 Heat of formation + Delta-G solvation = -119.568938 kcal Electronic energy + Delta-G solvation = -31684.682970 eV Core-core repulsion = 27556.535813 eV Total energy + Delta-G solvation = -4128.147157 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.10656 -41.51474 -39.60453 -38.15668 -36.83845 -35.35272 -34.82324 -33.18397 -32.33932 -31.30105 -29.38948 -28.38234 -28.31004 -27.43444 -25.70082 -24.34271 -23.39436 -22.55783 -21.46553 -21.10743 -20.04860 -19.33241 -18.56456 -17.92621 -17.79812 -17.23115 -16.91210 -16.56800 -16.42193 -15.98066 -15.60187 -15.41113 -15.32256 -15.02309 -14.76485 -14.57647 -14.46747 -14.12937 -13.97573 -13.60970 -13.36075 -13.34564 -13.17663 -12.92696 -12.88157 -12.82885 -12.76787 -12.70123 -12.64297 -12.59419 -12.50921 -12.40857 -12.33870 -12.16597 -11.84856 -11.65653 -11.41526 -11.31336 -11.16390 -11.09399 -11.07126 -10.52775 -10.09241 -9.73136 -8.16732 -6.28043 1.05029 1.43966 1.46050 1.50749 1.53981 1.61547 1.97086 2.43553 3.10992 3.17738 3.24459 3.44903 3.74005 3.78525 3.81183 3.93213 3.96858 3.99669 4.03294 4.22343 4.40122 4.41762 4.48215 4.51253 4.56308 4.59183 4.71294 4.72923 4.73923 4.77251 4.80758 4.81254 4.85595 4.95697 5.02093 5.04811 5.09066 5.09653 5.16978 5.23900 5.27261 5.34224 5.34510 5.50369 5.52081 5.54851 5.65812 5.83820 6.21509 6.31740 6.65699 6.88098 7.04881 7.29032 7.41610 8.94458 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.005893 B = 0.004909 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4750.484359 B = 5702.860555 C = 9823.845338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.105 4.105 3 H 0.103 0.897 4 C 0.090 3.910 5 N -0.648 5.648 6 C 0.534 3.466 7 O -0.572 6.572 8 C 0.161 3.839 9 H 0.098 0.902 10 C -0.094 4.094 11 C 0.034 3.966 12 C -0.539 4.539 13 H 0.067 0.933 14 C 0.004 3.996 15 N -0.932 5.932 16 Si 0.961 3.039 17 H -0.263 1.263 18 H -0.289 1.289 19 H -0.269 1.269 20 N -0.682 5.682 21 C 0.656 3.344 22 O -0.592 6.592 23 O -0.371 6.371 24 C 0.120 3.880 25 C -0.174 4.174 26 C -0.179 4.179 27 C -0.134 4.134 28 C 0.125 3.875 29 H 0.108 0.892 30 C -0.146 4.146 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.107 0.893 36 H 0.066 0.934 37 H 0.093 0.907 38 H -0.008 1.008 39 H -0.003 1.003 40 H 0.262 0.738 41 H 0.413 0.587 42 H 0.055 0.945 43 H 0.057 0.943 44 H 0.098 0.902 45 H 0.099 0.901 46 H 0.056 0.944 47 H 0.057 0.943 48 H 0.069 0.931 49 H 0.066 0.934 50 H 0.109 0.891 51 H 0.036 0.964 52 H 0.097 0.903 53 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.581 8.555 13.919 16.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.124 4.124 3 H 0.121 0.879 4 C -0.032 4.032 5 N -0.383 5.383 6 C 0.323 3.677 7 O -0.451 6.451 8 C 0.053 3.947 9 H 0.116 0.884 10 C -0.132 4.132 11 C -0.003 4.003 12 C -0.577 4.577 13 H 0.085 0.915 14 C -0.194 4.194 15 N -0.572 5.572 16 Si 0.786 3.214 17 H -0.188 1.188 18 H -0.215 1.215 19 H -0.194 1.194 20 N -0.340 5.340 21 C 0.410 3.590 22 O -0.484 6.484 23 O -0.286 6.286 24 C 0.084 3.916 25 C -0.232 4.232 26 C -0.237 4.237 27 C -0.190 4.190 28 C 0.024 3.976 29 H 0.126 0.874 30 C -0.203 4.203 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.125 0.875 36 H 0.085 0.915 37 H 0.112 0.888 38 H 0.011 0.989 39 H 0.016 0.984 40 H 0.071 0.929 41 H 0.250 0.750 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.117 0.883 45 H 0.117 0.883 46 H 0.075 0.925 47 H 0.076 0.924 48 H 0.088 0.912 49 H 0.085 0.915 50 H 0.128 0.872 51 H 0.055 0.945 52 H 0.116 0.884 53 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.961 8.978 14.325 17.164 hybrid contribution 0.180 -1.051 -0.846 1.362 sum -2.781 7.927 13.479 15.882 Atomic orbital electron populations 1.21637 0.90912 1.03230 1.03393 1.23037 0.97841 0.97758 0.93741 0.87914 1.23477 0.88045 0.98324 0.93390 1.49852 1.09767 1.65101 1.13579 1.20719 0.80826 0.75175 0.91018 1.90624 1.66547 1.53433 1.34526 1.20817 0.80274 1.00839 0.92729 0.88414 1.21767 0.99521 0.96160 0.95757 1.18912 0.95179 0.95442 0.90770 1.21576 1.14382 1.22072 0.99621 0.91527 1.25907 0.95866 0.98549 0.99103 1.70103 1.27039 1.43893 1.16143 0.85563 0.79048 0.79426 0.77381 1.18801 1.21461 1.19377 1.44302 1.06039 1.09756 1.73880 1.18075 0.81158 0.84306 0.75468 1.90826 1.83850 1.15575 1.58113 1.86307 1.16727 1.42041 1.83541 1.22508 0.86075 0.86936 0.96043 1.22426 1.03609 1.00675 0.96455 1.22473 1.03938 1.00418 0.96831 1.21884 0.91943 1.02094 1.03119 1.23121 0.87040 0.97054 0.90430 0.87418 1.21836 1.01198 0.99977 0.97321 0.91482 0.90738 0.90949 0.90242 0.87489 0.91541 0.88828 0.98940 0.98428 0.92942 0.75049 0.92643 0.92412 0.88331 0.88268 0.92499 0.92393 0.91212 0.91463 0.87229 0.94455 0.88397 0.93997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.38 9.73 71.98 0.70 -0.68 16 2 C -0.10 -1.69 4.26 -10.37 -0.04 -1.74 16 3 H 0.10 1.72 8.13 -2.39 -0.02 1.70 16 4 C 0.09 1.89 6.27 83.18 0.52 2.41 16 5 N -0.65 -18.41 3.51 -833.11 -2.92 -21.33 16 6 C 0.53 19.62 7.34 87.66 0.64 20.26 16 7 O -0.57 -24.50 16.52 -3.01 -0.05 -24.55 16 8 C 0.16 6.13 2.26 44.25 0.10 6.23 16 9 H 0.10 3.96 7.58 -2.38 -0.02 3.94 16 10 C -0.09 -3.61 4.62 30.59 0.14 -3.47 16 11 C 0.03 1.69 4.86 29.85 0.15 1.84 16 12 C -0.54 -28.70 9.11 25.60 0.23 -28.46 16 13 H 0.07 3.33 7.74 -2.91 -0.02 3.30 16 14 C 0.00 0.21 5.46 84.66 0.46 0.68 16 15 N -0.93 -55.37 13.29 21.45 0.28 -55.09 16 16 Si 0.96 42.53 29.54 68.60 2.03 44.55 16 17 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 18 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 19 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 20 N -0.68 -26.93 4.06 -573.73 -2.33 -29.26 16 21 C 0.66 26.72 7.89 129.79 1.02 27.74 16 22 O -0.59 -25.73 11.54 19.80 0.23 -25.50 16 23 O -0.37 -13.51 9.94 -55.38 -0.55 -14.06 16 24 C 0.12 3.44 1.13 -10.79 -0.01 3.43 16 25 C -0.17 -4.79 8.37 71.98 0.60 -4.19 16 26 C -0.18 -5.08 8.37 71.98 0.60 -4.48 16 27 C -0.13 -2.72 8.85 71.98 0.64 -2.08 16 28 C 0.13 2.66 4.26 41.88 0.18 2.84 16 29 H 0.11 1.95 8.10 -2.39 -0.02 1.94 16 30 C -0.15 -3.27 9.26 71.98 0.67 -2.60 16 31 H 0.07 0.64 8.04 -2.39 -0.02 0.62 16 32 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.11 1.94 7.93 -2.39 -0.02 1.92 16 36 H 0.07 2.50 8.14 -2.39 -0.02 2.49 16 37 H 0.09 3.21 6.18 -2.38 -0.01 3.20 16 38 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 39 H 0.00 -0.14 7.75 -2.38 -0.02 -0.16 16 40 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 41 H 0.41 15.47 8.71 -92.71 -0.81 14.66 16 42 H 0.05 1.91 5.88 -2.39 -0.01 1.90 16 43 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 45 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 46 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 47 H 0.06 2.02 5.88 -2.39 -0.01 2.00 16 48 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 49 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 50 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 51 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 52 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 53 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -74.93 424.12 3.36 -71.57 By element: Atomic # 1 Polarization: 35.86 SS G_CDS: 0.07 Total: 35.94 kcal Atomic # 6 Polarization: 11.13 SS G_CDS: 6.60 Total: 17.73 kcal Atomic # 7 Polarization: -100.71 SS G_CDS: -4.97 Total: -105.68 kcal Atomic # 8 Polarization: -63.73 SS G_CDS: -0.37 Total: -64.11 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.55 kcal Total: -74.93 3.36 -71.57 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497131710.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.004 kcal (2) G-P(sol) polarization free energy of solvation -74.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds