Wall clock time and date at job start Tue Mar 31 2020 22:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47105 * 2 1 4 4 O 1.45204 * 109.47364 * 119.99857 * 2 1 3 5 5 C 1.34224 * 117.00068 * 149.99807 * 4 2 1 6 6 O 1.20833 * 120.00264 * 0.02562 * 5 4 2 7 7 C 1.50696 * 119.99910 * 179.97438 * 5 4 2 8 8 C 1.53004 * 109.47342 * 180.02562 * 7 5 4 9 9 C 1.52997 * 109.47383 * 180.02562 * 8 7 5 10 10 N 1.46498 * 109.46938 * 180.02562 * 9 8 7 11 11 C 1.34782 * 119.99675 * 180.02562 * 10 9 8 12 12 O 1.21582 * 120.00071 * 4.97931 * 11 10 9 13 13 N 1.34774 * 119.99915 * 184.98301 * 11 10 9 14 14 C 1.46926 * 120.63121 * 174.77166 * 13 11 10 15 15 C 1.53195 * 108.89465 * 126.33965 * 14 13 11 16 16 C 1.53354 * 109.14570 * 54.57617 * 15 14 13 17 17 C 1.53002 * 109.41659 * 178.67459 * 16 15 14 18 18 C 1.50705 * 109.47219 * 295.13248 * 17 16 15 19 19 H 1.08004 * 119.99805 * 359.97438 * 18 17 16 20 20 C 1.37873 * 120.00149 * 179.97438 * 18 17 16 21 21 N 1.31511 * 119.99894 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 119.99932 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47110 * 90.00084 * 22 20 18 24 24 H 1.48504 * 109.47198 * 210.00044 * 22 20 18 25 25 H 1.48500 * 109.47417 * 330.00188 * 22 20 18 26 26 C 1.53040 * 109.60905 * 298.70899 * 16 15 14 27 27 C 1.46926 * 120.63157 * 354.78914 * 13 11 10 28 28 H 1.08996 * 109.46853 * 299.99983 * 1 2 3 29 29 H 1.09000 * 109.46778 * 60.00354 * 1 2 3 30 30 H 1.09005 * 109.46912 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47335 * 240.00227 * 2 1 3 32 32 H 1.08999 * 109.47108 * 59.99500 * 3 2 1 33 33 H 1.08994 * 109.47254 * 180.02562 * 3 2 1 34 34 H 1.09009 * 109.46751 * 300.00043 * 3 2 1 35 35 H 1.09007 * 109.46750 * 60.00700 * 7 5 4 36 36 H 1.08998 * 109.47485 * 300.00943 * 7 5 4 37 37 H 1.08999 * 109.46688 * 60.00260 * 8 7 5 38 38 H 1.09004 * 109.47092 * 300.00556 * 8 7 5 39 39 H 1.09007 * 109.46974 * 60.00355 * 9 8 7 40 40 H 1.08998 * 109.47220 * 300.00624 * 9 8 7 41 41 H 0.96993 * 120.00686 * 359.97438 * 10 9 8 42 42 H 1.08999 * 109.58363 * 246.19988 * 14 13 11 43 43 H 1.09002 * 109.58625 * 6.48116 * 14 13 11 44 44 H 1.08997 * 109.49623 * 174.65400 * 15 14 13 45 45 H 1.09002 * 109.49577 * 294.75334 * 15 14 13 46 46 H 1.08994 * 109.42367 * 58.75582 * 16 15 14 47 47 H 1.09008 * 109.47043 * 55.12644 * 17 16 15 48 48 H 1.08992 * 109.47289 * 175.12966 * 17 16 15 49 49 H 0.97001 * 120.00130 * 180.02562 * 21 20 18 50 50 H 1.08993 * 109.50186 * 301.42491 * 26 16 15 51 51 H 1.09004 * 109.52060 * 181.34332 * 26 16 15 52 52 H 1.09010 * 109.58451 * 353.37613 * 27 13 11 53 53 H 1.08999 * 109.58904 * 113.65827 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0141 -0.6845 1.1856 5 6 3.1937 -1.3170 1.0851 6 8 3.8020 -1.2990 0.0412 7 6 3.7600 -2.0486 2.2746 8 6 5.1028 -2.6763 1.8954 9 6 5.6775 -3.4197 3.1029 10 7 6.9636 -4.0201 2.7399 11 6 7.6576 -4.7291 3.6521 12 8 7.1763 -4.9472 4.7471 13 7 8.8853 -5.1963 3.3505 14 6 9.7006 -5.8712 4.3696 15 6 10.1372 -7.2372 3.8308 16 6 10.8433 -7.0441 2.4832 17 6 11.3114 -8.4016 1.9550 18 6 12.3582 -8.9668 2.8802 19 1 12.6599 -8.4129 3.7569 20 6 12.9309 -10.1909 2.6073 21 7 13.8448 -10.6838 3.4144 22 14 12.4087 -11.1493 1.0913 23 1 13.2711 -10.7688 -0.0562 24 1 12.5472 -12.6044 1.3535 25 1 10.9927 -10.8365 0.7714 26 6 9.8735 -6.4140 1.4809 27 6 9.4340 -5.0400 1.9965 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.6766 1.9563 0.8899 33 1 3.1299 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8901 35 1 3.0670 -2.8313 2.5834 36 1 3.9061 -1.3478 3.0965 37 1 5.7956 -1.8934 1.5869 38 1 4.9571 -3.3771 1.0733 39 1 4.9846 -4.2027 3.4110 40 1 5.8231 -2.7192 3.9252 41 1 7.3152 -3.9081 1.8429 42 1 10.5807 -5.2678 4.5919 43 1 9.1122 -6.0074 5.2770 44 1 10.8201 -7.7063 4.5391 45 1 9.2613 -7.8715 3.6945 46 1 11.7046 -6.3895 2.6158 47 1 10.4631 -9.0845 1.9060 48 1 11.7358 -8.2772 0.9589 49 1 14.2480 -11.5449 3.2222 50 1 9.0002 -7.0561 1.3666 51 1 10.3694 -6.2993 0.5170 52 1 8.6688 -4.6300 1.3373 53 1 10.2908 -4.3668 2.0249 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567762880.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:27 Heat of formation + Delta-G solvation = -162.110577 kcal Electronic energy + Delta-G solvation = -29189.477513 eV Core-core repulsion = 25059.485612 eV Total energy + Delta-G solvation = -4129.991901 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.64019 -41.40283 -38.96050 -38.10515 -36.66467 -35.69479 -34.38181 -34.08452 -33.46042 -31.87973 -30.36086 -28.28225 -28.19701 -26.17122 -24.43992 -23.76851 -23.14708 -22.37656 -21.53688 -21.28223 -20.38956 -19.22495 -18.86777 -18.59779 -17.63757 -17.50611 -17.00079 -16.76326 -16.35030 -15.88797 -15.64912 -15.37595 -15.23299 -15.05063 -14.92640 -14.60763 -14.48269 -14.41146 -14.16688 -14.07258 -13.50636 -13.37950 -13.29549 -13.16830 -13.13117 -13.07957 -12.80684 -12.70951 -12.49457 -12.38114 -12.15038 -12.00719 -11.94071 -11.90655 -11.70238 -11.62916 -11.43504 -11.39218 -11.24345 -11.09528 -10.87461 -10.70280 -10.20555 -9.43396 -8.24609 -6.26461 1.19046 1.35737 1.38382 1.49299 1.52374 1.82636 2.13289 2.38474 2.93937 3.11076 3.57786 3.80603 3.86540 3.93090 3.97506 3.98487 3.99422 4.05921 4.13022 4.18588 4.23728 4.42428 4.52813 4.53729 4.59367 4.65290 4.66517 4.73028 4.75638 4.81149 4.83297 4.87852 4.90377 4.96464 5.07583 5.09018 5.12799 5.18031 5.20354 5.21331 5.25397 5.33108 5.44084 5.50491 5.55914 5.62066 5.73637 5.76172 5.99998 6.35544 6.73962 6.81495 6.97103 7.37347 7.55073 8.91940 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.023338 B = 0.001583 C = 0.001525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.450624 B =17688.105839 C =18360.333769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.070 3.930 3 C -0.167 4.167 4 O -0.359 6.359 5 C 0.462 3.538 6 O -0.540 6.540 7 C -0.106 4.106 8 C -0.109 4.109 9 C 0.140 3.860 10 N -0.737 5.737 11 C 0.702 3.298 12 O -0.636 6.636 13 N -0.625 5.625 14 C 0.136 3.864 15 C -0.112 4.112 16 C -0.069 4.069 17 C -0.007 4.007 18 C -0.518 4.518 19 H 0.038 0.962 20 C 0.002 3.998 21 N -0.953 5.953 22 Si 0.946 3.054 23 H -0.266 1.266 24 H -0.289 1.289 25 H -0.250 1.250 26 C -0.126 4.126 27 C 0.115 3.885 28 H 0.073 0.927 29 H 0.095 0.905 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.045 0.955 34 H 0.091 0.909 35 H 0.129 0.871 36 H 0.131 0.869 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.408 0.592 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.058 0.942 45 H 0.045 0.955 46 H 0.061 0.939 47 H 0.010 0.990 48 H 0.020 0.980 49 H 0.263 0.737 50 H 0.057 0.943 51 H 0.091 0.909 52 H 0.103 0.897 53 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.072 25.623 -8.707 38.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.016 3.984 3 C -0.224 4.224 4 O -0.276 6.276 5 C 0.307 3.693 6 O -0.430 6.430 7 C -0.144 4.144 8 C -0.147 4.147 9 C 0.016 3.984 10 N -0.396 5.396 11 C 0.404 3.596 12 O -0.518 6.518 13 N -0.362 5.362 14 C 0.013 3.987 15 C -0.150 4.150 16 C -0.088 4.088 17 C -0.045 4.045 18 C -0.556 4.556 19 H 0.056 0.944 20 C -0.195 4.195 21 N -0.595 5.595 22 Si 0.770 3.230 23 H -0.191 1.191 24 H -0.216 1.216 25 H -0.174 1.174 26 C -0.164 4.164 27 C -0.007 4.007 28 H 0.092 0.908 29 H 0.114 0.886 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.064 0.936 34 H 0.110 0.890 35 H 0.147 0.853 36 H 0.149 0.851 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.247 0.753 42 H 0.092 0.908 43 H 0.093 0.907 44 H 0.076 0.924 45 H 0.064 0.936 46 H 0.079 0.921 47 H 0.029 0.971 48 H 0.039 0.961 49 H 0.072 0.928 50 H 0.076 0.924 51 H 0.109 0.891 52 H 0.121 0.879 53 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -27.175 25.396 -8.234 38.095 hybrid contribution 0.716 -1.039 -0.754 1.470 sum -26.459 24.357 -8.987 37.069 Atomic orbital electron populations 1.21910 0.90557 1.03504 1.04335 1.22965 0.96432 0.92940 0.86071 1.22205 1.01077 0.94812 1.04355 1.86573 1.36516 1.62583 1.41915 1.24220 0.78862 0.75856 0.90396 1.90666 1.60120 1.59882 1.32351 1.21336 0.97262 1.01454 0.94354 1.21465 0.95621 1.00336 0.97254 1.21182 0.83183 0.96764 0.97290 1.45155 1.23106 1.56540 1.14752 1.15996 0.80764 0.78855 0.84024 1.90864 1.70497 1.65546 1.24908 1.47366 1.15324 1.60516 1.12975 1.21398 0.94109 0.92503 0.90682 1.21817 0.99240 0.95964 0.98024 1.20971 0.96957 0.96492 0.94356 1.19588 0.94789 0.94402 0.95671 1.21504 1.20930 1.03620 1.09572 0.94408 1.25975 0.94802 0.98826 0.99849 1.70072 1.29496 1.19897 1.40027 0.85719 0.80174 0.77298 0.79781 1.19102 1.21551 1.17364 1.21979 0.99085 0.96117 0.99209 1.21830 0.99991 0.97336 0.81521 0.90826 0.88627 0.91826 0.91062 0.90769 0.93575 0.89020 0.85324 0.85132 0.90249 0.90578 0.91802 0.91342 0.75298 0.90799 0.90685 0.92365 0.93606 0.92091 0.97133 0.96134 0.92801 0.92426 0.89085 0.87950 0.89704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.57 71.98 0.69 -0.26 16 2 C 0.07 0.80 3.18 30.59 0.10 0.90 16 3 C -0.17 -1.56 9.55 71.98 0.69 -0.87 16 4 O -0.36 -4.95 9.88 -51.36 -0.51 -5.45 16 5 C 0.46 6.72 7.93 71.23 0.56 7.28 16 6 O -0.54 -11.16 15.20 21.94 0.33 -10.82 16 7 C -0.11 -0.88 5.81 29.85 0.17 -0.71 16 8 C -0.11 -1.16 4.62 30.59 0.14 -1.02 16 9 C 0.14 2.10 5.68 86.38 0.49 2.59 16 10 N -0.74 -14.11 5.47 -478.54 -2.62 -16.72 16 11 C 0.70 19.91 8.29 179.05 1.49 21.40 16 12 O -0.64 -23.33 15.77 -3.97 -0.06 -23.39 16 13 N -0.63 -16.99 2.97 -836.89 -2.49 -19.48 16 14 C 0.14 4.30 6.43 86.36 0.56 4.85 16 15 C -0.11 -4.14 5.21 30.78 0.16 -3.98 16 16 C -0.07 -2.49 2.10 -10.66 -0.02 -2.52 16 17 C -0.01 -0.32 3.52 29.85 0.10 -0.22 16 18 C -0.52 -29.23 8.94 25.60 0.23 -29.00 16 19 H 0.04 2.34 7.30 -2.91 -0.02 2.32 16 20 C 0.00 0.09 5.47 84.65 0.46 0.55 16 21 N -0.95 -60.03 13.96 21.45 0.30 -59.73 16 22 Si 0.95 44.44 27.47 68.60 1.88 46.33 16 23 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 24 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 25 H -0.25 -10.97 6.54 99.48 0.65 -10.32 16 26 C -0.13 -3.31 5.36 30.67 0.16 -3.14 16 27 C 0.12 2.39 6.39 86.36 0.55 2.94 16 28 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.06 0.45 8.14 -2.38 -0.02 0.43 16 31 H 0.07 1.00 7.16 -2.39 -0.02 0.99 16 32 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.09 0.53 8.14 -2.38 -0.02 0.51 16 35 H 0.13 0.66 8.14 -2.38 -0.02 0.64 16 36 H 0.13 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.08 0.89 8.10 -2.39 -0.02 0.87 16 38 H 0.08 0.91 8.10 -2.38 -0.02 0.89 16 39 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 40 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.41 5.74 5.96 -92.71 -0.55 5.18 16 42 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 43 H 0.07 2.56 6.99 -2.39 -0.02 2.54 16 44 H 0.06 2.48 6.93 -2.39 -0.02 2.46 16 45 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 47 H 0.01 0.48 7.20 -2.38 -0.02 0.46 16 48 H 0.02 0.89 7.57 -2.39 -0.02 0.87 16 49 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 50 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 51 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 52 H 0.10 1.43 5.65 -2.38 -0.01 1.41 16 53 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -78.37 419.07 3.65 -74.71 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: 0.27 Total: 15.76 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: 6.54 Total: -1.20 kcal Atomic # 7 Polarization: -91.13 SS G_CDS: -4.80 Total: -95.93 kcal Atomic # 8 Polarization: -39.43 SS G_CDS: -0.24 Total: -39.67 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.88 Total: 46.33 kcal Total: -78.37 3.65 -74.71 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567762880.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.396 kcal (2) G-P(sol) polarization free energy of solvation -78.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds