Wall clock time and date at job start Wed Apr 1 2020 01:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08992 * 113.28501 * 2 1 4 4 C 1.53760 * 114.57254 * 226.73617 * 2 1 3 5 5 N 1.47058 * 87.89004 * 272.66558 * 4 2 1 6 6 C 1.34775 * 136.05737 * 152.96409 * 5 4 2 7 7 O 1.21287 * 120.00351 * 179.63194 * 6 5 4 8 8 C 1.50702 * 119.99903 * 359.63228 * 6 5 4 9 9 H 1.08997 * 109.46782 * 319.99476 * 8 6 5 10 10 C 1.52996 * 109.47043 * 80.00233 * 8 6 5 11 11 C 1.53002 * 109.46737 * 185.00147 * 10 8 6 12 12 C 1.50706 * 109.47153 * 179.97438 * 11 10 8 13 13 H 1.07998 * 119.99501 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00436 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00481 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 119.99886 * 359.72901 * 14 12 11 17 17 H 1.48502 * 109.46964 * 270.27509 * 16 14 12 18 18 H 1.48505 * 109.47036 * 30.26897 * 16 14 12 19 19 H 1.48490 * 109.47395 * 150.27411 * 16 14 12 20 20 N 1.46507 * 109.47019 * 199.99658 * 8 6 5 21 21 C 1.34772 * 120.00274 * 300.00138 * 20 8 6 22 22 O 1.21517 * 120.00139 * 359.97438 * 21 20 8 23 23 O 1.34631 * 120.00099 * 179.97438 * 21 20 8 24 24 C 1.45205 * 117.00323 * 179.97438 * 23 21 20 25 25 C 1.53001 * 109.46680 * 60.00090 * 24 23 21 26 26 C 1.52993 * 109.47221 * 180.02562 * 24 23 21 27 27 C 1.53004 * 109.47146 * 300.00609 * 24 23 21 28 28 C 1.47073 * 87.88740 * 332.70869 * 5 4 2 29 29 H 1.09003 * 113.46615 * 272.56406 * 28 5 4 30 30 C 1.52991 * 113.46872 * 142.17977 * 28 5 4 31 31 H 1.08996 * 109.46848 * 286.93308 * 1 2 3 32 32 H 1.09002 * 109.46685 * 46.93415 * 1 2 3 33 33 H 1.09006 * 109.46976 * 166.92873 * 1 2 3 34 34 H 1.09000 * 113.46008 * 157.92816 * 4 2 1 35 35 H 1.09003 * 113.55338 * 27.41970 * 4 2 1 36 36 H 1.08991 * 109.47455 * 65.00062 * 10 8 6 37 37 H 1.09001 * 109.46830 * 304.99508 * 10 8 6 38 38 H 1.09004 * 109.47503 * 59.99893 * 11 10 8 39 39 H 1.09001 * 109.46939 * 299.99294 * 11 10 8 40 40 H 0.96999 * 120.00235 * 179.72806 * 15 14 12 41 41 H 0.97004 * 119.99698 * 119.99999 * 20 8 6 42 42 H 1.08996 * 109.47219 * 60.00240 * 25 24 23 43 43 H 1.09006 * 109.46955 * 180.02562 * 25 24 23 44 44 H 1.08996 * 109.47384 * 300.00315 * 25 24 23 45 45 H 1.09006 * 109.47196 * 60.00623 * 26 24 23 46 46 H 1.09001 * 109.47185 * 179.97438 * 26 24 23 47 47 H 1.08995 * 109.47640 * 299.99789 * 26 24 23 48 48 H 1.09004 * 109.46955 * 59.99260 * 27 24 23 49 49 H 1.08990 * 109.46957 * 179.97438 * 27 24 23 50 50 H 1.09003 * 109.46648 * 299.99836 * 27 24 23 51 51 H 1.09005 * 109.47487 * 79.50102 * 30 28 5 52 52 H 1.09000 * 109.47526 * 199.50355 * 30 28 5 53 53 H 1.09003 * 109.47325 * 319.50779 * 30 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9609 1.0011 0.0000 4 6 2.1695 -0.9584 -1.0183 5 7 2.0848 -2.0131 0.0030 6 6 1.9876 -3.3573 0.0040 7 8 1.9420 -3.9613 1.0548 8 6 1.9356 -4.1100 -1.3006 9 1 1.3139 -3.5642 -2.0103 10 6 3.3507 -4.2510 -1.8648 11 6 3.2858 -4.9039 -3.2470 12 6 4.6796 -5.0422 -3.8032 13 1 5.5269 -4.6984 -3.2284 14 6 4.8732 -5.6077 -5.0456 15 7 6.0895 -5.7279 -5.5312 16 14 3.4084 -6.2093 -6.0364 17 1 3.1336 -7.6296 -5.7010 18 1 2.2175 -5.3844 -5.7100 19 1 3.7094 -6.0923 -7.4858 20 7 1.3654 -5.4405 -1.0743 21 6 1.9696 -6.2976 -0.2278 22 8 2.9877 -5.9671 0.3475 23 8 1.4454 -7.5200 -0.0195 24 6 2.1496 -8.3907 0.9049 25 6 2.2101 -7.7290 2.2831 26 6 1.4104 -9.7259 1.0116 27 6 3.5709 -8.6345 0.3935 28 6 2.1594 -0.9560 1.0228 29 1 3.1799 -0.6882 1.2966 30 6 1.2704 -1.2196 2.2397 31 1 -0.3633 0.2993 0.9831 32 1 -0.3633 0.7018 -0.7508 33 1 -0.3633 -1.0011 -0.2324 34 1 3.1926 -0.6911 -1.2826 35 1 1.5440 -1.1476 -1.8907 36 1 3.9478 -4.8720 -1.1973 37 1 3.8077 -3.2651 -1.9498 38 1 2.6886 -4.2828 -3.9146 39 1 2.8287 -5.8898 -3.1620 40 1 6.2260 -6.1293 -6.4036 41 1 0.5529 -5.7045 -1.5338 42 1 1.1976 -7.5552 2.6474 43 1 2.7391 -8.3823 2.9769 44 1 2.7369 -6.7778 2.2067 45 1 1.3678 -10.1971 0.0296 46 1 1.9393 -10.3796 1.7051 47 1 0.3978 -9.5526 1.3757 48 1 4.0977 -7.6833 0.3171 49 1 4.0996 -9.2876 1.0876 50 1 3.5278 -9.1058 -0.5884 51 1 1.7630 -1.9313 2.9023 52 1 1.0986 -0.2850 2.7736 53 1 0.3161 -1.6306 1.9104 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000497131712.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:01:01 Heat of formation + Delta-G solvation = -109.140156 kcal Electronic energy + Delta-G solvation = -32454.820576 eV Core-core repulsion = 28327.125645 eV Total energy + Delta-G solvation = -4127.694931 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.09242 -41.40830 -39.61066 -37.90039 -36.51919 -35.31669 -34.77377 -33.14381 -32.43831 -30.91438 -29.68444 -28.36220 -28.28148 -27.76204 -25.66595 -24.26916 -23.59635 -22.24873 -21.50970 -20.83396 -19.56711 -19.14059 -18.90360 -17.89795 -17.65988 -17.17094 -16.74800 -16.73601 -16.26431 -15.94845 -15.61017 -15.38695 -15.13643 -15.07532 -14.70160 -14.67691 -14.42273 -14.27998 -14.04143 -13.71021 -13.29936 -13.16128 -13.05148 -12.98692 -12.92783 -12.86286 -12.78270 -12.73945 -12.59031 -12.49271 -12.45167 -12.27705 -12.04580 -11.92621 -11.81589 -11.71671 -11.41934 -11.28522 -11.17175 -11.05756 -10.79249 -10.65918 -9.90675 -9.62101 -8.28790 -6.33626 1.18273 1.35993 1.38127 1.49496 1.60953 1.83534 2.17645 2.36292 3.06711 3.20385 3.30865 3.50525 3.78379 3.81344 3.85944 3.95822 3.96777 4.07676 4.13188 4.26408 4.45419 4.48460 4.49909 4.56015 4.58842 4.59694 4.71850 4.75139 4.76015 4.78552 4.82258 4.88472 4.89843 4.96353 5.00534 5.02949 5.08272 5.10059 5.22381 5.29461 5.30062 5.31333 5.38645 5.43630 5.53150 5.57157 5.62841 5.65517 6.27821 6.51264 6.73343 6.79672 7.22558 7.30282 7.57135 8.88523 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.007018 B = 0.005228 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3988.979311 B = 5354.175040 C = 8487.936427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.101 4.101 3 H 0.127 0.873 4 C 0.091 3.909 5 N -0.650 5.650 6 C 0.526 3.474 7 O -0.551 6.551 8 C 0.164 3.836 9 H 0.146 0.854 10 C -0.101 4.101 11 C 0.005 3.995 12 C -0.531 4.531 13 H 0.021 0.979 14 C 0.004 3.996 15 N -0.954 5.954 16 Si 0.951 3.049 17 H -0.275 1.275 18 H -0.231 1.231 19 H -0.283 1.283 20 N -0.693 5.693 21 C 0.650 3.350 22 O -0.564 6.564 23 O -0.375 6.375 24 C 0.128 3.872 25 C -0.171 4.171 26 C -0.131 4.131 27 C -0.180 4.180 28 C 0.119 3.881 29 H 0.090 0.910 30 C -0.142 4.142 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.039 0.961 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.046 0.954 37 H 0.067 0.933 38 H 0.038 0.962 39 H 0.011 0.989 40 H 0.266 0.734 41 H 0.420 0.580 42 H 0.059 0.941 43 H 0.089 0.911 44 H 0.053 0.947 45 H 0.067 0.933 46 H 0.103 0.897 47 H 0.073 0.927 48 H 0.051 0.949 49 H 0.092 0.908 50 H 0.054 0.946 51 H 0.030 0.970 52 H 0.093 0.907 53 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.249 7.369 12.259 22.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.120 4.120 3 H 0.145 0.855 4 C -0.031 4.031 5 N -0.387 5.387 6 C 0.315 3.685 7 O -0.428 6.428 8 C 0.056 3.944 9 H 0.163 0.837 10 C -0.139 4.139 11 C -0.032 4.032 12 C -0.569 4.569 13 H 0.039 0.961 14 C -0.192 4.192 15 N -0.594 5.594 16 Si 0.774 3.226 17 H -0.201 1.201 18 H -0.154 1.154 19 H -0.209 1.209 20 N -0.353 5.353 21 C 0.403 3.597 22 O -0.451 6.451 23 O -0.290 6.290 24 C 0.092 3.908 25 C -0.228 4.228 26 C -0.188 4.188 27 C -0.237 4.237 28 C 0.017 3.983 29 H 0.108 0.892 30 C -0.200 4.200 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.059 0.941 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.065 0.935 37 H 0.086 0.914 38 H 0.056 0.944 39 H 0.030 0.970 40 H 0.075 0.925 41 H 0.257 0.743 42 H 0.078 0.922 43 H 0.108 0.892 44 H 0.072 0.928 45 H 0.086 0.914 46 H 0.122 0.878 47 H 0.093 0.907 48 H 0.070 0.930 49 H 0.111 0.889 50 H 0.073 0.927 51 H 0.050 0.950 52 H 0.112 0.888 53 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -16.685 6.822 13.025 22.239 hybrid contribution 0.392 -0.722 -0.682 1.068 sum -16.294 6.101 12.343 21.332 Atomic orbital electron populations 1.21530 0.92308 1.01672 1.03046 1.22904 0.97110 0.98548 0.93402 0.85531 1.23444 1.02260 0.83756 0.93672 1.49970 1.72412 1.03140 1.13137 1.20660 0.75902 0.80666 0.91310 1.90697 1.50475 1.67201 1.34451 1.20915 0.97746 0.81558 0.94142 0.83666 1.21612 0.93710 1.01308 0.97310 1.19388 0.95042 0.95934 0.92835 1.21400 0.93204 1.40005 1.02271 0.96056 1.26041 0.98991 0.95371 0.98811 1.70086 1.23448 1.46479 1.19411 0.85653 0.80351 0.79399 0.77221 1.20053 1.15389 1.20864 1.44177 1.30803 1.13346 1.47013 1.18132 0.82005 0.80277 0.79256 1.90883 1.25695 1.77379 1.51194 1.86234 1.55172 1.24344 1.63258 1.22333 0.91879 0.89387 0.87243 1.22371 1.02578 1.02276 0.95592 1.21856 1.01104 0.92019 1.03828 1.22460 0.96425 1.02984 1.01857 1.22968 0.99796 0.84519 0.91055 0.89170 1.21807 0.99087 1.02067 0.97039 0.91288 0.90215 0.94139 0.88935 0.88690 0.93528 0.91400 0.94369 0.97035 0.92538 0.74324 0.92177 0.89240 0.92751 0.91393 0.87848 0.90750 0.92999 0.88947 0.92736 0.95049 0.88846 0.93062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.51 8.52 71.98 0.61 -0.90 16 2 C -0.10 -1.30 4.68 -10.37 -0.05 -1.35 16 3 H 0.13 0.96 8.14 -2.39 -0.02 0.95 16 4 C 0.09 1.60 7.97 83.27 0.66 2.26 16 5 N -0.65 -16.94 3.37 -832.99 -2.81 -19.75 16 6 C 0.53 18.07 6.97 87.66 0.61 18.68 16 7 O -0.55 -23.26 13.89 19.40 0.27 -22.99 16 8 C 0.16 5.37 2.84 44.24 0.13 5.49 16 9 H 0.15 3.55 8.14 -2.39 -0.02 3.53 16 10 C -0.10 -4.19 4.48 30.59 0.14 -4.06 16 11 C 0.01 0.25 3.93 29.85 0.12 0.37 16 12 C -0.53 -31.33 9.66 25.60 0.25 -31.08 16 13 H 0.02 1.41 7.99 -2.91 -0.02 1.39 16 14 C 0.00 0.25 5.47 84.65 0.46 0.71 16 15 N -0.95 -60.86 13.96 21.45 0.30 -60.56 16 16 Si 0.95 43.78 27.46 68.60 1.88 45.66 16 17 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 18 H -0.23 -9.29 6.55 99.48 0.65 -8.64 16 19 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 20 N -0.69 -23.16 4.66 -573.73 -2.67 -25.83 16 21 C 0.65 25.60 6.81 129.79 0.88 26.48 16 22 O -0.56 -25.77 7.74 27.26 0.21 -25.56 16 23 O -0.37 -13.12 9.94 -55.41 -0.55 -13.67 16 24 C 0.13 3.83 1.13 -10.79 -0.01 3.82 16 25 C -0.17 -5.09 8.37 71.98 0.60 -4.49 16 26 C -0.13 -2.72 8.85 71.98 0.64 -2.09 16 27 C -0.18 -5.89 8.37 71.98 0.60 -5.28 16 28 C 0.12 2.44 4.59 41.79 0.19 2.63 16 29 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 30 C -0.14 -3.00 8.15 71.98 0.59 -2.41 16 31 H 0.07 0.74 7.38 -2.39 -0.02 0.72 16 32 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.04 0.63 7.91 -2.38 -0.02 0.61 16 34 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.09 1.42 8.13 -2.39 -0.02 1.40 16 36 H 0.05 2.34 6.04 -2.39 -0.01 2.33 16 37 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 38 H 0.04 1.60 7.21 -2.39 -0.02 1.58 16 39 H 0.01 0.53 7.17 -2.39 -0.02 0.52 16 40 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 41 H 0.42 11.01 8.94 -92.71 -0.83 10.18 16 42 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 44 H 0.05 2.10 5.88 -2.39 -0.01 2.08 16 45 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 46 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 47 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 48 H 0.05 2.13 5.88 -2.38 -0.01 2.12 16 49 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 50 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 51 H 0.03 0.84 8.14 -2.38 -0.02 0.82 16 52 H 0.09 1.35 8.14 -2.39 -0.02 1.34 16 53 H 0.05 1.18 7.25 -2.39 -0.02 1.16 16 Total: -1.00 -84.70 412.79 3.06 -81.64 By element: Atomic # 1 Polarization: 32.27 SS G_CDS: 0.00 Total: 32.27 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: 6.42 Total: 8.79 kcal Atomic # 7 Polarization: -100.96 SS G_CDS: -5.18 Total: -106.14 kcal Atomic # 8 Polarization: -62.16 SS G_CDS: -0.07 Total: -62.23 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 1.88 Total: 45.66 kcal Total: -84.70 3.06 -81.64 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497131712.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.496 kcal (2) G-P(sol) polarization free energy of solvation -84.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds