Wall clock time and date at job start Wed Apr 1 2020 00:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34231 * 116.99706 * 2 1 4 4 O 1.20822 * 120.00343 * 359.97438 * 3 2 1 5 5 C 1.50708 * 119.99686 * 179.97438 * 3 2 1 6 6 C 1.53000 * 109.46922 * 180.02562 * 5 3 2 7 7 N 1.46894 * 109.47108 * 180.02562 * 6 5 3 8 8 C 1.46908 * 110.99825 * 293.95073 * 7 6 5 9 9 C 1.53238 * 109.33624 * 187.25612 * 8 7 6 10 10 N 1.47080 * 108.52124 * 306.16494 * 9 8 7 11 11 C 1.34775 * 120.88538 * 231.20854 * 10 9 8 12 12 O 1.21275 * 120.00314 * 185.51586 * 11 10 9 13 13 C 1.50697 * 119.99617 * 5.51520 * 11 10 9 14 14 C 1.53003 * 109.47275 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.47663 * 179.97438 * 14 13 11 16 16 C 1.53002 * 109.47331 * 179.97438 * 15 14 13 17 17 C 1.50697 * 109.46944 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00434 * 0.02562 * 17 16 15 19 19 C 1.37879 * 120.00098 * 180.02562 * 17 16 15 20 20 N 1.31518 * 119.99698 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00350 * 180.02562 * 19 17 16 22 22 H 1.48509 * 109.47336 * 59.99500 * 21 19 17 23 23 H 1.48500 * 109.47391 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47090 * 299.99879 * 21 19 17 25 25 C 1.47076 * 118.23766 * 51.19383 * 10 9 8 26 26 H 1.08999 * 109.63452 * 68.51565 * 25 10 9 27 27 C 1.53003 * 109.63318 * 188.90920 * 25 10 9 28 28 C 1.46897 * 111.00470 * 58.25190 * 7 6 5 29 29 H 1.08994 * 109.47474 * 300.00161 * 1 2 3 30 30 H 1.08998 * 109.46967 * 60.00794 * 1 2 3 31 31 H 1.09006 * 109.47046 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47060 * 59.99909 * 5 3 2 33 33 H 1.08999 * 109.46712 * 299.99942 * 5 3 2 34 34 H 1.08999 * 109.47239 * 59.99247 * 6 5 3 35 35 H 1.09008 * 109.46920 * 299.99963 * 6 5 3 36 36 H 1.09001 * 109.48915 * 67.29559 * 8 7 6 37 37 H 1.09004 * 109.48971 * 307.21100 * 8 7 6 38 38 H 1.09004 * 109.62632 * 186.45936 * 9 8 7 39 39 H 1.08998 * 109.63443 * 65.88106 * 9 8 7 40 40 H 1.09003 * 109.47740 * 299.99925 * 13 11 10 41 41 H 1.09001 * 109.47308 * 59.99974 * 13 11 10 42 42 H 1.08996 * 109.47065 * 300.00379 * 14 13 11 43 43 H 1.09001 * 109.46801 * 59.99875 * 14 13 11 44 44 H 1.08996 * 109.47287 * 300.00363 * 15 14 13 45 45 H 1.09001 * 109.47017 * 60.00126 * 15 14 13 46 46 H 1.08996 * 109.47375 * 300.00485 * 16 15 14 47 47 H 1.09001 * 109.46906 * 60.00734 * 16 15 14 48 48 H 0.96994 * 119.99867 * 180.02562 * 20 19 17 49 49 H 1.08999 * 109.46983 * 51.79570 * 27 25 10 50 50 H 1.08994 * 109.47037 * 171.79944 * 27 25 10 51 51 H 1.08997 * 109.46760 * 291.79919 * 27 25 10 52 52 H 1.09004 * 109.49452 * 52.78421 * 28 7 6 53 53 H 1.08998 * 109.49321 * 292.71170 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7421 0.0011 7 7 5.4670 2.8191 0.0011 8 6 6.0219 2.2901 1.2543 9 6 7.5312 2.5528 1.2916 10 7 8.1312 2.0048 0.0656 11 6 9.1943 1.1786 0.1253 12 8 9.7384 0.8158 -0.8960 13 6 9.7068 0.7055 1.4611 14 6 10.9104 -0.2149 1.2488 15 6 11.4312 -0.6948 2.6050 16 6 12.6345 -1.6156 2.3925 17 6 13.1470 -2.0887 3.7284 18 1 12.6627 -1.7653 4.6379 19 6 14.2342 -2.9345 3.7895 20 7 14.8236 -3.3287 2.6819 21 14 14.8691 -3.5215 5.4453 22 1 13.7954 -4.2657 6.1516 23 1 16.0370 -4.4152 5.2391 24 1 15.2791 -2.3507 6.2615 25 6 7.5402 2.3823 -1.2272 26 1 7.7248 3.4391 -1.4197 27 6 8.1630 1.5402 -2.3426 28 6 6.0305 2.1265 -1.1654 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.9564 0.7806 -0.8891 33 1 3.9556 0.7810 0.8908 34 1 3.6099 3.2361 0.8910 35 1 3.6106 3.2364 -0.8890 36 1 5.8379 1.2172 1.3092 37 1 5.5455 2.7852 2.1005 38 1 7.9666 2.0632 2.1628 39 1 7.7150 3.6260 1.3412 40 1 10.0075 1.5650 2.0602 41 1 8.9190 0.1590 1.9797 42 1 10.6094 -1.0745 0.6500 43 1 11.6983 0.3312 0.7300 44 1 11.7324 0.1650 3.2034 45 1 10.6435 -1.2408 3.1241 46 1 12.3329 -2.4754 1.7942 47 1 13.4224 -1.0700 1.8733 48 1 15.5882 -3.9240 2.7248 49 1 8.0992 0.4844 -2.0795 50 1 7.6248 1.7158 -3.2740 51 1 9.2087 1.8207 -2.4687 52 1 5.5604 2.5026 -2.0740 53 1 5.8464 1.0558 -1.0767 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588667822.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:58:52 Heat of formation + Delta-G solvation = -143.231344 kcal Electronic energy + Delta-G solvation = -29877.544197 eV Core-core repulsion = 25748.370962 eV Total energy + Delta-G solvation = -4129.173236 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.77024 -41.39987 -39.40636 -37.65606 -36.73041 -36.07754 -34.79789 -33.76823 -32.27969 -31.25789 -29.38623 -28.46388 -27.40662 -27.02375 -24.60077 -24.49341 -23.00871 -22.41503 -21.65857 -21.18897 -19.64264 -18.80904 -18.40527 -17.81613 -17.67494 -17.66222 -17.23656 -16.75455 -16.49388 -16.37797 -15.86463 -15.73666 -15.39251 -15.12615 -14.77891 -14.58359 -14.48696 -14.20599 -13.92229 -13.69905 -13.61407 -13.52335 -13.35470 -13.21180 -13.08516 -12.88764 -12.80680 -12.76143 -12.39017 -12.35285 -12.27158 -12.13530 -12.07261 -11.94695 -11.87396 -11.73280 -11.62397 -11.35541 -11.30366 -11.06290 -10.53157 -10.09430 -9.74547 -9.28653 -8.17333 -6.29530 1.09434 1.41093 1.45052 1.52890 1.68035 1.72073 1.98018 2.42927 2.82592 3.15175 3.56703 3.68579 3.79958 3.84802 3.95671 3.98612 4.06446 4.15062 4.16069 4.25018 4.25799 4.29858 4.29887 4.38801 4.44923 4.62471 4.63943 4.68392 4.69376 4.73364 4.75012 4.80756 4.85447 4.87592 4.91335 5.00622 5.07053 5.18857 5.22250 5.33503 5.34049 5.37059 5.40438 5.58166 5.67183 5.79863 5.89467 5.92078 5.98611 6.26650 6.47237 6.64487 6.88803 7.27620 7.39940 8.94568 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013704 B = 0.001841 C = 0.001713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.702036 B =15207.363019 C =16346.415182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.371 6.371 3 C 0.467 3.533 4 O -0.535 6.535 5 C -0.150 4.150 6 C 0.077 3.923 7 N -0.532 5.532 8 C 0.033 3.967 9 C 0.105 3.895 10 N -0.614 5.614 11 C 0.511 3.489 12 O -0.571 6.571 13 C -0.129 4.129 14 C -0.093 4.093 15 C -0.095 4.095 16 C 0.019 3.981 17 C -0.542 4.542 18 H 0.066 0.934 19 C -0.007 4.007 20 N -0.937 5.937 21 Si 0.969 3.031 22 H -0.264 1.264 23 H -0.286 1.286 24 H -0.265 1.265 25 C 0.147 3.853 26 H 0.080 0.920 27 C -0.130 4.130 28 C 0.045 3.955 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.126 0.874 32 H 0.115 0.885 33 H 0.119 0.881 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.046 0.954 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.085 0.915 40 H 0.114 0.886 41 H 0.114 0.886 42 H 0.042 0.958 43 H 0.041 0.959 44 H 0.060 0.940 45 H 0.060 0.940 46 H -0.016 1.016 47 H -0.016 1.016 48 H 0.262 0.738 49 H 0.042 0.958 50 H 0.065 0.935 51 H 0.054 0.946 52 H 0.100 0.900 53 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.622 14.024 -4.718 34.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.287 6.287 3 C 0.311 3.689 4 O -0.425 6.425 5 C -0.190 4.190 6 C -0.052 4.052 7 N -0.255 5.255 8 C -0.096 4.096 9 C -0.017 4.017 10 N -0.348 5.348 11 C 0.301 3.699 12 O -0.451 6.451 13 C -0.168 4.168 14 C -0.131 4.131 15 C -0.133 4.133 16 C -0.018 4.018 17 C -0.580 4.580 18 H 0.085 0.915 19 C -0.204 4.204 20 N -0.578 5.578 21 Si 0.793 3.207 22 H -0.189 1.189 23 H -0.211 1.211 24 H -0.189 1.189 25 C 0.044 3.956 26 H 0.098 0.902 27 C -0.188 4.188 28 C -0.083 4.083 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.145 0.855 32 H 0.133 0.867 33 H 0.137 0.863 34 H 0.108 0.892 35 H 0.102 0.898 36 H 0.065 0.935 37 H 0.129 0.871 38 H 0.128 0.872 39 H 0.104 0.896 40 H 0.132 0.868 41 H 0.132 0.868 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.002 0.998 47 H 0.002 0.998 48 H 0.071 0.929 49 H 0.061 0.939 50 H 0.084 0.916 51 H 0.073 0.927 52 H 0.119 0.881 53 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -30.298 14.531 -5.346 34.025 hybrid contribution 0.331 -1.444 0.317 1.515 sum -29.967 13.086 -5.029 33.084 Atomic orbital electron populations 1.23523 0.74859 1.05554 1.02587 1.86527 1.25047 1.33439 1.83684 1.24034 0.92642 0.81014 0.71194 1.90674 1.68039 1.37089 1.46692 1.22256 0.86779 1.02813 1.07112 1.22023 0.86306 0.92024 1.04800 1.62224 1.05039 1.55619 1.02621 1.22679 0.94744 0.99165 0.92976 1.22113 0.92546 1.00516 0.86492 1.48365 1.30737 1.47333 1.08382 1.21115 0.79398 0.77609 0.91818 1.90743 1.58634 1.58581 1.37156 1.21719 0.99055 1.01496 0.94549 1.21221 0.96576 0.98193 0.97128 1.21442 0.97277 0.98683 0.95854 1.19054 0.93510 0.93809 0.95474 1.21732 1.13914 1.28389 0.93982 0.91542 1.26097 0.97082 0.96524 1.00730 1.70128 1.22738 1.35445 1.29453 0.85442 0.77785 0.78416 0.79034 1.18893 1.21139 1.18926 1.21339 0.92041 0.99325 0.82898 0.90229 1.21979 1.00678 0.99232 0.96924 1.22600 0.93595 0.97213 0.94920 0.91822 0.91885 0.85542 0.86717 0.86340 0.89219 0.89818 0.93540 0.87085 0.87242 0.89640 0.86777 0.86774 0.93953 0.93999 0.92119 0.92106 0.99756 0.99777 0.92897 0.93913 0.91603 0.92743 0.88139 0.93877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 113.37 1.20 1.45 16 2 O -0.37 -5.19 10.57 -51.42 -0.54 -5.73 16 3 C 0.47 6.74 7.96 71.24 0.57 7.31 16 4 O -0.54 -10.52 15.73 21.97 0.35 -10.17 16 5 C -0.15 -1.40 5.12 29.85 0.15 -1.25 16 6 C 0.08 0.76 4.64 86.30 0.40 1.16 16 7 N -0.53 -5.75 4.83 -895.24 -4.32 -10.07 16 8 C 0.03 0.30 5.16 86.38 0.45 0.74 16 9 C 0.11 1.22 6.51 86.35 0.56 1.79 16 10 N -0.61 -11.64 3.01 -794.11 -2.39 -14.03 16 11 C 0.51 13.46 7.48 87.66 0.66 14.11 16 12 O -0.57 -19.99 11.69 -3.01 -0.04 -20.03 16 13 C -0.13 -3.10 4.06 29.85 0.12 -2.98 16 14 C -0.09 -3.31 4.50 30.59 0.14 -3.17 16 15 C -0.10 -3.84 5.15 30.59 0.16 -3.68 16 16 C 0.02 1.02 4.97 29.85 0.15 1.17 16 17 C -0.54 -31.36 9.11 25.60 0.23 -31.13 16 18 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 19 C -0.01 -0.42 5.46 84.65 0.46 0.04 16 20 N -0.94 -58.98 13.29 21.45 0.28 -58.69 16 21 Si 0.97 44.65 29.54 68.60 2.03 46.68 16 22 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 23 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 24 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 25 C 0.15 2.61 3.64 44.96 0.16 2.77 16 26 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 27 C -0.13 -2.90 7.64 71.98 0.55 -2.35 16 28 C 0.05 0.57 4.24 86.38 0.37 0.93 16 29 H 0.06 0.58 8.13 -2.39 -0.02 0.56 16 30 H 0.06 0.58 8.13 -2.39 -0.02 0.56 16 31 H 0.13 0.48 8.14 -2.38 -0.02 0.46 16 32 H 0.11 0.96 6.54 -2.39 -0.02 0.94 16 33 H 0.12 0.88 6.72 -2.39 -0.02 0.86 16 34 H 0.09 0.91 8.00 -2.39 -0.02 0.89 16 35 H 0.08 0.94 8.10 -2.38 -0.02 0.92 16 36 H 0.05 0.43 6.84 -2.39 -0.02 0.42 16 37 H 0.11 0.62 8.04 -2.39 -0.02 0.60 16 38 H 0.11 0.98 6.01 -2.38 -0.01 0.96 16 39 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.11 2.21 7.78 -2.39 -0.02 2.19 16 41 H 0.11 2.18 7.89 -2.39 -0.02 2.16 16 42 H 0.04 1.65 8.10 -2.39 -0.02 1.64 16 43 H 0.04 1.65 8.10 -2.39 -0.02 1.63 16 44 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 45 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 46 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 47 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 48 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 49 H 0.04 1.13 6.96 -2.39 -0.02 1.12 16 50 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 51 H 0.05 1.53 6.61 -2.39 -0.02 1.52 16 52 H 0.10 1.02 8.11 -2.38 -0.02 1.00 16 53 H 0.04 0.57 6.70 -2.39 -0.02 0.56 16 Total: -1.00 -78.46 414.12 2.56 -75.90 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: 0.87 Total: 9.23 kcal Atomic # 6 Polarization: -19.41 SS G_CDS: 6.32 Total: -13.09 kcal Atomic # 7 Polarization: -76.36 SS G_CDS: -6.43 Total: -82.79 kcal Atomic # 8 Polarization: -35.70 SS G_CDS: -0.23 Total: -35.93 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -78.46 2.56 -75.90 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588667822.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.329 kcal (2) G-P(sol) polarization free energy of solvation -78.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds